Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:04:14 (902220): wrapper (7.7.26015): starting
08:04:14 (902220): wrapper: running run_atlas (--nthreads 3)
[2026-03-02 08:04:14] Arguments: --nthreads 3
[2026-03-02 08:04:14] Threads: 3
[2026-03-02 08:04:14] Checking for CVMFS
[2026-03-02 08:04:14] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-02 08:04:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-02 08:04:15] Running cvmfs_config stat atlas.cern.ch
[2026-03-02 08:04:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-02 08:04:15] 2.9.2.0 82037 6630 68104 156797 1 50 20637124 36864001 0 130560 0 2306336 99.979 258517 17285 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-02 08:04:15] CVMFS is ok
[2026-03-02 08:04:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-02 08:04:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-02 08:04:15] Further information can be found at the LHC@home message board.
[2026-03-02 08:04:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-02 08:04:15] Checking for apptainer binary...
[2026-03-02 08:04:15] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-02 08:04:15] Running /usr/bin/apptainer --version
[2026-03-02 08:04:15] apptainer version 1.4.1-1.1
[2026-03-02 08:04:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-02 08:04:15] magicA244b
[2026-03-02 08:04:15] apptainer works
[2026-03-02 08:04:15] Set ATHENA_PROC_NUMBER=3
[2026-03-02 08:04:15] Set ATHENA_CORE_NUMBER=3
[2026-03-02 08:04:15] Starting ATLAS job with PandaID=7035458808
[2026-03-02 08:04:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-02 09:46:42]  *** The last 200 lines of the pilot log: ***
[2026-03-02 09:46:42] 2026-03-02 08:45:55,320 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-02 09:46:42] 2026-03-02 08:45:55,320 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-02 09:46:42] 2026-03-02 08:45:55,320 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-02 09:46:42] 2026-03-02 08:45:55,320 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-02 09:46:42] 2026-03-02 08:45:55,320 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-02 09:46:42] 2026-03-02 08:45:55,320 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-02 09:46:42] 2026-03-02 08:45:55,320 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-02 09:46:42] 2026-03-02 08:45:55,320 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-02 09:46:42] 2026-03-02 08:45:55,321 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-02 09:46:42] 2026-03-02 08:45:55,321 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-02 09:46:42] 2026-03-02 08:45:55,321 | INFO     | job 7035458808 has completed (purged errors)
[2026-03-02 09:46:42] 2026-03-02 08:45:55,321 | INFO     | overall cleanup function is called
[2026-03-02 09:46:42] 2026-03-02 08:45:56,326 | INFO     | --- collectZombieJob: --- 10, [910690]
[2026-03-02 09:46:42] 2026-03-02 08:45:56,326 | INFO     | zombie collector waiting for pid 910690
[2026-03-02 09:46:42] 2026-03-02 08:45:56,327 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-02 09:46:42] 2026-03-02 08:45:56,327 | INFO     | collected zombie processes
[2026-03-02 09:46:42] 2026-03-02 08:45:56,327 | INFO     | will attempt to kill all subprocesses of pid=910690
[2026-03-02 09:46:42] 2026-03-02 08:45:56,363 | INFO     | process IDs to be killed: [910690] (in reverse order)
[2026-03-02 09:46:42] 2026-03-02 08:45:56,388 | WARNING  | found no corresponding commands to process id(s)
[2026-03-02 09:46:42] 2026-03-02 08:45:56,388 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-02 09:46:42] 2026-03-02 08:45:56,389 | INFO     | did not find any defunct processes belonging to 910690
[2026-03-02 09:46:42] 2026-03-02 08:45:56,390 | INFO     | did not find any defunct processes belonging to 910690
[2026-03-02 09:46:42] 2026-03-02 08:45:56,390 | INFO     | ready for new job
[2026-03-02 09:46:42] 2026-03-02 08:45:56,390 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-02 09:46:42] 2026-03-02 08:45:56,391 | INFO     | **************************************
[2026-03-02 09:46:42] 2026-03-02 08:45:56,391 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-02 09:46:42] 2026-03-02 08:45:56,391 | INFO     | **************************************
[2026-03-02 09:46:42] 2026-03-02 08:45:56,391 | INFO     | 
[2026-03-02 09:46:42] 2026-03-02 08:45:56,391 | INFO     | architecture information:
[2026-03-02 09:46:42] 2026-03-02 08:45:56,391 | INFO     | executing command: cat /etc/os-release
[2026-03-02 09:46:42] 2026-03-02 08:45:56,402 | INFO     | cat /etc/os-release:
[2026-03-02 09:46:42] NAME="CentOS Linux"
[2026-03-02 09:46:42] VERSION="7 (Core)"
[2026-03-02 09:46:42] ID="centos"
[2026-03-02 09:46:42] ID_LIKE="rhel fedora"
[2026-03-02 09:46:42] VERSION_ID="7"
[2026-03-02 09:46:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-02 09:46:42] ANSI_COLOR="0;31"
[2026-03-02 09:46:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-02 09:46:42] HOME_URL="https://www.centos.org/"
[2026-03-02 09:46:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-02 09:46:42] 
[2026-03-02 09:46:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-02 09:46:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-02 09:46:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-02 09:46:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-02 09:46:42] 
[2026-03-02 09:46:42] 2026-03-02 08:45:56,402 | INFO     | **************************************
[2026-03-02 09:46:42] 2026-03-02 08:45:56,905 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-02 09:46:42] 2026-03-02 08:45:56,923 | INFO     | sufficient remaining disk space (339241598976 B)
[2026-03-02 09:46:42] 2026-03-02 08:45:56,923 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-02 09:46:42] 2026-03-02 08:45:56,923 | INFO     | current server update state: UPDATING_FINAL
[2026-03-02 09:46:42] 2026-03-02 08:45:56,923 | INFO     | update_server=False
[2026-03-02 09:46:42] 2026-03-02 08:45:56,923 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-02 09:46:42] 2026-03-02 08:45:56,924 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-02 09:46:42] 2026-03-02 08:45:56,924 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-02 09:46:42] 2026-03-02 08:45:57,071 | INFO     | all payload control threads have been joined
[2026-03-02 09:46:42] 2026-03-02 08:45:57,702 | INFO     | all data control threads have been joined
[2026-03-02 09:46:42] 2026-03-02 08:45:57,929 | INFO     | [job] retrieve thread has finished
[2026-03-02 09:46:42] 2026-03-02 08:45:57,930 | INFO     | [job] queue monitor thread has finished
[2026-03-02 09:46:42] 2026-03-02 08:45:57,989 | INFO     | all job control threads have been joined
[2026-03-02 09:46:42] 2026-03-02 08:45:58,065 | INFO     | [payload] failed_post thread has finished
[2026-03-02 09:46:42] 2026-03-02 08:45:58,075 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-02 09:46:42] 2026-03-02 08:45:58,076 | INFO     | [payload] control thread has finished
[2026-03-02 09:46:42] 2026-03-02 08:45:58,093 | INFO     | [payload] validate_pre thread has finished
[2026-03-02 09:46:42] 2026-03-02 08:45:58,170 | INFO     | [job] create_data_payload thread has finished
[2026-03-02 09:46:42] 2026-03-02 08:45:58,195 | INFO     | [job] validate thread has finished
[2026-03-02 09:46:42] 2026-03-02 08:45:58,708 | INFO     | [data] control thread has finished
[2026-03-02 09:46:42] 2026-03-02 08:45:58,733 | INFO     | [payload] execute_payloads thread has finished
[2026-03-02 09:46:42] 2026-03-02 08:45:58,926 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-02 09:46:42] 2026-03-02 08:45:58,962 | INFO     | [payload] validate_post thread has finished
[2026-03-02 09:46:42] 2026-03-02 08:45:58,995 | INFO     | [job] control thread has finished
[2026-03-02 09:46:42] 2026-03-02 08:45:59,230 | WARNING  | process 910690 can no longer be monitored (due to stat problems) - aborting
[2026-03-02 09:46:42] 2026-03-02 08:45:59,255 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-02 09:46:42] 2026-03-02 08:45:59,287 | INFO     | number of running child processes to parent process 910690: 1
[2026-03-02 09:46:42] 2026-03-02 08:45:59,287 | INFO     | maximum number of monitored processes: 6
[2026-03-02 09:46:42] 2026-03-02 08:45:59,287 | INFO     | aborting job monitoring since job object (job id=7035458808) has expired
[2026-03-02 09:46:42] 2026-03-02 08:45:59,287 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-02 09:46:42] 2026-03-02 08:45:59,287 | INFO     | will abort loop
[2026-03-02 09:46:42] 2026-03-02 08:45:59,427 | INFO     | [data] copytool_in thread has finished
[2026-03-02 09:46:42] 2026-03-02 08:46:00,081 | INFO     | [data] copytool_out thread has finished
[2026-03-02 09:46:42] 2026-03-02 08:46:00,292 | INFO     | [job] job monitor thread has finished
[2026-03-02 09:46:42] 2026-03-02 08:46:00,931 | INFO     | [data] queue_monitor thread has finished
[2026-03-02 09:46:42] 2026-03-02 08:46:27,996 | INFO     | PID=906260 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-02 09:46:42] 2026-03-02 08:46:27,997 | INFO     | found 0 job(s) in 20 queues
[2026-03-02 09:46:42] 2026-03-02 08:46:27,997 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-02 09:46:42] 2026-03-02 08:46:27,997 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-02 09:46:42] 2026-03-02 08:46:36,156 | INFO     | [monitor] cgroup control has ended
[2026-03-02 09:46:42] 2026-03-02 08:46:37,400 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140592996554560)>', '<ExcThread(monitor, started 140592491243264)>']
[2026-03-02 09:46:42] 2026-03-02 08:46:38,050 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-02 09:46:42] 2026-03-02 08:46:38,050 | INFO     | [monitor] control thread has ended
[2026-03-02 09:46:42] 2026-03-02 08:46:42,406 | INFO     | all workflow threads have been joined
[2026-03-02 09:46:42] 2026-03-02 08:46:42,407 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-02 09:46:42] 2026-03-02 08:46:42,407 | INFO     | traces error code: 0
[2026-03-02 09:46:42] 2026-03-02 08:46:42,408 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-02 09:46:42] 2026-03-02 08:46:42,455 [wrapper] ==== pilot stdout END ====
[2026-03-02 09:46:42] 2026-03-02 08:46:42,459 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-02 09:46:42] 2026-03-02 08:46:42,462 [wrapper] pilotpid: 906260
[2026-03-02 09:46:42] 2026-03-02 08:46:42,464 [wrapper] Pilot exit status: 0
[2026-03-02 09:46:42] 2026-03-02 08:46:42,472 [wrapper] pandaids: 7035458808
[2026-03-02 09:46:42] 2026-03-02 08:46:42,488 [wrapper] cleanup supervisor_pilot  917052 906261
[2026-03-02 09:46:42] 2026-03-02 08:46:42,491 [wrapper] Test setup, not cleaning
[2026-03-02 09:46:42] 2026-03-02 08:46:42,494 [wrapper] apfmon messages muted
[2026-03-02 09:46:42] 2026-03-02 08:46:42,496 [wrapper] ==== wrapper stdout END ====
[2026-03-02 09:46:42] 2026-03-02 08:46:42,499 [wrapper] ==== wrapper stderr END ====
[2026-03-02 09:46:42]  *** Error codes and diagnostics ***
[2026-03-02 09:46:42]     "exeErrorCode": 0,
[2026-03-02 09:46:42]     "exeErrorDiag": "",
[2026-03-02 09:46:42]     "pilotErrorCode": 0,
[2026-03-02 09:46:42]     "pilotErrorDiag": "",
[2026-03-02 09:46:42]  *** Listing of results directory ***
[2026-03-02 09:46:42] total 475516
[2026-03-02 09:46:42] -rw-r--r-- 1 boinc boinc    584627 Mar  1 19:35 pilot3.tar.gz
[2026-03-02 09:46:42] -rwx------ 1 boinc boinc     36322 Mar  1 19:36 runpilot2-wrapper.sh
[2026-03-02 09:46:42] -rw-r--r-- 1 boinc boinc      5111 Mar  1 19:36 queuedata.json
[2026-03-02 09:46:42] -rw-r--r-- 1 boinc boinc       100 Mar  2 08:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-02 09:46:42] -rwxr-xr-x 1 boinc boinc      7986 Mar  2 08:04 run_atlas
[2026-03-02 09:46:42] -rw-r--r-- 1 boinc boinc       105 Mar  2 08:04 job.xml
[2026-03-02 09:46:42] -rw-r--r-- 2 boinc boinc 273762630 Mar  2 08:04 EVNT.48220133._000211.pool.root.1
[2026-03-02 09:46:42] drwxrwx--x 2 boinc boinc      4096 Mar  2 08:04 shared
[2026-03-02 09:46:42] -rw-r--r-- 2 boinc boinc    597960 Mar  2 08:04 input.tar.gz
[2026-03-02 09:46:42] -rw-r--r-- 2 boinc boinc     15845 Mar  2 08:04 start_atlas.sh
[2026-03-02 09:46:42] -rw-r--r-- 1 boinc boinc         0 Mar  2 08:04 boinc_setup_complete
[2026-03-02 09:46:42] -rw-r--r-- 1 boinc boinc      6199 Mar  2 08:04 init_data.xml
[2026-03-02 09:46:42] -rw-r--r-- 1 boinc boinc         0 Mar  2 08:04 boinc_lockfile
[2026-03-02 09:46:42] -rw-r--r-- 1 boinc boinc      2562 Mar  2 08:04 pandaJob.out
[2026-03-02 09:46:42] -rw------- 1 boinc boinc    998242 Mar  2 08:04 agis_schedconf.cvmfs.json
[2026-03-02 09:46:42] -rw------- 1 boinc boinc   1513015 Mar  2 08:04 agis_ddmendpoints.agis.ALL.json
[2026-03-02 09:46:42] -rw------- 1 boinc boinc       430 Mar  2 08:04 workernode_map.json
[2026-03-02 09:46:42] drwx------ 5 boinc boinc      4096 Mar  2 08:04 pilot3
[2026-03-02 09:46:42] -rw------- 1 boinc boinc 206944976 Mar  2 09:45 HITS.48838462._004883.pool.root.1
[2026-03-02 09:46:42] -rw-r--r-- 1 boinc boinc       529 Mar  2 09:45 boinc_task_state.xml
[2026-03-02 09:46:42] -rw------- 1 boinc boinc      1014 Mar  2 09:45 memory_monitor_summary.json
[2026-03-02 09:46:42] -rw------- 1 boinc boinc        95 Mar  2 09:45 pilot_heartbeat.json
[2026-03-02 09:46:42] -rw------- 1 boinc boinc    268218 Mar  2 09:45 log.48838462._004883.job.log.tgz.1
[2026-03-02 09:46:42] -rw------- 1 boinc boinc      6312 Mar  2 09:45 heartbeat.json
[2026-03-02 09:46:42] -rw------- 1 boinc boinc      5269 Mar  2 09:46 pilotlog.txt
[2026-03-02 09:46:42] -rw-r--r-- 1 boinc boinc        27 Mar  2 09:46 wrapper_checkpoint.txt
[2026-03-02 09:46:42] -rw------- 1 boinc boinc    883513 Mar  2 09:46 log.48838462._004883.job.log.1
[2026-03-02 09:46:42] -rw------- 1 boinc boinc       357 Mar  2 09:46 output.list
[2026-03-02 09:46:42] -rw-r--r-- 1 boinc boinc       620 Mar  2 09:46 runtime_log
[2026-03-02 09:46:42] -rw------- 1 boinc boinc   1167360 Mar  2 09:46 result.tar.gz
[2026-03-02 09:46:42] -rw------- 1 boinc boinc       661 Mar  2 09:46 yVkMDmGp0G9n9Rq4apOajLDm4fhM0noT9bVooX4SDmPO9KDmYioKGm.diag
[2026-03-02 09:46:42] -rw-r--r-- 1 boinc boinc      8916 Mar  2 09:46 runtime_log.err
[2026-03-02 09:46:42] -rw-r--r-- 1 boinc boinc     12450 Mar  2 09:46 stderr.txt
[2026-03-02 09:46:42] -rw-r--r-- 1 boinc boinc      8192 Mar  2 09:46 boinc_mmap_file
[2026-03-02 09:46:42] HITS file was successfully produced:
[2026-03-02 09:46:42] -rw------- 1 boinc boinc 206944976 Mar  2 09:45 shared/HITS.pool.root.1
[2026-03-02 09:46:42]  *** Contents of shared directory: ***
[2026-03-02 09:46:42] total 471192
[2026-03-02 09:46:42] -rw-r--r-- 2 boinc boinc 273762630 Mar  2 08:04 ATLAS.root_0
[2026-03-02 09:46:42] -rw-r--r-- 2 boinc boinc    597960 Mar  2 08:04 input.tar.gz
[2026-03-02 09:46:42] -rw-r--r-- 2 boinc boinc     15845 Mar  2 08:04 start_atlas.sh
[2026-03-02 09:46:42] -rw------- 1 boinc boinc 206944976 Mar  2 09:45 HITS.pool.root.1
[2026-03-02 09:46:42] -rw------- 1 boinc boinc   1167360 Mar  2 09:46 result.tar.gz
09:46:44 (902220): run_atlas exited; CPU time 17452.040708
09:46:44 (902220): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN