Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
08:10:59 (5583): wrapper (7.7.26015): starting
08:10:59 (5583): wrapper: running run_atlas (--nthreads 8)
[2026-03-02 08:10:59] Arguments: --nthreads 8
[2026-03-02 08:10:59] Threads: 8
[2026-03-02 08:10:59] Checking for CVMFS
[2026-03-02 08:11:10] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-02 08:11:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-02 08:11:19] Running cvmfs_config stat atlas.cern.ch
[2026-03-02 08:11:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-02 08:11:20] 2.13.3.0 5794 0 25552 156782 3 1 3329318 4096000 0 130560 0 0 0.000 1336 160 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://131.225.189.146:3126 1
[2026-03-02 08:11:20] CVMFS is ok
[2026-03-02 08:11:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-02 08:11:20] Checking for apptainer binary...
[2026-03-02 08:11:20] apptainer is not installed, using version from CVMFS
[2026-03-02 08:11:20] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-02 08:11:20] gp
[2026-03-02 08:11:20] apptainer works
[2026-03-02 08:11:20] Set ATHENA_PROC_NUMBER=8
[2026-03-02 08:11:20] Set ATHENA_CORE_NUMBER=8
[2026-03-02 08:11:20] Starting ATLAS job with PandaID=7035196607
[2026-03-02 08:11:20] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-02 11:08:56]  *** The last 200 lines of the pilot log: ***
[2026-03-02 11:08:56] 2026-03-02 00:08:12,979 | INFO     | job 7035196607 has finished - writing final server update
[2026-03-02 11:08:56] 2026-03-02 00:08:12,980 | INFO     | total number of processed events: 400 (read)
[2026-03-02 11:08:56] 2026-03-02 00:08:12,983 | INFO     | using path: /var/lib/boinc-client/slots/6/PanDA_Pilot-7035196607/memory_monitor_summary.json (trf name=prmon)
[2026-03-02 11:08:56] 2026-03-02 00:08:12,984 | INFO     | extracted standard info from prmon json
[2026-03-02 11:08:56] 2026-03-02 00:08:12,985 | INFO     | extracted standard memory fields from prmon json
[2026-03-02 11:08:56] 2026-03-02 00:08:12,985 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-02 11:08:56] 2026-03-02 00:08:12,985 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-02 11:08:56] 2026-03-02 00:08:12,985 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-02 11:08:56] 2026-03-02 00:08:12,990 | INFO     | fitting pss+swap vs Time
[2026-03-02 11:08:56] 2026-03-02 00:08:12,991 | INFO     | sum of square deviations: 1605470102.0
[2026-03-02 11:08:56] 2026-03-02 00:08:12,993 | INFO     | sum of deviations: 32808480583.999992
[2026-03-02 11:08:56] 2026-03-02 00:08:12,993 | INFO     | mean x: 1772404828.0
[2026-03-02 11:08:56] 2026-03-02 00:08:12,993 | INFO     | mean y: 2519624.479768786
[2026-03-02 11:08:56] 2026-03-02 00:08:12,993 | INFO     | intersect: -36217344771.61588
[2026-03-02 11:08:56] 2026-03-02 00:08:12,994 | INFO     | chi2: 3.4266363498799906
[2026-03-02 11:08:56] 2026-03-02 00:08:12,995 | INFO     | sum of square deviations: 1470248962.0
[2026-03-02 11:08:56] 2026-03-02 00:08:12,996 | INFO     | sum of deviations: 42957889944.0
[2026-03-02 11:08:56] 2026-03-02 00:08:12,996 | INFO     | mean x: 1772404675.5
[2026-03-02 11:08:56] 2026-03-02 00:08:12,996 | INFO     | mean y: 2530780.523809524
[2026-03-02 11:08:56] 2026-03-02 00:08:12,997 | INFO     | intersect: -51783776813.79506
[2026-03-02 11:08:56] 2026-03-02 00:08:12,997 | INFO     | chi2: 2.7596113599173084
[2026-03-02 11:08:56] 2026-03-02 00:08:12,997 | INFO     | current chi2=2.7596113599173084 (change=19.4658820445316 %)
[2026-03-02 11:08:56] 2026-03-02 00:08:12,997 | INFO     | right removable region: 167
[2026-03-02 11:08:56] 2026-03-02 00:08:12,998 | INFO     | sum of square deviations: 1470248962.0
[2026-03-02 11:08:56] 2026-03-02 00:08:13,000 | INFO     | sum of deviations: -7988477405.999998
[2026-03-02 11:08:56] 2026-03-02 00:08:13,000 | INFO     | mean x: 1772404980.5
[2026-03-02 11:08:56] 2026-03-02 00:08:13,000 | INFO     | mean y: 2565472.214285714
[2026-03-02 11:08:56] 2026-03-02 00:08:13,000 | INFO     | intersect: 9632782875.49385
[2026-03-02 11:08:56] 2026-03-02 00:08:13,001 | INFO     | chi2: 1.222463572960263
[2026-03-02 11:08:56] 2026-03-02 00:08:13,001 | INFO     | current chi2=1.222463572960263 (change=64.3246773763117 %)
[2026-03-02 11:08:56] 2026-03-02 00:08:13,001 | INFO     | sum of square deviations: 1342841922.0
[2026-03-02 11:08:56] 2026-03-02 00:08:13,003 | INFO     | sum of deviations: -23084923691.999996
[2026-03-02 11:08:56] 2026-03-02 00:08:13,003 | INFO     | mean x: 1772405133.0
[2026-03-02 11:08:56] 2026-03-02 00:08:13,003 | INFO     | mean y: 2583281.588957055
[2026-03-02 11:08:56] 2026-03-02 00:08:13,003 | INFO     | intersect: 30472169147.418148
[2026-03-02 11:08:56] 2026-03-02 00:08:13,004 | INFO     | chi2: 0.718448390612211
[2026-03-02 11:08:56] 2026-03-02 00:08:13,004 | INFO     | current chi2=0.718448390612211 (change=41.2294642962286 %)
[2026-03-02 11:08:56] 2026-03-02 00:08:13,004 | INFO     | sum of square deviations: 1223016419.5
[2026-03-02 11:08:56] 2026-03-02 00:08:13,006 | INFO     | sum of deviations: -23258832739.999996
[2026-03-02 11:08:56] 2026-03-02 00:08:13,006 | INFO     | mean x: 1772405285.5
[2026-03-02 11:08:56] 2026-03-02 00:08:13,007 | INFO     | mean y: 2583497.5316455695
[2026-03-02 11:08:56] 2026-03-02 00:08:13,007 | INFO     | intersect: 33709471995.22646
[2026-03-02 11:08:56] 2026-03-02 00:08:13,007 | INFO     | chi2: 0.714748350208644
[2026-03-02 11:08:56] 2026-03-02 00:08:13,007 | INFO     | current chi2=0.714748350208644 (change=0.515004341566422 %)
[2026-03-02 11:08:56] 2026-03-02 00:08:13,008 | INFO     | left removable region: 30
[2026-03-02 11:08:56] 2026-03-02 00:08:13,008 | INFO     | sum of square deviations: 797291228.0
[2026-03-02 11:08:56] 2026-03-02 00:08:13,009 | INFO     | sum of deviations: -10052124852.0
[2026-03-02 11:08:56] 2026-03-02 00:08:13,009 | INFO     | mean x: 1772405560.0
[2026-03-02 11:08:56] 2026-03-02 00:08:13,009 | INFO     | mean y: 2594408.4963503648
[2026-03-02 11:08:56] 2026-03-02 00:08:13,010 | INFO     | intersect: 22348810385.550816
[2026-03-02 11:08:56] 2026-03-02 00:08:13,010 | INFO     | chi2: 0.017208292289308803
[2026-03-02 11:08:56] 2026-03-02 00:08:13,010 | INFO     | current memory leak: -12.61 B/s (using 137 data points, chi2=0.02)
[2026-03-02 11:08:56] 2026-03-02 00:08:13,011 | INFO     | could have reported an average CPU frequency of 1419 MHz (9 samples)
[2026-03-02 11:08:56] 2026-03-02 00:08:13,011 | INFO     | ..............................
[2026-03-02 11:08:56] 2026-03-02 00:08:13,011 | INFO     | . Timing measurements:
[2026-03-02 11:08:56] 2026-03-02 00:08:13,012 | INFO     | . get job = 0 s
[2026-03-02 11:08:56] 2026-03-02 00:08:13,012 | INFO     | . initial setup = 13 s
[2026-03-02 11:08:56] 2026-03-02 00:08:13,012 | INFO     | . payload setup = 11 s
[2026-03-02 11:08:56] 2026-03-02 00:08:13,012 | INFO     | . stage-in = 0 s
[2026-03-02 11:08:56] 2026-03-02 00:08:13,012 | INFO     | . payload execution = 10507 s
[2026-03-02 11:08:56] 2026-03-02 00:08:13,012 | INFO     | . stage-out = 0 s
[2026-03-02 11:08:56] 2026-03-02 00:08:13,013 | INFO     | . log creation = 0 s
[2026-03-02 11:08:56] 2026-03-02 00:08:13,013 | INFO     | ..............................
[2026-03-02 11:08:56] 2026-03-02 00:08:13,471 | INFO     | 
[2026-03-02 11:08:56] 2026-03-02 00:08:13,472 | INFO     | job summary report
[2026-03-02 11:08:56] 2026-03-02 00:08:13,472 | INFO     | --------------------------------------------------
[2026-03-02 11:08:56] 2026-03-02 00:08:13,472 | INFO     | PanDA job id: 7035196607
[2026-03-02 11:08:56] 2026-03-02 00:08:13,472 | INFO     | task id: 48838416
[2026-03-02 11:08:56] 2026-03-02 00:08:13,472 | INFO     | errors: (none)
[2026-03-02 11:08:56] 2026-03-02 00:08:13,472 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-02 11:08:56] 2026-03-02 00:08:13,472 | INFO     | pilot state: finished 
[2026-03-02 11:08:56] 2026-03-02 00:08:13,472 | INFO     | transexitcode: 0
[2026-03-02 11:08:56] 2026-03-02 00:08:13,472 | INFO     | exeerrorcode: 0
[2026-03-02 11:08:56] 2026-03-02 00:08:13,473 | INFO     | exeerrordiag: 
[2026-03-02 11:08:56] 2026-03-02 00:08:13,473 | INFO     | exitcode: 0
[2026-03-02 11:08:56] 2026-03-02 00:08:13,473 | INFO     | exitmsg: OK
[2026-03-02 11:08:56] 2026-03-02 00:08:13,473 | INFO     | cpuconsumptiontime: 74134 s
[2026-03-02 11:08:56] 2026-03-02 00:08:13,473 | INFO     | nevents: 400
[2026-03-02 11:08:56] 2026-03-02 00:08:13,473 | INFO     | neventsw: 0
[2026-03-02 11:08:56] 2026-03-02 00:08:13,473 | INFO     | pid: 14288
[2026-03-02 11:08:56] 2026-03-02 00:08:13,473 | INFO     | pgrp: 14288
[2026-03-02 11:08:56] 2026-03-02 00:08:13,473 | INFO     | corecount: 8
[2026-03-02 11:08:56] 2026-03-02 00:08:13,474 | INFO     | event service: False
[2026-03-02 11:08:56] 2026-03-02 00:08:13,474 | INFO     | sizes: {0: 2281853, 1: 2282314, 11: 2282314, 10523: 2310992, 10524: 2320004, 10526: 2320088, 10529: 2320474}
[2026-03-02 11:08:56] 2026-03-02 00:08:13,474 | INFO     | --------------------------------------------------
[2026-03-02 11:08:56] 2026-03-02 00:08:13,474 | INFO     | 
[2026-03-02 11:08:56] 2026-03-02 00:08:13,474 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/6
[2026-03-02 11:08:56] 2026-03-02 00:08:13,519 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-02 11:08:56] 2026-03-02 00:08:13,520 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-02 11:08:56] 2026-03-02 00:08:13,520 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-02 11:08:56] 2026-03-02 00:08:13,520 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-02 11:08:56] 2026-03-02 00:08:13,520 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-02 11:08:56] 2026-03-02 00:08:13,521 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-02 11:08:56] 2026-03-02 00:08:13,521 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-02 11:08:56] 2026-03-02 00:08:13,521 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-02 11:08:56] 2026-03-02 00:08:13,521 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-02 11:08:56] 2026-03-02 00:08:13,521 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-02 11:08:56] 2026-03-02 00:08:13,521 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-02 11:08:56] 2026-03-02 00:08:13,522 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-02 11:08:56] 2026-03-02 00:08:13,522 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-02 11:08:56] 2026-03-02 00:08:13,522 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-02 11:08:56] 2026-03-02 00:08:13,522 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-02 11:08:56] 2026-03-02 00:08:13,522 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-02 11:08:56] 2026-03-02 00:08:13,522 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-02 11:08:56] 2026-03-02 00:08:13,523 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-02 11:08:56] 2026-03-02 00:08:13,523 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-02 11:08:56] 2026-03-02 00:08:13,523 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-02 11:08:56] 2026-03-02 00:08:13,523 | INFO     | job 7035196607 has completed (purged errors)
[2026-03-02 11:08:56] 2026-03-02 00:08:13,523 | INFO     | overall cleanup function is called
[2026-03-02 11:08:56] 2026-03-02 00:08:14,534 | INFO     | --- collectZombieJob: --- 10, [14288]
[2026-03-02 11:08:56] 2026-03-02 00:08:14,535 | INFO     | zombie collector waiting for pid 14288
[2026-03-02 11:08:56] 2026-03-02 00:08:14,535 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-02 11:08:56] 2026-03-02 00:08:14,535 | INFO     | collected zombie processes
[2026-03-02 11:08:56] 2026-03-02 00:08:14,535 | INFO     | will attempt to kill all subprocesses of pid=14288
[2026-03-02 11:08:56] 2026-03-02 00:08:14,646 | INFO     | process IDs to be killed: [14288] (in reverse order)
[2026-03-02 11:08:56] 2026-03-02 00:08:14,710 | WARNING  | found no corresponding commands to process id(s)
[2026-03-02 11:08:56] 2026-03-02 00:08:14,711 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-02 11:08:56] 2026-03-02 00:08:14,715 | INFO     | did not find any defunct processes belonging to 14288
[2026-03-02 11:08:56] 2026-03-02 00:08:14,718 | INFO     | did not find any defunct processes belonging to 14288
[2026-03-02 11:08:56] 2026-03-02 00:08:14,718 | INFO     | ready for new job
[2026-03-02 11:08:56] 2026-03-02 00:08:14,719 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-02 11:08:56] 2026-03-02 00:08:14,721 | INFO     | **************************************
[2026-03-02 11:08:56] 2026-03-02 00:08:14,721 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-02 11:08:56] 2026-03-02 00:08:14,721 | INFO     | **************************************
[2026-03-02 11:08:56] 2026-03-02 00:08:14,721 | INFO     | 
[2026-03-02 11:08:56] 2026-03-02 00:08:14,722 | INFO     | architecture information:
[2026-03-02 11:08:56] 2026-03-02 00:08:14,723 | INFO     | executing command: cat /etc/os-release
[2026-03-02 11:08:56] 2026-03-02 00:08:14,743 | INFO     | cat /etc/os-release:
[2026-03-02 11:08:56] NAME="CentOS Linux"
[2026-03-02 11:08:56] VERSION="7 (Core)"
[2026-03-02 11:08:56] ID="centos"
[2026-03-02 11:08:56] ID_LIKE="rhel fedora"
[2026-03-02 11:08:56] VERSION_ID="7"
[2026-03-02 11:08:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-02 11:08:56] ANSI_COLOR="0;31"
[2026-03-02 11:08:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-02 11:08:56] HOME_URL="https://www.centos.org/"
[2026-03-02 11:08:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-02 11:08:56] 
[2026-03-02 11:08:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-02 11:08:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-02 11:08:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-02 11:08:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-02 11:08:56] 
[2026-03-02 11:08:56] 2026-03-02 00:08:14,744 | INFO     | **************************************
[2026-03-02 11:08:56] 2026-03-02 00:08:15,246 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/6
[2026-03-02 11:08:56] 2026-03-02 00:08:15,280 | INFO     | sufficient remaining disk space (18488492032 B)
[2026-03-02 11:08:56] 2026-03-02 00:08:15,281 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-02 11:08:56] 2026-03-02 00:08:15,281 | INFO     | current server update state: UPDATING_FINAL
[2026-03-02 11:08:56] 2026-03-02 00:08:15,281 | INFO     | update_server=False
[2026-03-02 11:08:56] 2026-03-02 00:08:15,281 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-02 11:08:56] 2026-03-02 00:08:15,442 | INFO     | all payload control threads have been joined
[2026-03-02 11:08:56] 2026-03-02 00:08:15,648 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-02 11:08:56] 2026-03-02 00:08:15,649 | INFO     | all job control threads have been joined
[2026-03-02 11:08:56] 2026-03-02 00:08:15,762 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-02 11:08:56] 2026-03-02 00:08:15,763 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-02 11:08:56] 2026-03-02 00:08:15,763 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-02 11:08:56] 2026-03-02 00:08:15,763 | INFO     | will abort loop
[2026-03-02 11:08:56] 2026-03-02 00:08:15,945 | INFO     | all data control threads have been joined
[2026-03-02 11:08:56] 2026-03-02 00:08:16,287 | INFO     | [job] retrieve thread has finished
[2026-03-02 11:08:56] 2026-03-02 00:08:16,412 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-02 11:08:56] 2026-03-02 00:08:16,448 | INFO     | [payload] control thread has finished
[2026-03-02 11:08:56] 2026-03-02 00:08:16,654 | INFO     | [job] control thread has finished
[2026-03-02 11:08:56] 2026-03-02 00:08:16,657 | INFO     | [payload] validate_pre thread has finished
[2026-03-02 11:08:56] 2026-03-02 00:08:16,658 | INFO     | [payload] execute_payloads thread has finished
[2026-03-02 11:08:56] 2026-03-02 00:08:16,748 | INFO     | [payload] failed_post thread has finished
[2026-03-02 11:08:56] 2026-03-02 00:08:16,768 | INFO     | [job] job monitor thread has finished
[2026-03-02 11:08:56] 2026-03-02 00:08:16,951 | INFO     | [data] control thread has finished
[2026-03-02 11:08:56] 2026-03-02 00:08:17,120 | INFO     | [data] copytool_in thread has finished
[2026-03-02 11:08:56] 2026-03-02 00:08:17,372 | INFO     | [payload] validate_post thread has finished
[2026-03-02 11:08:56] 2026-03-02 00:08:17,437 | INFO     | [job] validate thread has finished
[2026-03-02 11:08:56] 2026-03-02 00:08:17,653 | INFO     | [data] copytool_out thread has finished
[2026-03-02 11:08:56] 2026-03-02 00:08:17,746 | INFO     | [job] create_data_payload thread has finished
[2026-03-02 11:08:56] 2026-03-02 00:08:18,107 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-02 11:08:56] 2026-03-02 00:08:19,111 | INFO     | [job] queue monitor thread has finished
[2026-03-02 11:08:56] 2026-03-02 00:08:20,419 | INFO     | [data] queue_monitor thread has finished
[2026-03-02 11:08:56] 2026-03-02 00:08:25,465 | INFO     | job.realtimelogging is not enabled
[2026-03-02 11:08:56] 2026-03-02 00:08:26,470 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-02 11:08:56] 2026-03-02 00:08:44,811 | INFO     | PID=9880 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-02 11:08:56] 2026-03-02 00:08:44,811 | INFO     | found 0 job(s) in 20 queues
[2026-03-02 11:08:56] 2026-03-02 00:08:44,811 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-02 11:08:56] 2026-03-02 00:08:44,811 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-02 11:08:56] 2026-03-02 00:08:49,709 | INFO     | [monitor] cgroup control has ended
[2026-03-02 11:08:56] 2026-03-02 00:08:50,870 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 131446896232256)>', '<ExcThread(monitor, started 131445922195200)>']
[2026-03-02 11:08:56] 2026-03-02 00:08:51,845 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-02 11:08:56] 2026-03-02 00:08:51,845 | INFO     | [monitor] control thread has ended
[2026-03-02 11:08:56] 2026-03-02 00:08:55,895 | INFO     | all workflow threads have been joined
[2026-03-02 11:08:56] 2026-03-02 00:08:55,896 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-02 11:08:56] 2026-03-02 00:08:55,896 | INFO     | traces error code: 0
[2026-03-02 11:08:56] 2026-03-02 00:08:55,896 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-02 11:08:56] 2026-03-02 00:08:56,047 [wrapper] ==== pilot stdout END ====
[2026-03-02 11:08:56] 2026-03-02 00:08:56,051 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-02 11:08:56] 2026-03-02 00:08:56,054 [wrapper] pilotpid: 9880
[2026-03-02 11:08:56] 2026-03-02 00:08:56,057 [wrapper] Pilot exit status: 0
[2026-03-02 11:08:56] 2026-03-02 00:08:56,072 [wrapper] pandaids: 7035196607
[2026-03-02 11:08:56] 2026-03-02 00:08:56,128 [wrapper] cleanup supervisor_pilot   20400 9881
[2026-03-02 11:08:56] 2026-03-02 00:08:56,132 [wrapper] Test setup, not cleaning
[2026-03-02 11:08:56] 2026-03-02 00:08:56,135 [wrapper] apfmon messages muted
[2026-03-02 11:08:56] 2026-03-02 00:08:56,139 [wrapper] ==== wrapper stdout END ====
[2026-03-02 11:08:56] 2026-03-02 00:08:56,144 [wrapper] ==== wrapper stderr END ====
[2026-03-02 11:08:56]  *** Error codes and diagnostics ***
[2026-03-02 11:08:56]     "exeErrorCode": 0,
[2026-03-02 11:08:56]     "exeErrorDiag": "",
[2026-03-02 11:08:56]     "pilotErrorCode": 0,
[2026-03-02 11:08:56]     "pilotErrorDiag": "",
[2026-03-02 11:08:56]  *** Listing of results directory ***
[2026-03-02 11:08:56] total 507764
[2026-03-02 11:08:56] -rw-r--r-- 1 boinc boinc    584627 Mar  2 02:13 pilot3.tar.gz
[2026-03-02 11:08:56] -rwx------ 1 boinc boinc     36322 Mar  2 02:14 runpilot2-wrapper.sh
[2026-03-02 11:08:56] -rw-r--r-- 1 boinc boinc      5111 Mar  2 02:14 queuedata.json
[2026-03-02 11:08:56] -rw-r--r-- 1 boinc boinc       100 Mar  2 08:10 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-02 11:08:56] -rwxr-xr-x 1 boinc boinc      7986 Mar  2 08:10 run_atlas
[2026-03-02 11:08:56] -rw-r--r-- 1 boinc boinc       105 Mar  2 08:10 job.xml
[2026-03-02 11:08:56] -rw-r--r-- 2 boinc boinc 290281135 Mar  2 08:10 EVNT.48220085._000375.pool.root.1
[2026-03-02 11:08:56] -rw-r--r-- 2 boinc boinc    597968 Mar  2 08:10 input.tar.gz
[2026-03-02 11:08:56] drwxrwx--x 2 boinc boinc      4096 Mar  2 08:10 shared
[2026-03-02 11:08:56] -rw-r--r-- 2 boinc boinc     15845 Mar  2 08:10 start_atlas.sh
[2026-03-02 11:08:56] -rw-r--r-- 1 boinc boinc         0 Mar  2 08:10 boinc_setup_complete
[2026-03-02 11:08:56] -rw-r--r-- 1 boinc boinc      9207 Mar  2 08:10 init_data.xml
[2026-03-02 11:08:56] -rw-r--r-- 1 boinc boinc         0 Mar  2 08:10 boinc_lockfile
[2026-03-02 11:08:56] -rw-r--r-- 1 boinc boinc      2567 Mar  2 08:11 pandaJob.out
[2026-03-02 11:08:56] -rw------- 1 boinc boinc    998184 Mar  2 08:12 agis_schedconf.cvmfs.json
[2026-03-02 11:08:56] -rw------- 1 boinc boinc   1513015 Mar  2 08:12 agis_ddmendpoints.agis.ALL.json
[2026-03-02 11:08:56] -rw------- 1 boinc boinc       416 Mar  2 08:12 workernode_map.json
[2026-03-02 11:08:56] drwx------ 5 boinc boinc      4096 Mar  2 08:12 pilot3
[2026-03-02 11:08:56] -rw------- 1 boinc boinc 222002738 Mar  2 11:07 HITS.48838416._009600.pool.root.1
[2026-03-02 11:08:56] -rw-r--r-- 1 boinc boinc       530 Mar  2 11:07 boinc_task_state.xml
[2026-03-02 11:08:56] -rw------- 1 boinc boinc        95 Mar  2 11:07 pilot_heartbeat.json
[2026-03-02 11:08:56] -rw------- 1 boinc boinc      1027 Mar  2 11:08 memory_monitor_summary.json
[2026-03-02 11:08:56] -rw------- 1 boinc boinc    418461 Mar  2 11:08 log.48838416._009600.job.log.tgz.1
[2026-03-02 11:08:56] -rw------- 1 boinc boinc      6317 Mar  2 11:08 heartbeat.json
[2026-03-02 11:08:56] -rw-r--r-- 1 boinc boinc      8192 Mar  2 11:08 boinc_mmap_file
[2026-03-02 11:08:56] -rw-r--r-- 1 boinc boinc        28 Mar  2 11:08 wrapper_checkpoint.txt
[2026-03-02 11:08:56] -rw------- 1 boinc boinc      5006 Mar  2 11:08 pilotlog.txt
[2026-03-02 11:08:56] -rw------- 1 boinc boinc   1449447 Mar  2 11:08 log.48838416._009600.job.log.1
[2026-03-02 11:08:56] -rw------- 1 boinc boinc       357 Mar  2 11:08 output.list
[2026-03-02 11:08:56] -rw-r--r-- 1 boinc boinc       620 Mar  2 11:08 runtime_log
[2026-03-02 11:08:56] -rw------- 1 boinc boinc   1884160 Mar  2 11:08 result.tar.gz
[2026-03-02 11:08:56] -rw------- 1 boinc boinc       644 Mar  2 11:08 tnfNDmwfxG9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmTqALDmOhQ3Hn.diag
[2026-03-02 11:08:56] -rw-r--r-- 1 boinc boinc      8864 Mar  2 11:08 runtime_log.err
[2026-03-02 11:08:56] -rw-r--r-- 1 boinc boinc     20738 Mar  2 11:08 stderr.txt
[2026-03-02 11:08:56] HITS file was successfully produced:
[2026-03-02 11:08:56] -rw------- 1 boinc boinc 222002738 Mar  2 11:07 shared/HITS.pool.root.1
[2026-03-02 11:08:56]  *** Contents of shared directory: ***
[2026-03-02 11:08:56] total 502728
[2026-03-02 11:08:56] -rw-r--r-- 2 boinc boinc 290281135 Mar  2 08:10 ATLAS.root_0
[2026-03-02 11:08:56] -rw-r--r-- 2 boinc boinc    597968 Mar  2 08:10 input.tar.gz
[2026-03-02 11:08:56] -rw-r--r-- 2 boinc boinc     15845 Mar  2 08:10 start_atlas.sh
[2026-03-02 11:08:56] -rw------- 1 boinc boinc 222002738 Mar  2 11:07 HITS.pool.root.1
[2026-03-02 11:08:56] -rw------- 1 boinc boinc   1884160 Mar  2 11:08 result.tar.gz
11:08:57 (5583): run_atlas exited; CPU time 74145.091031
11:08:57 (5583): called boinc_finish(0)

</stderr_txt>
]]>

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