Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:32:01 (130771): wrapper (7.7.26015): starting
07:32:01 (130771): wrapper: running run_atlas (--nthreads 4)
[2026-03-02 07:32:01] Arguments: --nthreads 4
[2026-03-02 07:32:01] Threads: 4
[2026-03-02 07:32:01] Checking for CVMFS
[2026-03-02 07:32:01] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-02 07:32:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-02 07:32:01] Running cvmfs_config stat atlas.cern.ch
[2026-03-02 07:32:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-02 07:32:01] 2.9.2.0 3007 648 73896 156797 0 50 27927880 36864000 0 130560 0 357775 99.988 24472 18567 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-02 07:32:01] CVMFS is ok
[2026-03-02 07:32:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-02 07:32:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-02 07:32:01] Further information can be found at the LHC@home message board.
[2026-03-02 07:32:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-02 07:32:01] Checking for apptainer binary...
[2026-03-02 07:32:01] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-02 07:32:01] Running /usr/bin/apptainer --version
[2026-03-02 07:32:01] apptainer version 1.4.1-1.1
[2026-03-02 07:32:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-02 07:32:01] atlasA215b
[2026-03-02 07:32:01] apptainer works
[2026-03-02 07:32:01] Set ATHENA_PROC_NUMBER=4
[2026-03-02 07:32:01] Set ATHENA_CORE_NUMBER=4
[2026-03-02 07:32:01] Starting ATLAS job with PandaID=7035202938
[2026-03-02 07:32:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-02 08:31:34]  *** The last 200 lines of the pilot log: ***
[2026-03-02 08:31:34] 2026-03-02 07:31:13,784 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-02 08:31:34] 2026-03-02 07:31:13,784 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-02 08:31:34] 2026-03-02 07:31:13,784 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-02 08:31:34] 2026-03-02 07:31:13,784 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-02 08:31:34] 2026-03-02 07:31:13,784 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-02 08:31:34] 2026-03-02 07:31:13,784 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-02 08:31:34] 2026-03-02 07:31:13,784 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-02 08:31:34] 2026-03-02 07:31:13,784 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-02 08:31:34] 2026-03-02 07:31:13,784 | INFO     | job 7035202938 has completed (purged errors)
[2026-03-02 08:31:34] 2026-03-02 07:31:13,784 | INFO     | overall cleanup function is called
[2026-03-02 08:31:34] 2026-03-02 07:31:14,791 | INFO     | --- collectZombieJob: --- 10, [139394]
[2026-03-02 08:31:34] 2026-03-02 07:31:14,791 | INFO     | zombie collector waiting for pid 139394
[2026-03-02 08:31:34] 2026-03-02 07:31:14,791 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-02 08:31:34] 2026-03-02 07:31:14,792 | INFO     | collected zombie processes
[2026-03-02 08:31:34] 2026-03-02 07:31:14,792 | INFO     | will attempt to kill all subprocesses of pid=139394
[2026-03-02 08:31:34] 2026-03-02 07:31:14,833 | INFO     | process IDs to be killed: [139394] (in reverse order)
[2026-03-02 08:31:34] 2026-03-02 07:31:14,866 | WARNING  | found no corresponding commands to process id(s)
[2026-03-02 08:31:34] 2026-03-02 07:31:14,867 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-02 08:31:34] 2026-03-02 07:31:14,868 | INFO     | did not find any defunct processes belonging to 139394
[2026-03-02 08:31:34] 2026-03-02 07:31:14,869 | INFO     | did not find any defunct processes belonging to 139394
[2026-03-02 08:31:34] 2026-03-02 07:31:14,869 | INFO     | ready for new job
[2026-03-02 08:31:34] 2026-03-02 07:31:14,869 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-02 08:31:34] 2026-03-02 07:31:14,870 | INFO     | **************************************
[2026-03-02 08:31:34] 2026-03-02 07:31:14,870 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-02 08:31:34] 2026-03-02 07:31:14,870 | INFO     | **************************************
[2026-03-02 08:31:34] 2026-03-02 07:31:14,870 | INFO     | 
[2026-03-02 08:31:34] 2026-03-02 07:31:14,871 | INFO     | architecture information:
[2026-03-02 08:31:34] 2026-03-02 07:31:14,871 | INFO     | executing command: cat /etc/os-release
[2026-03-02 08:31:34] 2026-03-02 07:31:14,886 | INFO     | cat /etc/os-release:
[2026-03-02 08:31:34] NAME="CentOS Linux"
[2026-03-02 08:31:34] VERSION="7 (Core)"
[2026-03-02 08:31:34] ID="centos"
[2026-03-02 08:31:34] ID_LIKE="rhel fedora"
[2026-03-02 08:31:34] VERSION_ID="7"
[2026-03-02 08:31:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-02 08:31:34] ANSI_COLOR="0;31"
[2026-03-02 08:31:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-02 08:31:34] HOME_URL="https://www.centos.org/"
[2026-03-02 08:31:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-02 08:31:34] 
[2026-03-02 08:31:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-02 08:31:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-02 08:31:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-02 08:31:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-02 08:31:34] 
[2026-03-02 08:31:34] 2026-03-02 07:31:14,886 | INFO     | **************************************
[2026-03-02 08:31:34] 2026-03-02 07:31:15,389 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-02 08:31:34] 2026-03-02 07:31:15,409 | INFO     | sufficient remaining disk space (331424464896 B)
[2026-03-02 08:31:34] 2026-03-02 07:31:15,409 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-02 08:31:34] 2026-03-02 07:31:15,409 | INFO     | current server update state: UPDATING_FINAL
[2026-03-02 08:31:34] 2026-03-02 07:31:15,409 | INFO     | update_server=False
[2026-03-02 08:31:34] 2026-03-02 07:31:15,409 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-02 08:31:34] 2026-03-02 07:31:15,409 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-02 08:31:34] 2026-03-02 07:31:15,409 | INFO     | aborting loop
[2026-03-02 08:31:34] 2026-03-02 07:31:15,409 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-02 08:31:34] 2026-03-02 07:31:15,410 | INFO     | found 0 job(s) in 20 queues
[2026-03-02 08:31:34] 2026-03-02 07:31:15,410 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-02 08:31:34] 2026-03-02 07:31:15,410 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-02 08:31:34] 2026-03-02 07:31:15,410 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-02 08:31:34] 2026-03-02 07:31:15,607 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-02 08:31:34] 2026-03-02 07:31:15,864 | INFO     | all data control threads have been joined
[2026-03-02 08:31:34] 2026-03-02 07:31:16,415 | INFO     | [job] retrieve thread has finished
[2026-03-02 08:31:34] 2026-03-02 07:31:16,415 | INFO     | [job] job monitor thread has finished
[2026-03-02 08:31:34] 2026-03-02 07:31:16,415 | INFO     | [job] queue monitor thread has finished
[2026-03-02 08:31:34] 2026-03-02 07:31:16,425 | INFO     | [data] copytool_in thread has finished
[2026-03-02 08:31:34] 2026-03-02 07:31:16,469 | INFO     | [payload] execute_payloads thread has finished
[2026-03-02 08:31:34] 2026-03-02 07:31:16,609 | INFO     | [payload] failed_post thread has finished
[2026-03-02 08:31:34] 2026-03-02 07:31:16,737 | INFO     | all payload control threads have been joined
[2026-03-02 08:31:34] 2026-03-02 07:31:16,870 | INFO     | [data] control thread has finished
[2026-03-02 08:31:34] 2026-03-02 07:31:16,978 | INFO     | all job control threads have been joined
[2026-03-02 08:31:34] 2026-03-02 07:31:17,148 | INFO     | [payload] validate_post thread has finished
[2026-03-02 08:31:34] 2026-03-02 07:31:17,559 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-02 08:31:34] 2026-03-02 07:31:17,564 | INFO     | [job] validate thread has finished
[2026-03-02 08:31:34] 2026-03-02 07:31:17,613 | INFO     | [data] copytool_out thread has finished
[2026-03-02 08:31:34] 2026-03-02 07:31:17,717 | INFO     | [job] create_data_payload thread has finished
[2026-03-02 08:31:34] 2026-03-02 07:31:17,743 | INFO     | [payload] control thread has finished
[2026-03-02 08:31:34] 2026-03-02 07:31:17,755 | INFO     | [payload] validate_pre thread has finished
[2026-03-02 08:31:34] 2026-03-02 07:31:17,984 | INFO     | [job] control thread has finished
[2026-03-02 08:31:34] 2026-03-02 07:31:18,395 | INFO     | [monitor] cgroup control has ended
[2026-03-02 08:31:34] 2026-03-02 07:31:21,566 | INFO     | [data] queue_monitor thread has finished
[2026-03-02 08:31:34] 2026-03-02 07:31:26,054 | INFO     | job.realtimelogging is not enabled
[2026-03-02 08:31:34] 2026-03-02 07:31:27,059 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-02 08:31:34] 2026-03-02 07:31:29,034 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139658755487552)>', '<ExcThread(monitor, started 139657790592768)>']
[2026-03-02 08:31:34] 2026-03-02 07:31:29,483 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-02 08:31:34] 2026-03-02 07:31:29,484 | INFO     | [monitor] control thread has ended
[2026-03-02 08:31:34] 2026-03-02 07:31:34,059 | INFO     | all workflow threads have been joined
[2026-03-02 08:31:34] 2026-03-02 07:31:34,060 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-02 08:31:34] 2026-03-02 07:31:34,061 | INFO     | traces error code: 0
[2026-03-02 08:31:34] 2026-03-02 07:31:34,061 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-02 08:31:34] 2026-03-02 07:31:34,138 [wrapper] ==== pilot stdout END ====
[2026-03-02 08:31:34] 2026-03-02 07:31:34,142 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-02 08:31:34] 2026-03-02 07:31:34,146 [wrapper] pilotpid: 134891
[2026-03-02 08:31:34] 2026-03-02 07:31:34,150 [wrapper] Pilot exit status: 0
[2026-03-02 08:31:34] 2026-03-02 07:31:34,162 [wrapper] pandaids: 7035202938
[2026-03-02 08:31:34] 2026-03-02 07:31:34,184 [wrapper] cleanup supervisor_pilot  144303 134892
[2026-03-02 08:31:34] 2026-03-02 07:31:34,188 [wrapper] Test setup, not cleaning
[2026-03-02 08:31:34] 2026-03-02 07:31:34,192 [wrapper] apfmon messages muted
[2026-03-02 08:31:34] 2026-03-02 07:31:34,196 [wrapper] ==== wrapper stdout END ====
[2026-03-02 08:31:34] 2026-03-02 07:31:34,200 [wrapper] ==== wrapper stderr END ====
[2026-03-02 08:31:34]  *** Error codes and diagnostics ***
[2026-03-02 08:31:34]     "exeErrorCode": 0,
[2026-03-02 08:31:34]     "exeErrorDiag": "",
[2026-03-02 08:31:34]     "pilotErrorCode": 0,
[2026-03-02 08:31:34]     "pilotErrorDiag": "",
[2026-03-02 08:31:34]  *** Listing of results directory ***
[2026-03-02 08:31:34] total 335768
[2026-03-02 08:31:34] -rw-r--r-- 1 boinc boinc    584627 Mar  1 17:16 pilot3.tar.gz
[2026-03-02 08:31:34] -rwx------ 1 boinc boinc     36322 Mar  1 17:18 runpilot2-wrapper.sh
[2026-03-02 08:31:34] -rw-r--r-- 1 boinc boinc      5111 Mar  1 17:19 queuedata.json
[2026-03-02 08:31:34] -rw-r--r-- 1 boinc boinc       100 Mar  2 07:32 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-02 08:31:34] -rwxr-xr-x 1 boinc boinc      7986 Mar  2 07:32 run_atlas
[2026-03-02 08:31:34] -rw-r--r-- 1 boinc boinc       105 Mar  2 07:32 job.xml
[2026-03-02 08:31:34] -rw-r--r-- 2 boinc boinc 187295764 Mar  2 07:32 EVNT.48700872._000014.pool.root.1
[2026-03-02 08:31:34] drwxrwx--x 2 boinc boinc      4096 Mar  2 07:32 shared
[2026-03-02 08:31:34] -rw-r--r-- 2 boinc boinc    597955 Mar  2 07:32 input.tar.gz
[2026-03-02 08:31:34] -rw-r--r-- 2 boinc boinc     15845 Mar  2 07:32 start_atlas.sh
[2026-03-02 08:31:34] -rw-r--r-- 1 boinc boinc         0 Mar  2 07:32 boinc_setup_complete
[2026-03-02 08:31:34] -rw-r--r-- 1 boinc boinc      6372 Mar  2 07:32 init_data.xml
[2026-03-02 08:31:34] -rw-r--r-- 1 boinc boinc         0 Mar  2 07:32 boinc_lockfile
[2026-03-02 08:31:34] -rw-r--r-- 1 boinc boinc      2548 Mar  2 07:32 pandaJob.out
[2026-03-02 08:31:34] -rw------- 1 boinc boinc    998242 Mar  2 07:32 agis_schedconf.cvmfs.json
[2026-03-02 08:31:34] -rw------- 1 boinc boinc   1513015 Mar  2 07:32 agis_ddmendpoints.agis.ALL.json
[2026-03-02 08:31:34] -rw------- 1 boinc boinc       424 Mar  2 07:32 workernode_map.json
[2026-03-02 08:31:34] drwx------ 5 boinc boinc      4096 Mar  2 07:32 pilot3
[2026-03-02 08:31:34] -rw------- 1 boinc boinc        95 Mar  2 08:30 pilot_heartbeat.json
[2026-03-02 08:31:34] -rw------- 1 boinc boinc 151032244 Mar  2 08:30 HITS.48700874._000349.pool.root.1
[2026-03-02 08:31:34] -rw-r--r-- 1 boinc boinc       529 Mar  2 08:31 boinc_task_state.xml
[2026-03-02 08:31:34] -rw------- 1 boinc boinc      1018 Mar  2 08:31 memory_monitor_summary.json
[2026-03-02 08:31:34] -rw------- 1 boinc boinc    261932 Mar  2 08:31 log.48700874._000349.job.log.tgz.1
[2026-03-02 08:31:34] -rw------- 1 boinc boinc      6322 Mar  2 08:31 heartbeat.json
[2026-03-02 08:31:34] -rw-r--r-- 1 boinc boinc      8192 Mar  2 08:31 boinc_mmap_file
[2026-03-02 08:31:34] -rw-r--r-- 1 boinc boinc        27 Mar  2 08:31 wrapper_checkpoint.txt
[2026-03-02 08:31:34] -rw------- 1 boinc boinc      4624 Mar  2 08:31 pilotlog.txt
[2026-03-02 08:31:34] -rw------- 1 boinc boinc    531415 Mar  2 08:31 log.48700874._000349.job.log.1
[2026-03-02 08:31:34] -rw------- 1 boinc boinc       357 Mar  2 08:31 output.list
[2026-03-02 08:31:34] -rw-r--r-- 1 boinc boinc       620 Mar  2 08:31 runtime_log
[2026-03-02 08:31:34] -rw------- 1 boinc boinc    808960 Mar  2 08:31 result.tar.gz
[2026-03-02 08:31:34] -rw------- 1 boinc boinc       661 Mar  2 08:31 uuJLDmofyG9n9Rq4apOajLDm4fhM0noT9bVooX4SDmQ88KDmIrlbQo.diag
[2026-03-02 08:31:34] -rw-r--r-- 1 boinc boinc      8916 Mar  2 08:31 runtime_log.err
[2026-03-02 08:31:34] -rw-r--r-- 1 boinc boinc     11621 Mar  2 08:31 stderr.txt
[2026-03-02 08:31:34] HITS file was successfully produced:
[2026-03-02 08:31:34] -rw------- 1 boinc boinc 151032244 Mar  2 08:30 shared/HITS.pool.root.1
[2026-03-02 08:31:34]  *** Contents of shared directory: ***
[2026-03-02 08:31:34] total 331800
[2026-03-02 08:31:34] -rw-r--r-- 2 boinc boinc 187295764 Mar  2 07:32 ATLAS.root_0
[2026-03-02 08:31:34] -rw-r--r-- 2 boinc boinc    597955 Mar  2 07:32 input.tar.gz
[2026-03-02 08:31:34] -rw-r--r-- 2 boinc boinc     15845 Mar  2 07:32 start_atlas.sh
[2026-03-02 08:31:34] -rw------- 1 boinc boinc 151032244 Mar  2 08:30 HITS.pool.root.1
[2026-03-02 08:31:34] -rw------- 1 boinc boinc    808960 Mar  2 08:31 result.tar.gz
08:31:35 (130771): run_atlas exited; CPU time 13058.788404
08:31:35 (130771): called boinc_finish(0)

</stderr_txt>
]]>

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