Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:08:33 (3968954): wrapper (7.7.26015): starting
20:08:33 (3968954): wrapper: running run_atlas (--nthreads 8)
[2026-03-01 20:08:33] Arguments: --nthreads 8
[2026-03-01 20:08:33] Threads: 8
[2026-03-01 20:08:33] Checking for CVMFS
[2026-03-01 20:08:34] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-01 20:08:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-01 20:08:34] Running cvmfs_config stat atlas.cern.ch
[2026-03-01 20:08:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-01 20:08:35] 2.13.3.0 1933508 164812 338752 156789 1 264 27917300 32503808 59457 16776704 0 1016048644 99.560 1173013972 35960 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-01 20:08:35] CVMFS is ok
[2026-03-01 20:08:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-01 20:08:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-01 20:08:35] Further information can be found at the LHC@home message board.
[2026-03-01 20:08:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-01 20:08:35] Checking for apptainer binary...
[2026-03-01 20:08:35] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-01 20:08:35] Running /usr/bin/apptainer --version
[2026-03-01 20:08:35] apptainer version 1.4.5-2.el9
[2026-03-01 20:08:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-01 20:08:35] c7-3-16.aglt2.org
[2026-03-01 20:08:35] apptainer works
[2026-03-01 20:08:36] Set ATHENA_PROC_NUMBER=8
[2026-03-01 20:08:36] Set ATHENA_CORE_NUMBER=8
[2026-03-01 20:08:36] Starting ATLAS job with PandaID=7035457973
[2026-03-01 20:08:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
22:20:08 (3968954): BOINC client no longer exists - exiting
22:20:08 (3968954): timer handler: client dead, exiting
22:27:58 (388564): wrapper (7.7.26015): starting
22:27:58 (388564): wrapper: running run_atlas (--nthreads 8)
[2026-03-01 22:27:58] Arguments: --nthreads 8
[2026-03-01 22:27:58] Threads: 8
[2026-03-01 22:27:58] This job has been restarted, cleaning up previous attempt
[2026-03-01 22:27:58] Checking for CVMFS
[2026-03-01 22:27:58] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-01 22:27:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-01 22:27:59] Running cvmfs_config stat atlas.cern.ch
[2026-03-01 22:27:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-01 22:27:59] 2.13.3.0 1933508 164952 326784 156793 2 59 29832876 32503809 54512 16776704 0 1016613548 99.560 1173550565 35958 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-01 22:27:59] CVMFS is ok
[2026-03-01 22:27:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-01 22:27:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-01 22:27:59] Further information can be found at the LHC@home message board.
[2026-03-01 22:27:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-01 22:27:59] Checking for apptainer binary...
[2026-03-01 22:27:59] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-01 22:27:59] Running /usr/bin/apptainer --version
[2026-03-01 22:27:59] apptainer version 1.4.5-2.el9
[2026-03-01 22:27:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-01 22:28:00] c7-3-16.aglt2.org
[2026-03-01 22:28:00] apptainer works
[2026-03-01 22:28:00] Set ATHENA_PROC_NUMBER=8
[2026-03-01 22:28:00] Set ATHENA_CORE_NUMBER=8
[2026-03-01 22:28:00] Starting ATLAS job with PandaID=7035457973
[2026-03-01 22:28:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-02 19:26:32]  *** The last 200 lines of the pilot log: ***
[2026-03-02 19:26:32] 2026-03-03 00:24:58,501 | INFO     | total number of processed events: 400 (read)
[2026-03-02 19:26:32] 2026-03-03 00:24:58,522 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-7035457973/memory_monitor_summary.json (trf name=prmon)
[2026-03-02 19:26:32] 2026-03-03 00:24:58,523 | INFO     | extracted standard info from prmon json
[2026-03-02 19:26:32] 2026-03-03 00:24:58,523 | INFO     | extracted standard memory fields from prmon json
[2026-03-02 19:26:32] 2026-03-03 00:24:58,523 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-02 19:26:32] 2026-03-03 00:24:58,524 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-02 19:26:32] 2026-03-03 00:24:58,524 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-02 19:26:32] 2026-03-03 00:24:58,538 | INFO     | fitting pss+swap vs Time
[2026-03-02 19:26:32] 2026-03-03 00:24:58,540 | INFO     | sum of square deviations: 585507254391.6862
[2026-03-02 19:26:32] 2026-03-03 00:24:58,597 | INFO     | sum of deviations: 439511490875.9553
[2026-03-02 19:26:32] 2026-03-03 00:24:58,597 | INFO     | mean x: 1772459809.55178
[2026-03-02 19:26:32] 2026-03-03 00:24:58,597 | INFO     | mean y: 2500100.1334951455
[2026-03-02 19:26:32] 2026-03-03 00:24:58,597 | INFO     | intersect: -1327998279.810875
[2026-03-02 19:26:32] 2026-03-03 00:24:58,598 | INFO     | chi2: 2.3798618864991194
[2026-03-02 19:26:32] 2026-03-03 00:24:58,600 | INFO     | sum of square deviations: 578430285406.6726
[2026-03-02 19:26:32] 2026-03-03 00:24:58,819 | INFO     | sum of deviations: 515656235245.59235
[2026-03-02 19:26:32] 2026-03-03 00:24:58,820 | INFO     | mean x: 1772459657.0519903
[2026-03-02 19:26:32] 2026-03-03 00:24:58,820 | INFO     | mean y: 2501735.350121852
[2026-03-02 19:26:32] 2026-03-03 00:24:58,820 | INFO     | intersect: -1577602033.3132672
[2026-03-02 19:26:32] 2026-03-03 00:24:58,821 | INFO     | chi2: 1.6658092546924983
[2026-03-02 19:26:32] 2026-03-03 00:24:58,821 | INFO     | current chi2=1.6658092546924983 (change=30.003952576299447 %)
[2026-03-02 19:26:32] 2026-03-03 00:24:58,822 | INFO     | sum of square deviations: 571410498461.2628
[2026-03-02 19:26:32] 2026-03-03 00:24:58,860 | INFO     | sum of deviations: 511628691326.77344
[2026-03-02 19:26:32] 2026-03-03 00:24:58,860 | INFO     | mean x: 1772459504.5513866
[2026-03-02 19:26:32] 2026-03-03 00:24:58,860 | INFO     | mean y: 2501647.86867863
[2026-03-02 19:26:32] 2026-03-03 00:24:58,860 | INFO     | intersect: -1584520535.2822037
[2026-03-02 19:26:32] 2026-03-03 00:24:58,861 | INFO     | chi2: 1.6658167522456455
[2026-03-02 19:26:32] 2026-03-03 00:24:58,861 | INFO     | current chi2=1.6658167522456455 (change=-0.00045008473365707716 %)
[2026-03-02 19:26:32] 2026-03-03 00:24:58,861 | INFO     | right removable region: 1225
[2026-03-02 19:26:32] 2026-03-03 00:24:58,862 | INFO     | sum of square deviations: 578430246366.6725
[2026-03-02 19:26:32] 2026-03-03 00:24:58,919 | INFO     | sum of deviations: 222744388789.21442
[2026-03-02 19:26:32] 2026-03-03 00:24:58,919 | INFO     | mean x: 1772459962.0519903
[2026-03-02 19:26:32] 2026-03-03 00:24:58,919 | INFO     | mean y: 2504763.871649066
[2026-03-02 19:26:32] 2026-03-03 00:24:58,919 | INFO     | intersect: -680041685.5585797
[2026-03-02 19:26:32] 2026-03-03 00:24:58,920 | INFO     | chi2: 0.7807585282186523
[2026-03-02 19:26:32] 2026-03-03 00:24:58,921 | INFO     | current chi2=0.7807585282186523 (change=67.19311601030839 %)
[2026-03-02 19:26:32] 2026-03-03 00:24:58,921 | INFO     | sum of square deviations: 571410495229.1573
[2026-03-02 19:26:32] 2026-03-03 00:24:59,108 | INFO     | time since job start (75389s) is within the limit (349056.0s)
[2026-03-02 19:26:32] 2026-03-03 00:24:59,189 | INFO     | sum of deviations: 177507803626.78668
[2026-03-02 19:26:32] 2026-03-03 00:24:59,189 | INFO     | mean x: 1772460114.5522022
[2026-03-02 19:26:32] 2026-03-03 00:24:59,189 | INFO     | mean y: 2505745.893964111
[2026-03-02 19:26:32] 2026-03-03 00:24:59,189 | INFO     | intersect: -548106300.2219676
[2026-03-02 19:26:32] 2026-03-03 00:24:59,190 | INFO     | chi2: 0.7303848011124157
[2026-03-02 19:26:32] 2026-03-03 00:24:59,190 | INFO     | current chi2=0.7303848011124157 (change=6.4518958532758335 %)
[2026-03-02 19:26:32] 2026-03-03 00:24:59,190 | INFO     | left removable region: 20
[2026-03-02 19:26:32] 2026-03-03 00:24:59,191 | INFO     | sum of square deviations: 542547623200.8097
[2026-03-02 19:26:32] 2026-03-03 00:24:59,219 | INFO     | sum of deviations: 248828926544.5625
[2026-03-02 19:26:32] 2026-03-03 00:24:59,219 | INFO     | mean x: 1772460084.0514524
[2026-03-02 19:26:32] 2026-03-03 00:24:59,219 | INFO     | mean y: 2507386.507053942
[2026-03-02 19:26:32] 2026-03-03 00:24:59,219 | INFO     | intersect: -810396994.9657755
[2026-03-02 19:26:32] 2026-03-03 00:24:59,220 | INFO     | chi2: 0.012681754861635395
[2026-03-02 19:26:32] 2026-03-03 00:24:59,220 | INFO     | current memory leak: 0.46 B/s (using 1205 data points, chi2=0.01)
[2026-03-02 19:26:32] 2026-03-03 00:24:59,221 | INFO     | could have reported an average CPU frequency of 3315 MHz (45 samples)
[2026-03-02 19:26:32] 2026-03-03 00:24:59,221 | INFO     | ..............................
[2026-03-02 19:26:32] 2026-03-03 00:24:59,222 | INFO     | . Timing measurements:
[2026-03-02 19:26:32] 2026-03-03 00:24:59,222 | INFO     | . get job = 0 s
[2026-03-02 19:26:32] 2026-03-03 00:24:59,222 | INFO     | . initial setup = 1 s
[2026-03-02 19:26:32] 2026-03-03 00:24:59,222 | INFO     | . payload setup = 16 s
[2026-03-02 19:26:32] 2026-03-03 00:24:59,222 | INFO     | . stage-in = 0 s
[2026-03-02 19:26:32] 2026-03-03 00:24:59,222 | INFO     | . payload execution = 75356 s
[2026-03-02 19:26:32] 2026-03-03 00:24:59,222 | INFO     | . stage-out = 4 s
[2026-03-02 19:26:32] 2026-03-03 00:24:59,222 | INFO     | . log creation = 1 s
[2026-03-02 19:26:32] 2026-03-03 00:24:59,222 | INFO     | ..............................
[2026-03-02 19:26:32] 2026-03-03 00:24:59,426 | INFO     | 
[2026-03-02 19:26:32] 2026-03-03 00:24:59,426 | INFO     | job summary report
[2026-03-02 19:26:32] 2026-03-03 00:24:59,426 | INFO     | --------------------------------------------------
[2026-03-02 19:26:32] 2026-03-03 00:24:59,427 | INFO     | PanDA job id: 7035457973
[2026-03-02 19:26:32] 2026-03-03 00:24:59,427 | INFO     | task id: 48844242
[2026-03-02 19:26:32] 2026-03-03 00:24:59,427 | INFO     | errors: (none)
[2026-03-02 19:26:32] 2026-03-03 00:24:59,427 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-02 19:26:32] 2026-03-03 00:24:59,427 | INFO     | pilot state: finished 
[2026-03-02 19:26:32] 2026-03-03 00:24:59,427 | INFO     | transexitcode: 0
[2026-03-02 19:26:32] 2026-03-03 00:24:59,427 | INFO     | exeerrorcode: 0
[2026-03-02 19:26:32] 2026-03-03 00:24:59,427 | INFO     | exeerrordiag: 
[2026-03-02 19:26:32] 2026-03-03 00:24:59,427 | INFO     | exitcode: 0
[2026-03-02 19:26:32] 2026-03-03 00:24:59,427 | INFO     | exitmsg: OK
[2026-03-02 19:26:32] 2026-03-03 00:24:59,427 | INFO     | cpuconsumptiontime: 70868 s
[2026-03-02 19:26:32] 2026-03-03 00:24:59,427 | INFO     | nevents: 400
[2026-03-02 19:26:32] 2026-03-03 00:24:59,427 | INFO     | neventsw: 0
[2026-03-02 19:26:32] 2026-03-03 00:24:59,427 | INFO     | pid: 419844
[2026-03-02 19:26:32] 2026-03-03 00:24:59,427 | INFO     | pgrp: 419844
[2026-03-02 19:26:32] 2026-03-03 00:24:59,427 | INFO     | corecount: 8
[2026-03-02 19:26:32] 2026-03-03 00:24:59,427 | INFO     | event service: False
[2026-03-02 19:26:32] 2026-03-03 00:24:59,427 | INFO     | sizes: {0: 2282380, 1: 2282380, 75377: 2337742, 75378: 2337769, 75383: 2346823, 75386: 2346879, 75387: 2347201}
[2026-03-02 19:26:32] 2026-03-03 00:24:59,428 | INFO     | --------------------------------------------------
[2026-03-02 19:26:32] 2026-03-03 00:24:59,428 | INFO     | 
[2026-03-02 19:26:32] 2026-03-03 00:24:59,428 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-03-02 19:26:32] 2026-03-03 00:24:59,521 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-02 19:26:32] 2026-03-03 00:24:59,521 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-02 19:26:32] 2026-03-03 00:24:59,521 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-02 19:26:32] 2026-03-03 00:24:59,521 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-02 19:26:32] 2026-03-03 00:24:59,521 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-02 19:26:32] 2026-03-03 00:24:59,521 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-02 19:26:32] 2026-03-03 00:24:59,521 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-02 19:26:32] 2026-03-03 00:24:59,521 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-02 19:26:32] 2026-03-03 00:24:59,521 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-02 19:26:32] 2026-03-03 00:24:59,521 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-02 19:26:32] 2026-03-03 00:24:59,522 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-02 19:26:32] 2026-03-03 00:24:59,522 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-02 19:26:32] 2026-03-03 00:24:59,522 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-02 19:26:32] 2026-03-03 00:24:59,522 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-02 19:26:32] 2026-03-03 00:24:59,522 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-02 19:26:32] 2026-03-03 00:24:59,522 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-02 19:26:32] 2026-03-03 00:24:59,522 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-02 19:26:32] 2026-03-03 00:24:59,522 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-02 19:26:32] 2026-03-03 00:24:59,523 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-02 19:26:32] 2026-03-03 00:24:59,523 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-02 19:26:32] 2026-03-03 00:24:59,523 | INFO     | job 7035457973 has completed (purged errors)
[2026-03-02 19:26:32] 2026-03-03 00:24:59,523 | INFO     | overall cleanup function is called
[2026-03-02 19:26:32] 2026-03-03 00:25:00,548 | INFO     | --- collectZombieJob: --- 10, [419844]
[2026-03-02 19:26:32] 2026-03-03 00:25:00,548 | INFO     | zombie collector waiting for pid 419844
[2026-03-02 19:26:32] 2026-03-03 00:25:00,549 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-02 19:26:32] 2026-03-03 00:25:00,549 | INFO     | collected zombie processes
[2026-03-02 19:26:32] 2026-03-03 00:25:00,549 | INFO     | will attempt to kill all subprocesses of pid=419844
[2026-03-02 19:26:32] 2026-03-03 00:25:02,463 | INFO     | process IDs to be killed: [419844] (in reverse order)
[2026-03-02 19:26:32] 2026-03-03 00:25:03,313 | WARNING  | found no corresponding commands to process id(s)
[2026-03-02 19:26:32] 2026-03-03 00:25:03,313 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-02 19:26:32] 2026-03-03 00:25:03,450 | INFO     | did not find any defunct processes belonging to 419844
[2026-03-02 19:26:32] 2026-03-03 00:25:03,521 | INFO     | did not find any defunct processes belonging to 419844
[2026-03-02 19:26:32] 2026-03-03 00:25:03,522 | INFO     | ready for new job
[2026-03-02 19:26:32] 2026-03-03 00:25:03,522 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-02 19:26:32] 2026-03-03 00:25:03,528 | INFO     | **************************************
[2026-03-02 19:26:32] 2026-03-03 00:25:03,528 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-02 19:26:32] 2026-03-03 00:25:03,528 | INFO     | **************************************
[2026-03-02 19:26:32] 2026-03-03 00:25:03,528 | INFO     | 
[2026-03-02 19:26:32] 2026-03-03 00:25:03,538 | INFO     | architecture information:
[2026-03-02 19:26:32] 2026-03-03 00:25:03,542 | INFO     | executing command: cat /etc/os-release
[2026-03-02 19:26:32] 2026-03-03 00:25:03,601 | INFO     | cat /etc/os-release:
[2026-03-02 19:26:32] NAME="CentOS Linux"
[2026-03-02 19:26:32] VERSION="7 (Core)"
[2026-03-02 19:26:32] ID="centos"
[2026-03-02 19:26:32] ID_LIKE="rhel fedora"
[2026-03-02 19:26:32] VERSION_ID="7"
[2026-03-02 19:26:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-02 19:26:32] ANSI_COLOR="0;31"
[2026-03-02 19:26:32] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-02 19:26:32] HOME_URL="https://www.centos.org/"
[2026-03-02 19:26:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-02 19:26:32] 
[2026-03-02 19:26:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-02 19:26:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-02 19:26:32] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-02 19:26:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-02 19:26:32] 
[2026-03-02 19:26:32] 2026-03-03 00:25:03,602 | INFO     | **************************************
[2026-03-02 19:26:32] 2026-03-03 00:25:04,105 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-03-02 19:26:32] 2026-03-03 00:25:04,196 | INFO     | sufficient remaining disk space (94208262144 B)
[2026-03-02 19:26:32] 2026-03-03 00:25:04,197 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-02 19:26:32] 2026-03-03 00:25:04,197 | INFO     | current server update state: UPDATING_FINAL
[2026-03-02 19:26:32] 2026-03-03 00:25:04,197 | INFO     | update_server=False
[2026-03-02 19:26:32] 2026-03-03 00:25:04,197 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-02 19:26:32] 2026-03-03 00:25:04,198 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-02 19:26:32] 2026-03-03 00:25:04,417 | INFO     | all data control threads have been joined
[2026-03-02 19:26:32] 2026-03-03 00:25:04,450 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-02 19:26:32] 2026-03-03 00:25:04,540 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-02 19:26:32] 2026-03-03 00:25:04,662 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-02 19:26:32] 2026-03-03 00:25:04,662 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-02 19:26:32] 2026-03-03 00:25:04,663 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-02 19:26:32] 2026-03-03 00:25:04,663 | INFO     | will abort loop
[2026-03-02 19:26:32] 2026-03-03 00:25:04,776 | INFO     | all payload control threads have been joined
[2026-03-02 19:26:32] 2026-03-03 00:25:05,196 | INFO     | all job control threads have been joined
[2026-03-02 19:26:32] 2026-03-03 00:25:05,202 | INFO     | [job] retrieve thread has finished
[2026-03-02 19:26:32] 2026-03-03 00:25:05,280 | INFO     | [payload] validate_pre thread has finished
[2026-03-02 19:26:32] 2026-03-03 00:25:05,423 | INFO     | [data] control thread has finished
[2026-03-02 19:26:32] 2026-03-03 00:25:05,431 | INFO     | [payload] execute_payloads thread has finished
[2026-03-02 19:26:32] 2026-03-03 00:25:05,456 | INFO     | [job] queue monitor thread has finished
[2026-03-02 19:26:32] 2026-03-03 00:25:05,473 | INFO     | [job] create_data_payload thread has finished
[2026-03-02 19:26:32] 2026-03-03 00:25:05,668 | INFO     | [job] validate thread has finished
[2026-03-02 19:26:32] 2026-03-03 00:25:05,669 | INFO     | [data] copytool_in thread has finished
[2026-03-02 19:26:32] 2026-03-03 00:25:05,669 | INFO     | [job] job monitor thread has finished
[2026-03-02 19:26:32] 2026-03-03 00:25:05,755 | INFO     | [payload] validate_post thread has finished
[2026-03-02 19:26:32] 2026-03-03 00:25:05,756 | INFO     | [payload] failed_post thread has finished
[2026-03-02 19:26:32] 2026-03-03 00:25:05,782 | INFO     | [payload] control thread has finished
[2026-03-02 19:26:32] 2026-03-03 00:25:06,204 | INFO     | [data] copytool_out thread has finished
[2026-03-02 19:26:32] 2026-03-03 00:25:06,205 | INFO     | [job] control thread has finished
[2026-03-02 19:26:32] 2026-03-03 00:25:06,537 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-02 19:26:32] 2026-03-03 00:25:08,549 | INFO     | [data] queue_monitor thread has finished
[2026-03-02 19:26:32] 2026-03-03 00:25:34,733 | INFO     | PID=408741 has CPU usage=9.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-02 19:26:32] 2026-03-03 00:25:34,758 | INFO     | .. there are 85 such processes running
[2026-03-02 19:26:32] 2026-03-03 00:25:34,760 | INFO     | found 0 job(s) in 20 queues
[2026-03-02 19:26:32] 2026-03-03 00:25:34,760 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-02 19:26:32] 2026-03-03 00:25:34,760 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-02 19:26:32] 2026-03-03 00:26:04,059 | INFO     | [monitor] cgroup control has ended
[2026-03-02 19:26:32] 2026-03-03 00:26:05,226 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140018400515904)>', '<ExcThread(monitor, started 140018030974720)>']
[2026-03-02 19:26:32] 2026-03-03 00:26:06,041 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-02 19:26:32] 2026-03-03 00:26:06,041 | INFO     | [monitor] control thread has ended
[2026-03-02 19:26:32] 2026-03-03 00:26:10,252 | INFO     | all workflow threads have been joined
[2026-03-02 19:26:32] 2026-03-03 00:26:10,252 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-02 19:26:32] 2026-03-03 00:26:10,253 | INFO     | traces error code: 0
[2026-03-02 19:26:32] 2026-03-03 00:26:10,253 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-02 19:26:32] 2026-03-03 00:26:10,513 [wrapper] ==== pilot stdout END ====
[2026-03-02 19:26:32] 2026-03-03 00:26:10,559 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-02 19:26:32] 2026-03-03 00:26:10,582 [wrapper] pilotpid: 408741
[2026-03-02 19:26:32] 2026-03-03 00:26:10,602 [wrapper] Pilot exit status: 0
[2026-03-02 19:26:32] 2026-03-03 00:26:10,745 [wrapper] pandaids: 7035457973 7035457973
[2026-03-02 19:26:32] 2026-03-03 00:26:11,168 [wrapper] cleanup supervisor_pilot  392427 408742
[2026-03-02 19:26:32] 2026-03-03 00:26:11,190 [wrapper] Test setup, not cleaning
[2026-03-02 19:26:32] 2026-03-03 00:26:11,200 [wrapper] apfmon messages muted
[2026-03-02 19:26:32] 2026-03-03 00:26:11,222 [wrapper] ==== wrapper stdout END ====
[2026-03-02 19:26:32] 2026-03-03 00:26:11,246 [wrapper] ==== wrapper stderr END ====
[2026-03-02 19:26:32]  *** Error codes and diagnostics ***
[2026-03-02 19:26:32]     "exeErrorCode": 0,
[2026-03-02 19:26:32]     "exeErrorDiag": "",
[2026-03-02 19:26:32]     "pilotErrorCode": 0,
[2026-03-02 19:26:32]     "pilotErrorDiag": "",
[2026-03-02 19:26:32]  *** Listing of results directory ***
[2026-03-02 19:26:32] total 637356
[2026-03-02 19:26:32] drwx------. 5 boincer umatlas      4096 Feb  2 10:00 pilot3
[2026-03-02 19:26:32] -rw-r--r--. 1 boincer umatlas    584627 Mar  1 13:35 pilot3.tar.gz
[2026-03-02 19:26:32] -rwx------. 1 boincer umatlas     36322 Mar  1 13:36 runpilot2-wrapper.sh
[2026-03-02 19:26:32] -rw-r--r--. 1 boincer umatlas      5111 Mar  1 13:36 queuedata.json
[2026-03-02 19:26:32] -rw-r--r--. 1 boincer umatlas       100 Mar  1 20:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-02 19:26:32] -rwxr-xr-x. 1 boincer umatlas      7986 Mar  1 20:08 run_atlas
[2026-03-02 19:26:32] -rw-r--r--. 1 boincer umatlas       105 Mar  1 20:08 job.xml
[2026-03-02 19:26:32] -rw-r--r--. 3 boincer umatlas 218219978 Mar  1 20:08 EVNT.48452844._000002.pool.root.1
[2026-03-02 19:26:32] -rw-r--r--. 3 boincer umatlas 218219978 Mar  1 20:08 ATLAS.root_0
[2026-03-02 19:26:32] -rw-r--r--. 2 boincer umatlas     15845 Mar  1 20:08 start_atlas.sh
[2026-03-02 19:26:32] drwxrwx--x. 2 boincer umatlas      4096 Mar  1 20:08 shared
[2026-03-02 19:26:32] -rw-r--r--. 2 boincer umatlas    597990 Mar  1 20:08 input.tar.gz
[2026-03-02 19:26:32] -rw-r--r--. 1 boincer umatlas         0 Mar  1 20:08 boinc_lockfile
[2026-03-02 19:26:32] -rw-r--r--. 1 boincer umatlas      2649 Mar  1 22:28 pandaJob.out
[2026-03-02 19:26:32] -rw-------. 1 boincer umatlas        57 Mar  1 22:28 setup.sh.local
[2026-03-02 19:26:32] -rw-------. 1 boincer umatlas    998242 Mar  1 22:28 agis_schedconf.cvmfs.json
[2026-03-02 19:26:32] -rw-------. 1 boincer umatlas       428 Mar  1 22:28 workernode_map.json
[2026-03-02 19:26:32] -rw-r--r--. 1 boincer umatlas      6946 Mar  2 19:21 init_data.xml
[2026-03-02 19:26:32] -rw-------. 1 boincer umatlas 195766363 Mar  2 19:23 HITS.48844242._000028.pool.root.1
[2026-03-02 19:26:32] -rw-r--r--. 1 boincer umatlas       530 Mar  2 19:24 boinc_task_state.xml
[2026-03-02 19:26:32] -rw-------. 1 boincer umatlas      1046 Mar  2 19:24 memory_monitor_summary.json
[2026-03-02 19:26:32] -rw-------. 1 boincer umatlas   1512931 Mar  2 19:24 agis_ddmendpoints.agis.ALL.json
[2026-03-02 19:26:32] -rw-------. 1 boincer umatlas   1044097 Mar  2 19:24 log.48844242._000028.job.log.tgz.1
[2026-03-02 19:26:32] -rw-------. 1 boincer umatlas      6338 Mar  2 19:24 heartbeat.json
[2026-03-02 19:26:32] -rw-------. 1 boincer umatlas        96 Mar  2 19:25 pilot_heartbeat.json
[2026-03-02 19:26:32] -rw-------. 1 boincer umatlas      5005 Mar  2 19:26 pilotlog.txt
[2026-03-02 19:26:32] -rw-------. 1 boincer umatlas   7208388 Mar  2 19:26 log.48844242._000028.job.log.1
[2026-03-02 19:26:32] -rw-------. 1 boincer umatlas       357 Mar  2 19:26 output.list
[2026-03-02 19:26:32] -rw-r--r--. 1 boincer umatlas       620 Mar  2 19:26 runtime_log
[2026-03-02 19:26:32] -rw-------. 1 boincer umatlas   8273920 Mar  2 19:26 result.tar.gz
[2026-03-02 19:26:32] -rw-------. 1 boincer umatlas       787 Mar  2 19:26 wI3LDmPp0G9n9Rq4apOajLDm4fhM0noT9bVooX4SDmmP9KDmSt1Ern.diag
[2026-03-02 19:26:32] -rw-r--r--. 1 boincer umatlas      9422 Mar  2 19:26 runtime_log.err
[2026-03-02 19:26:32] -rw-r--r--. 1 boincer umatlas        28 Mar  2 19:26 wrapper_checkpoint.txt
[2026-03-02 19:26:32] -rw-r--r--. 1 boincer umatlas      8192 Mar  2 19:26 boinc_mmap_file
[2026-03-02 19:26:32] -rw-r--r--. 1 boincer umatlas     23438 Mar  2 19:26 stderr.txt
[2026-03-02 19:26:32] HITS file was successfully produced:
[2026-03-02 19:26:32] -rw-------. 1 boincer umatlas 195766363 Mar  2 19:23 shared/HITS.pool.root.1
[2026-03-02 19:26:32]  *** Contents of shared directory: ***
[2026-03-02 19:26:32] total 412976
[2026-03-02 19:26:32] -rw-r--r--. 3 boincer umatlas 218219978 Mar  1 20:08 ATLAS.root_0
[2026-03-02 19:26:32] -rw-r--r--. 2 boincer umatlas     15845 Mar  1 20:08 start_atlas.sh
[2026-03-02 19:26:32] -rw-r--r--. 2 boincer umatlas    597990 Mar  1 20:08 input.tar.gz
[2026-03-02 19:26:32] -rw-------. 1 boincer umatlas 195766363 Mar  2 19:23 HITS.pool.root.1
[2026-03-02 19:26:32] -rw-------. 1 boincer umatlas   8273920 Mar  2 19:26 result.tar.gz
19:26:33 (388564): run_atlas exited; CPU time 74624.209686
19:26:33 (388564): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN