Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:09:09 (116410): wrapper (7.7.26015): starting
06:09:09 (116410): wrapper: running run_atlas (--nthreads 4)
[2026-03-02 06:09:09] Arguments: --nthreads 4
[2026-03-02 06:09:09] Threads: 4
[2026-03-02 06:09:09] Checking for CVMFS
[2026-03-02 06:09:09] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-02 06:09:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-02 06:09:09] Running cvmfs_config stat atlas.cern.ch
[2026-03-02 06:09:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-02 06:09:09] 2.9.2.0 3007 566 73396 156795 3 50 27912040 36864000 0 130560 0 317840 99.990 21421 18757 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-02 06:09:09] CVMFS is ok
[2026-03-02 06:09:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-02 06:09:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-02 06:09:09] Further information can be found at the LHC@home message board.
[2026-03-02 06:09:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-02 06:09:09] Checking for apptainer binary...
[2026-03-02 06:09:09] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-02 06:09:09] Running /usr/bin/apptainer --version
[2026-03-02 06:09:09] apptainer version 1.4.1-1.1
[2026-03-02 06:09:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-02 06:09:09] atlasA215b
[2026-03-02 06:09:09] apptainer works
[2026-03-02 06:09:09] Set ATHENA_PROC_NUMBER=4
[2026-03-02 06:09:09] Set ATHENA_CORE_NUMBER=4
[2026-03-02 06:09:09] Starting ATLAS job with PandaID=7035356292
[2026-03-02 06:09:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-02 07:31:56]  *** The last 200 lines of the pilot log: ***
[2026-03-02 07:31:56] 2026-03-02 06:31:25,698 | INFO     | will attempt to kill all subprocesses of pid=125032
[2026-03-02 07:31:56] 2026-03-02 06:31:25,740 | INFO     | process IDs to be killed: [125032] (in reverse order)
[2026-03-02 07:31:56] 2026-03-02 06:31:25,774 | WARNING  | found no corresponding commands to process id(s)
[2026-03-02 07:31:56] 2026-03-02 06:31:25,774 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-02 07:31:56] 2026-03-02 06:31:25,776 | INFO     | did not find any defunct processes belonging to 125032
[2026-03-02 07:31:56] 2026-03-02 06:31:25,777 | INFO     | did not find any defunct processes belonging to 125032
[2026-03-02 07:31:56] 2026-03-02 06:31:25,777 | INFO     | ready for new job
[2026-03-02 07:31:56] 2026-03-02 06:31:25,777 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-02 07:31:56] 2026-03-02 06:31:25,778 | INFO     | **************************************
[2026-03-02 07:31:56] 2026-03-02 06:31:25,778 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-02 07:31:56] 2026-03-02 06:31:25,778 | INFO     | **************************************
[2026-03-02 07:31:56] 2026-03-02 06:31:25,778 | INFO     | 
[2026-03-02 07:31:56] 2026-03-02 06:31:25,779 | INFO     | architecture information:
[2026-03-02 07:31:56] 2026-03-02 06:31:25,779 | INFO     | executing command: cat /etc/os-release
[2026-03-02 07:31:56] 2026-03-02 06:31:25,794 | INFO     | cat /etc/os-release:
[2026-03-02 07:31:56] NAME="CentOS Linux"
[2026-03-02 07:31:56] VERSION="7 (Core)"
[2026-03-02 07:31:56] ID="centos"
[2026-03-02 07:31:56] ID_LIKE="rhel fedora"
[2026-03-02 07:31:56] VERSION_ID="7"
[2026-03-02 07:31:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-02 07:31:56] ANSI_COLOR="0;31"
[2026-03-02 07:31:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-02 07:31:56] HOME_URL="https://www.centos.org/"
[2026-03-02 07:31:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-02 07:31:56] 
[2026-03-02 07:31:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-02 07:31:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-02 07:31:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-02 07:31:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-02 07:31:56] 
[2026-03-02 07:31:56] 2026-03-02 06:31:25,794 | INFO     | **************************************
[2026-03-02 07:31:56] 2026-03-02 06:31:26,298 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-02 07:31:56] 2026-03-02 06:31:26,317 | INFO     | sufficient remaining disk space (331279761408 B)
[2026-03-02 07:31:56] 2026-03-02 06:31:26,317 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-02 07:31:56] 2026-03-02 06:31:26,317 | INFO     | current server update state: UPDATING_FINAL
[2026-03-02 07:31:56] 2026-03-02 06:31:26,317 | INFO     | update_server=False
[2026-03-02 07:31:56] 2026-03-02 06:31:26,317 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-02 07:31:56] 2026-03-02 06:31:26,317 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-02 07:31:56] 2026-03-02 06:31:26,477 | INFO     | all data control threads have been joined
[2026-03-02 07:31:56] 2026-03-02 06:31:26,605 | INFO     | all payload control threads have been joined
[2026-03-02 07:31:56] 2026-03-02 06:31:26,664 | WARNING  | process 125032 can no longer be monitored (due to stat problems) - aborting
[2026-03-02 07:31:56] 2026-03-02 06:31:26,696 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-02 07:31:56] 2026-03-02 06:31:26,735 | INFO     | number of running child processes to parent process 125032: 1
[2026-03-02 07:31:56] 2026-03-02 06:31:26,735 | INFO     | maximum number of monitored processes: 6
[2026-03-02 07:31:56] 2026-03-02 06:31:26,735 | INFO     | aborting job monitoring since job object (job id=7035356292) has expired
[2026-03-02 07:31:56] 2026-03-02 06:31:26,735 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-02 07:31:56] 2026-03-02 06:31:26,735 | INFO     | will abort loop
[2026-03-02 07:31:56] 2026-03-02 06:31:26,908 | INFO     | all job control threads have been joined
[2026-03-02 07:31:56] 2026-03-02 06:31:27,323 | INFO     | [job] retrieve thread has finished
[2026-03-02 07:31:56] 2026-03-02 06:31:27,345 | INFO     | [job] create_data_payload thread has finished
[2026-03-02 07:31:56] 2026-03-02 06:31:27,373 | INFO     | [payload] validate_pre thread has finished
[2026-03-02 07:31:56] 2026-03-02 06:31:27,483 | INFO     | [data] control thread has finished
[2026-03-02 07:31:56] 2026-03-02 06:31:27,524 | INFO     | [data] copytool_in thread has finished
[2026-03-02 07:31:56] 2026-03-02 06:31:27,611 | INFO     | [payload] control thread has finished
[2026-03-02 07:31:56] 2026-03-02 06:31:27,672 | INFO     | [payload] execute_payloads thread has finished
[2026-03-02 07:31:56] 2026-03-02 06:31:27,740 | INFO     | [job] job monitor thread has finished
[2026-03-02 07:31:56] 2026-03-02 06:31:27,902 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-02 07:31:56] 2026-03-02 06:31:27,914 | INFO     | [job] control thread has finished
[2026-03-02 07:31:56] 2026-03-02 06:31:27,994 | INFO     | [payload] validate_post thread has finished
[2026-03-02 07:31:56] 2026-03-02 06:31:28,323 | INFO     | [data] copytool_out thread has finished
[2026-03-02 07:31:56] 2026-03-02 06:31:28,703 | INFO     | [job] validate thread has finished
[2026-03-02 07:31:56] 2026-03-02 06:31:28,769 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-02 07:31:56] 2026-03-02 06:31:28,873 | INFO     | [payload] failed_post thread has finished
[2026-03-02 07:31:56] 2026-03-02 06:31:28,931 | INFO     | [monitor] cgroup control has ended
[2026-03-02 07:31:56] 2026-03-02 06:31:29,259 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-02 07:31:56] 2026-03-02 06:31:30,265 | INFO     | [job] queue monitor thread has finished
[2026-03-02 07:31:56] 2026-03-02 06:31:32,776 | INFO     | [data] queue_monitor thread has finished
[2026-03-02 07:31:56] 2026-03-02 06:31:34,299 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139715420084032)>', '<ExcThread(monitor, started 139714321434368)>']
[2026-03-02 07:31:56] 2026-03-02 06:31:39,320 | INFO     | all workflow threads have been joined
[2026-03-02 07:31:56] 2026-03-02 06:31:39,320 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-02 07:31:56] 2026-03-02 06:31:39,321 | INFO     | traces error code: 0
[2026-03-02 07:31:56] 2026-03-02 06:31:39,321 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-02 07:31:56] 2026-03-02 06:31:56,186 | INFO     | PID=120513 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-02 07:31:56] 2026-03-02 06:31:56,186 | INFO     | found 0 job(s) in 20 queues
[2026-03-02 07:31:56] 2026-03-02 06:31:56,186 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-02 07:31:56] 2026-03-02 06:31:56,186 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-02 07:31:56] 2026-03-02 06:31:56,186 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-02 07:31:56] 2026-03-02 06:31:56,186 | INFO     | [monitor] control thread has ended
[2026-03-02 07:31:56] 2026-03-02 06:31:56,262 [wrapper] ==== pilot stdout END ====
[2026-03-02 07:31:56] 2026-03-02 06:31:56,267 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-02 07:31:56] 2026-03-02 06:31:56,271 [wrapper] pilotpid: 120513
[2026-03-02 07:31:56] 2026-03-02 06:31:56,276 [wrapper] Pilot exit status: 0
[2026-03-02 07:31:56] 2026-03-02 06:31:56,289 [wrapper] pandaids: 7035356292
[2026-03-02 07:31:56] 2026-03-02 06:31:56,310 [wrapper] cleanup supervisor_pilot  130446 120514
[2026-03-02 07:31:56] 2026-03-02 06:31:56,315 [wrapper] Test setup, not cleaning
[2026-03-02 07:31:56] 2026-03-02 06:31:56,319 [wrapper] apfmon messages muted
[2026-03-02 07:31:56] 2026-03-02 06:31:56,323 [wrapper] ==== wrapper stdout END ====
[2026-03-02 07:31:56] 2026-03-02 06:31:56,327 [wrapper] ==== wrapper stderr END ====
[2026-03-02 07:31:56]  *** Error codes and diagnostics ***
[2026-03-02 07:31:56]     "exeErrorCode": 0,
[2026-03-02 07:31:56]     "exeErrorDiag": "",
[2026-03-02 07:31:56]     "pilotErrorCode": 0,
[2026-03-02 07:31:56]     "pilotErrorDiag": "",
[2026-03-02 07:31:56]  *** Listing of results directory ***
[2026-03-02 07:31:56] total 485108
[2026-03-02 07:31:56] -rw-r--r-- 1 boinc boinc    584627 Mar  1 18:22 pilot3.tar.gz
[2026-03-02 07:31:56] -rwx------ 1 boinc boinc     36322 Mar  1 18:23 runpilot2-wrapper.sh
[2026-03-02 07:31:56] -rw-r--r-- 1 boinc boinc      5111 Mar  1 18:24 queuedata.json
[2026-03-02 07:31:56] -rw-r--r-- 1 boinc boinc       100 Mar  2 06:09 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-02 07:31:56] -rwxr-xr-x 1 boinc boinc      7986 Mar  2 06:09 run_atlas
[2026-03-02 07:31:56] -rw-r--r-- 1 boinc boinc       105 Mar  2 06:09 job.xml
[2026-03-02 07:31:56] -rw-r--r-- 2 boinc boinc 276768186 Mar  2 06:09 EVNT.48220133._000190.pool.root.1
[2026-03-02 07:31:56] -rw-r--r-- 2 boinc boinc    597968 Mar  2 06:09 input.tar.gz
[2026-03-02 07:31:56] -rw-r--r-- 2 boinc boinc     15845 Mar  2 06:09 start_atlas.sh
[2026-03-02 07:31:56] drwxrwx--x 2 boinc boinc      4096 Mar  2 06:09 shared
[2026-03-02 07:31:56] -rw-r--r-- 1 boinc boinc         0 Mar  2 06:09 boinc_setup_complete
[2026-03-02 07:31:56] -rw-r--r-- 1 boinc boinc      6372 Mar  2 06:09 init_data.xml
[2026-03-02 07:31:56] -rw-r--r-- 1 boinc boinc         0 Mar  2 06:09 boinc_lockfile
[2026-03-02 07:31:56] -rw-r--r-- 1 boinc boinc      2562 Mar  2 06:09 pandaJob.out
[2026-03-02 07:31:56] -rw------- 1 boinc boinc    998242 Mar  2 06:09 agis_schedconf.cvmfs.json
[2026-03-02 07:31:56] -rw------- 1 boinc boinc   1513015 Mar  2 06:09 agis_ddmendpoints.agis.ALL.json
[2026-03-02 07:31:56] -rw------- 1 boinc boinc       431 Mar  2 06:09 workernode_map.json
[2026-03-02 07:31:56] drwx------ 5 boinc boinc      4096 Mar  2 06:09 pilot3
[2026-03-02 07:31:56] -rw-r--r-- 1 boinc boinc       529 Mar  2 07:30 boinc_task_state.xml
[2026-03-02 07:31:56] -rw------- 1 boinc boinc 214089738 Mar  2 07:31 HITS.48838462._004360.pool.root.1
[2026-03-02 07:31:56] -rw------- 1 boinc boinc      1022 Mar  2 07:31 memory_monitor_summary.json
[2026-03-02 07:31:56] -rw------- 1 boinc boinc    269277 Mar  2 07:31 log.48838462._004360.job.log.tgz.1
[2026-03-02 07:31:56] -rw------- 1 boinc boinc      6330 Mar  2 07:31 heartbeat.json
[2026-03-02 07:31:56] -rw-r--r-- 1 boinc boinc      8192 Mar  2 07:31 boinc_mmap_file
[2026-03-02 07:31:56] -rw-r--r-- 1 boinc boinc        27 Mar  2 07:31 wrapper_checkpoint.txt
[2026-03-02 07:31:56] -rw------- 1 boinc boinc       746 Mar  2 07:31 pilotlog.txt
[2026-03-02 07:31:56] -rw------- 1 boinc boinc        95 Mar  2 07:31 pilot_heartbeat.json
[2026-03-02 07:31:56] -rw------- 1 boinc boinc    720950 Mar  2 07:31 log.48838462._004360.job.log.1
[2026-03-02 07:31:56] -rw------- 1 boinc boinc       357 Mar  2 07:31 output.list
[2026-03-02 07:31:56] -rw-r--r-- 1 boinc boinc       620 Mar  2 07:31 runtime_log
[2026-03-02 07:31:56] -rw------- 1 boinc boinc   1003520 Mar  2 07:31 result.tar.gz
[2026-03-02 07:31:56] -rw-r--r-- 1 boinc boinc      8916 Mar  2 07:31 runtime_log.err
[2026-03-02 07:31:56] -rw------- 1 boinc boinc       661 Mar  2 07:31 V4wLDm7gzG9n9Rq4apOajLDm4fhM0noT9bVooX4SDmPG9KDm17ajWo.diag
[2026-03-02 07:31:56] -rw-r--r-- 1 boinc boinc     10815 Mar  2 07:31 stderr.txt
[2026-03-02 07:31:56] HITS file was successfully produced:
[2026-03-02 07:31:56] -rw------- 1 boinc boinc 214089738 Mar  2 07:31 shared/HITS.pool.root.1
[2026-03-02 07:31:56]  *** Contents of shared directory: ***
[2026-03-02 07:31:56] total 480948
[2026-03-02 07:31:56] -rw-r--r-- 2 boinc boinc 276768186 Mar  2 06:09 ATLAS.root_0
[2026-03-02 07:31:56] -rw-r--r-- 2 boinc boinc    597968 Mar  2 06:09 input.tar.gz
[2026-03-02 07:31:56] -rw-r--r-- 2 boinc boinc     15845 Mar  2 06:09 start_atlas.sh
[2026-03-02 07:31:56] -rw------- 1 boinc boinc 214089738 Mar  2 07:31 HITS.pool.root.1
[2026-03-02 07:31:56] -rw------- 1 boinc boinc   1003520 Mar  2 07:31 result.tar.gz
07:31:57 (116410): run_atlas exited; CPU time 18589.809542
07:31:57 (116410): called boinc_finish(0)

</stderr_txt>
]]>

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