Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:20:20 (888045): wrapper (7.7.26015): starting
06:20:20 (888045): wrapper: running run_atlas (--nthreads 3)
[2026-03-02 06:20:20] Arguments: --nthreads 3
[2026-03-02 06:20:20] Threads: 3
[2026-03-02 06:20:20] Checking for CVMFS
[2026-03-02 06:20:20] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-02 06:20:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-02 06:20:21] Running cvmfs_config stat atlas.cern.ch
[2026-03-02 06:20:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-02 06:20:21] 2.9.2.0 82037 6526 68036 156796 1 49 20630486 36864000 0 130560 0 2266085 99.979 256800 17567 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-02 06:20:21] CVMFS is ok
[2026-03-02 06:20:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-02 06:20:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-02 06:20:21] Further information can be found at the LHC@home message board.
[2026-03-02 06:20:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-02 06:20:21] Checking for apptainer binary...
[2026-03-02 06:20:21] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-02 06:20:21] Running /usr/bin/apptainer --version
[2026-03-02 06:20:21] apptainer version 1.4.1-1.1
[2026-03-02 06:20:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-02 06:20:21] magicA244b
[2026-03-02 06:20:21] apptainer works
[2026-03-02 06:20:21] Set ATHENA_PROC_NUMBER=3
[2026-03-02 06:20:21] Set ATHENA_CORE_NUMBER=3
[2026-03-02 06:20:21] Starting ATLAS job with PandaID=7035212339
[2026-03-02 06:20:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-02 08:03:51]  *** The last 200 lines of the pilot log: ***
[2026-03-02 08:03:51] 2026-03-02 07:03:07,445 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-02 08:03:51] 2026-03-02 07:03:07,445 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-02 08:03:51] 2026-03-02 07:03:07,445 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-02 08:03:51] 2026-03-02 07:03:07,445 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-02 08:03:51] 2026-03-02 07:03:07,445 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-02 08:03:51] 2026-03-02 07:03:07,445 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-02 08:03:51] 2026-03-02 07:03:07,445 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-02 08:03:51] 2026-03-02 07:03:07,445 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-02 08:03:51] 2026-03-02 07:03:07,445 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-02 08:03:51] 2026-03-02 07:03:07,445 | INFO     | job 7035212339 has completed (purged errors)
[2026-03-02 08:03:51] 2026-03-02 07:03:07,445 | INFO     | overall cleanup function is called
[2026-03-02 08:03:51] 2026-03-02 07:03:08,447 | INFO     | --- collectZombieJob: --- 10, [896525]
[2026-03-02 08:03:51] 2026-03-02 07:03:08,448 | INFO     | zombie collector waiting for pid 896525
[2026-03-02 08:03:51] 2026-03-02 07:03:08,448 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-02 08:03:51] 2026-03-02 07:03:08,448 | INFO     | collected zombie processes
[2026-03-02 08:03:51] 2026-03-02 07:03:08,448 | INFO     | will attempt to kill all subprocesses of pid=896525
[2026-03-02 08:03:51] 2026-03-02 07:03:08,486 | INFO     | process IDs to be killed: [896525] (in reverse order)
[2026-03-02 08:03:51] 2026-03-02 07:03:08,509 | WARNING  | found no corresponding commands to process id(s)
[2026-03-02 08:03:51] 2026-03-02 07:03:08,510 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-02 08:03:51] 2026-03-02 07:03:08,511 | INFO     | did not find any defunct processes belonging to 896525
[2026-03-02 08:03:51] 2026-03-02 07:03:08,512 | INFO     | did not find any defunct processes belonging to 896525
[2026-03-02 08:03:51] 2026-03-02 07:03:08,512 | INFO     | ready for new job
[2026-03-02 08:03:51] 2026-03-02 07:03:08,512 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-02 08:03:51] 2026-03-02 07:03:08,512 | INFO     | **************************************
[2026-03-02 08:03:51] 2026-03-02 07:03:08,512 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-02 08:03:51] 2026-03-02 07:03:08,513 | INFO     | **************************************
[2026-03-02 08:03:51] 2026-03-02 07:03:08,513 | INFO     | 
[2026-03-02 08:03:51] 2026-03-02 07:03:08,513 | INFO     | architecture information:
[2026-03-02 08:03:51] 2026-03-02 07:03:08,513 | INFO     | executing command: cat /etc/os-release
[2026-03-02 08:03:51] 2026-03-02 07:03:08,522 | INFO     | cat /etc/os-release:
[2026-03-02 08:03:51] NAME="CentOS Linux"
[2026-03-02 08:03:51] VERSION="7 (Core)"
[2026-03-02 08:03:51] ID="centos"
[2026-03-02 08:03:51] ID_LIKE="rhel fedora"
[2026-03-02 08:03:51] VERSION_ID="7"
[2026-03-02 08:03:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-02 08:03:51] ANSI_COLOR="0;31"
[2026-03-02 08:03:51] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-02 08:03:51] HOME_URL="https://www.centos.org/"
[2026-03-02 08:03:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-02 08:03:51] 
[2026-03-02 08:03:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-02 08:03:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-02 08:03:51] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-02 08:03:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-02 08:03:51] 
[2026-03-02 08:03:51] 2026-03-02 07:03:08,522 | INFO     | **************************************
[2026-03-02 08:03:51] 2026-03-02 07:03:09,026 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-02 08:03:51] 2026-03-02 07:03:09,039 | INFO     | sufficient remaining disk space (339279347712 B)
[2026-03-02 08:03:51] 2026-03-02 07:03:09,039 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-02 08:03:51] 2026-03-02 07:03:09,039 | INFO     | current server update state: UPDATING_FINAL
[2026-03-02 08:03:51] 2026-03-02 07:03:09,039 | INFO     | update_server=False
[2026-03-02 08:03:51] 2026-03-02 07:03:09,039 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-02 08:03:51] 2026-03-02 07:03:09,039 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-02 08:03:51] 2026-03-02 07:03:09,039 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-02 08:03:51] 2026-03-02 07:03:09,039 | INFO     | found 0 job(s) in 20 queues
[2026-03-02 08:03:51] 2026-03-02 07:03:09,039 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-02 08:03:51] 2026-03-02 07:03:09,039 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-02 08:03:51] 2026-03-02 07:03:09,039 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-02 08:03:51] 2026-03-02 07:03:09,206 | INFO     | all job control threads have been joined
[2026-03-02 08:03:51] 2026-03-02 07:03:09,460 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-02 08:03:51] 2026-03-02 07:03:09,461 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-02 08:03:51] 2026-03-02 07:03:09,461 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-02 08:03:51] 2026-03-02 07:03:09,461 | INFO     | will abort loop
[2026-03-02 08:03:51] 2026-03-02 07:03:10,044 | INFO     | [job] retrieve thread has finished
[2026-03-02 08:03:51] 2026-03-02 07:03:10,045 | INFO     | [job] queue monitor thread has finished
[2026-03-02 08:03:51] 2026-03-02 07:03:10,116 | INFO     | all data control threads have been joined
[2026-03-02 08:03:51] 2026-03-02 07:03:10,160 | INFO     | all payload control threads have been joined
[2026-03-02 08:03:51] 2026-03-02 07:03:10,212 | INFO     | [job] control thread has finished
[2026-03-02 08:03:51] 2026-03-02 07:03:10,369 | INFO     | [payload] failed_post thread has finished
[2026-03-02 08:03:51] 2026-03-02 07:03:10,467 | INFO     | [job] job monitor thread has finished
[2026-03-02 08:03:51] 2026-03-02 07:03:10,863 | INFO     | [payload] validate_post thread has finished
[2026-03-02 08:03:51] 2026-03-02 07:03:10,877 | INFO     | [job] validate thread has finished
[2026-03-02 08:03:51] 2026-03-02 07:03:11,045 | INFO     | [data] copytool_out thread has finished
[2026-03-02 08:03:51] 2026-03-02 07:03:11,046 | INFO     | [job] create_data_payload thread has finished
[2026-03-02 08:03:51] 2026-03-02 07:03:11,122 | INFO     | [data] control thread has finished
[2026-03-02 08:03:51] 2026-03-02 07:03:11,150 | INFO     | [data] copytool_in thread has finished
[2026-03-02 08:03:51] 2026-03-02 07:03:11,165 | INFO     | [payload] control thread has finished
[2026-03-02 08:03:51] 2026-03-02 07:03:11,226 | INFO     | [payload] validate_pre thread has finished
[2026-03-02 08:03:51] 2026-03-02 07:03:11,407 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-02 08:03:51] 2026-03-02 07:03:11,471 | INFO     | [payload] execute_payloads thread has finished
[2026-03-02 08:03:51] 2026-03-02 07:03:15,414 | INFO     | [data] queue_monitor thread has finished
[2026-03-02 08:03:51] 2026-03-02 07:03:19,917 | INFO     | job.realtimelogging is not enabled
[2026-03-02 08:03:51] 2026-03-02 07:03:20,923 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-02 08:03:51] 2026-03-02 07:03:45,513 | INFO     | [monitor] cgroup control has ended
[2026-03-02 08:03:51] 2026-03-02 07:03:46,316 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139868644673344)>', '<ExcThread(monitor, started 139867874907904)>']
[2026-03-02 08:03:51] 2026-03-02 07:03:47,238 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-02 08:03:51] 2026-03-02 07:03:47,238 | INFO     | [monitor] control thread has ended
[2026-03-02 08:03:51] 2026-03-02 07:03:51,334 | INFO     | all workflow threads have been joined
[2026-03-02 08:03:51] 2026-03-02 07:03:51,334 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-02 08:03:51] 2026-03-02 07:03:51,335 | INFO     | traces error code: 0
[2026-03-02 08:03:51] 2026-03-02 07:03:51,335 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-02 08:03:51] 2026-03-02 07:03:51,382 [wrapper] ==== pilot stdout END ====
[2026-03-02 08:03:51] 2026-03-02 07:03:51,385 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-02 08:03:51] 2026-03-02 07:03:51,388 [wrapper] pilotpid: 892089
[2026-03-02 08:03:51] 2026-03-02 07:03:51,391 [wrapper] Pilot exit status: 0
[2026-03-02 08:03:51] 2026-03-02 07:03:51,400 [wrapper] pandaids: 7035212339
[2026-03-02 08:03:51] 2026-03-02 07:03:51,416 [wrapper] cleanup supervisor_pilot  901937 892090
[2026-03-02 08:03:51] 2026-03-02 07:03:51,419 [wrapper] Test setup, not cleaning
[2026-03-02 08:03:51] 2026-03-02 07:03:51,421 [wrapper] apfmon messages muted
[2026-03-02 08:03:51] 2026-03-02 07:03:51,424 [wrapper] ==== wrapper stdout END ====
[2026-03-02 08:03:51] 2026-03-02 07:03:51,427 [wrapper] ==== wrapper stderr END ====
[2026-03-02 08:03:51]  *** Error codes and diagnostics ***
[2026-03-02 08:03:51]     "exeErrorCode": 0,
[2026-03-02 08:03:51]     "exeErrorDiag": "",
[2026-03-02 08:03:51]     "pilotErrorCode": 0,
[2026-03-02 08:03:51]     "pilotErrorDiag": "",
[2026-03-02 08:03:51]  *** Listing of results directory ***
[2026-03-02 08:03:51] total 485388
[2026-03-02 08:03:51] -rwx------ 1 boinc boinc     36322 Mar  1 17:15 runpilot2-wrapper.sh
[2026-03-02 08:03:51] -rw-r--r-- 1 boinc boinc      5111 Mar  1 17:16 queuedata.json
[2026-03-02 08:03:51] -rw-r--r-- 1 boinc boinc    584627 Mar  1 17:16 pilot3.tar.gz
[2026-03-02 08:03:51] -rw-r--r-- 1 boinc boinc       100 Mar  2 06:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-02 08:03:51] -rwxr-xr-x 1 boinc boinc      7986 Mar  2 06:20 run_atlas
[2026-03-02 08:03:51] -rw-r--r-- 1 boinc boinc       105 Mar  2 06:20 job.xml
[2026-03-02 08:03:51] -rw-r--r-- 2 boinc boinc 278980765 Mar  2 06:20 EVNT.48220117._000093.pool.root.1
[2026-03-02 08:03:51] -rw-r--r-- 2 boinc boinc    597963 Mar  2 06:20 input.tar.gz
[2026-03-02 08:03:51] -rw-r--r-- 2 boinc boinc     15845 Mar  2 06:20 start_atlas.sh
[2026-03-02 08:03:51] drwxrwx--x 2 boinc boinc      4096 Mar  2 06:20 shared
[2026-03-02 08:03:51] -rw-r--r-- 1 boinc boinc         0 Mar  2 06:20 boinc_setup_complete
[2026-03-02 08:03:51] -rw-r--r-- 1 boinc boinc      6199 Mar  2 06:20 init_data.xml
[2026-03-02 08:03:51] -rw-r--r-- 1 boinc boinc         0 Mar  2 06:20 boinc_lockfile
[2026-03-02 08:03:51] -rw-r--r-- 1 boinc boinc      2571 Mar  2 06:20 pandaJob.out
[2026-03-02 08:03:51] -rw------- 1 boinc boinc    998242 Mar  2 06:20 agis_schedconf.cvmfs.json
[2026-03-02 08:03:51] -rw------- 1 boinc boinc   1513015 Mar  2 06:20 agis_ddmendpoints.agis.ALL.json
[2026-03-02 08:03:51] -rw------- 1 boinc boinc       430 Mar  2 06:20 workernode_map.json
[2026-03-02 08:03:51] drwx------ 5 boinc boinc      4096 Mar  2 06:20 pilot3
[2026-03-02 08:03:51] -rw------- 1 boinc boinc 211825563 Mar  2 08:02 HITS.48838447._002293.pool.root.1
[2026-03-02 08:03:51] -rw-r--r-- 1 boinc boinc       530 Mar  2 08:02 boinc_task_state.xml
[2026-03-02 08:03:51] -rw------- 1 boinc boinc      1014 Mar  2 08:03 memory_monitor_summary.json
[2026-03-02 08:03:51] -rw------- 1 boinc boinc        95 Mar  2 08:03 pilot_heartbeat.json
[2026-03-02 08:03:51] -rw------- 1 boinc boinc    265622 Mar  2 08:03 log.48838447._002293.job.log.tgz.1
[2026-03-02 08:03:51] -rw------- 1 boinc boinc      6315 Mar  2 08:03 heartbeat.json
[2026-03-02 08:03:51] -rw-r--r-- 1 boinc boinc      8192 Mar  2 08:03 boinc_mmap_file
[2026-03-02 08:03:51] -rw-r--r-- 1 boinc boinc        27 Mar  2 08:03 wrapper_checkpoint.txt
[2026-03-02 08:03:51] -rw------- 1 boinc boinc      4810 Mar  2 08:03 pilotlog.txt
[2026-03-02 08:03:51] -rw------- 1 boinc boinc    891699 Mar  2 08:03 log.48838447._002293.job.log.1
[2026-03-02 08:03:51] -rw------- 1 boinc boinc       357 Mar  2 08:03 output.list
[2026-03-02 08:03:51] -rw-r--r-- 1 boinc boinc       620 Mar  2 08:03 runtime_log
[2026-03-02 08:03:51] -rw------- 1 boinc boinc   1177600 Mar  2 08:03 result.tar.gz
[2026-03-02 08:03:51] -rw------- 1 boinc boinc       661 Mar  2 08:03 vFgKDmDdyG9n9Rq4apOajLDm4fhM0noT9bVooX4SDm358KDm20M7bn.diag
[2026-03-02 08:03:51] -rw-r--r-- 1 boinc boinc      8916 Mar  2 08:03 runtime_log.err
[2026-03-02 08:03:51] -rw-r--r-- 1 boinc boinc     11960 Mar  2 08:03 stderr.txt
[2026-03-02 08:03:51] HITS file was successfully produced:
[2026-03-02 08:03:51] -rw------- 1 boinc boinc 211825563 Mar  2 08:02 shared/HITS.pool.root.1
[2026-03-02 08:03:51]  *** Contents of shared directory: ***
[2026-03-02 08:03:51] total 481064
[2026-03-02 08:03:51] -rw-r--r-- 2 boinc boinc 278980765 Mar  2 06:20 ATLAS.root_0
[2026-03-02 08:03:51] -rw-r--r-- 2 boinc boinc    597963 Mar  2 06:20 input.tar.gz
[2026-03-02 08:03:51] -rw-r--r-- 2 boinc boinc     15845 Mar  2 06:20 start_atlas.sh
[2026-03-02 08:03:51] -rw------- 1 boinc boinc 211825563 Mar  2 08:02 HITS.pool.root.1
[2026-03-02 08:03:51] -rw------- 1 boinc boinc   1177600 Mar  2 08:03 result.tar.gz
08:03:52 (888045): run_atlas exited; CPU time 17660.777910
08:03:52 (888045): called boinc_finish(0)

</stderr_txt>
]]>

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