Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:45:41 (19026): wrapper (7.7.26015): starting
12:45:41 (19026): wrapper: running run_atlas (--nthreads 8)
[2026-03-02 12:45:41] Arguments: --nthreads 8
[2026-03-02 12:45:41] Threads: 8
[2026-03-02 12:45:41] Checking for CVMFS
[2026-03-02 12:45:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-02 12:45:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-02 12:45:42] Running cvmfs_config stat atlas.cern.ch
[2026-03-02 12:45:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-02 12:45:43] 2.11.2.0 10929 110234 134648 156805 0 53 24647572 25165824 899 130560 158 35358859 99.842 20877441 765 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-02 12:45:43] CVMFS is ok
[2026-03-02 12:45:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-02 12:45:44] Checking for apptainer binary...
[2026-03-02 12:45:44] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-02 12:45:44] Running /usr/bin/apptainer --version
[2026-03-02 12:45:44] apptainer version 1.3.2-1.el7
[2026-03-02 12:45:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-02 12:45:51] cg-vwn424.simple-grid.lan
[2026-03-02 12:45:51] apptainer works
[2026-03-02 12:45:51] Set ATHENA_PROC_NUMBER=8
[2026-03-02 12:45:51] Set ATHENA_CORE_NUMBER=8
[2026-03-02 12:45:51] Starting ATLAS job with PandaID=7035122883
[2026-03-02 12:45:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-02 16:20:48]  *** The last 200 lines of the pilot log: ***
[2026-03-02 16:20:48] 2026-03-02 15:19:44,444 | INFO     | total number of processed events: 400 (read)
[2026-03-02 16:20:48] 2026-03-02 15:19:44,446 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-7035122883/memory_monitor_summary.json (trf name=prmon)
[2026-03-02 16:20:48] 2026-03-02 15:19:44,447 | INFO     | extracted standard info from prmon json
[2026-03-02 16:20:48] 2026-03-02 15:19:44,447 | INFO     | extracted standard memory fields from prmon json
[2026-03-02 16:20:48] 2026-03-02 15:19:44,447 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-02 16:20:48] 2026-03-02 15:19:44,448 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-02 16:20:48] 2026-03-02 15:19:44,448 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-02 16:20:48] 2026-03-02 15:19:44,452 | INFO     | fitting pss+swap vs Time
[2026-03-02 16:20:48] 2026-03-02 15:19:44,453 | INFO     | sum of square deviations: 2443580700.0
[2026-03-02 16:20:48] 2026-03-02 15:19:44,455 | INFO     | sum of deviations: 83487740523.99998
[2026-03-02 16:20:48] 2026-03-02 15:19:44,455 | INFO     | mean x: 1772458680.0
[2026-03-02 16:20:48] 2026-03-02 15:19:44,455 | INFO     | mean y: 2396594.4371859296
[2026-03-02 16:20:48] 2026-03-02 15:19:44,455 | INFO     | intersect: -60555689482.012634
[2026-03-02 16:20:48] 2026-03-02 15:19:44,455 | INFO     | chi2: 9.136378531222663
[2026-03-02 16:20:48] 2026-03-02 15:19:44,456 | INFO     | sum of square deviations: 2263977332.5
[2026-03-02 16:20:48] 2026-03-02 15:19:44,457 | INFO     | sum of deviations: 94438758813.99997
[2026-03-02 16:20:48] 2026-03-02 15:19:44,458 | INFO     | mean x: 1772458527.5
[2026-03-02 16:20:48] 2026-03-02 15:19:44,458 | INFO     | mean y: 2405666.0515463916
[2026-03-02 16:20:48] 2026-03-02 15:19:44,458 | INFO     | intersect: -73933309583.16022
[2026-03-02 16:20:48] 2026-03-02 15:19:44,458 | INFO     | chi2: 8.46600527634695
[2026-03-02 16:20:48] 2026-03-02 15:19:44,458 | INFO     | current chi2=8.46600527634695 (change=7.337406748032378 %)
[2026-03-02 16:20:48] 2026-03-02 15:19:44,459 | INFO     | right removable region: 193
[2026-03-02 16:20:48] 2026-03-02 15:19:44,459 | INFO     | sum of square deviations: 2263977332.5
[2026-03-02 16:20:48] 2026-03-02 15:19:44,465 | INFO     | sum of deviations: 14835753391.999994
[2026-03-02 16:20:48] 2026-03-02 15:19:44,465 | INFO     | mean x: 1772458832.5
[2026-03-02 16:20:48] 2026-03-02 15:19:44,465 | INFO     | mean y: 2454847.5773195876
[2026-03-02 16:20:48] 2026-03-02 15:19:44,465 | INFO     | intersect: -11612397368.016682
[2026-03-02 16:20:48] 2026-03-02 15:19:44,466 | INFO     | chi2: 3.8163802712234456
[2026-03-02 16:20:48] 2026-03-02 15:19:44,466 | INFO     | current chi2=3.8163802712234456 (change=58.22874174727605 %)
[2026-03-02 16:20:48] 2026-03-02 15:19:44,471 | INFO     | sum of square deviations: 2093397390.0
[2026-03-02 16:20:48] 2026-03-02 15:19:44,472 | INFO     | sum of deviations: -36418958588.0
[2026-03-02 16:20:48] 2026-03-02 15:19:44,472 | INFO     | mean x: 1772458985.0
[2026-03-02 16:20:48] 2026-03-02 15:19:44,472 | INFO     | mean y: 2500595.1587301586
[2026-03-02 16:20:48] 2026-03-02 15:19:44,473 | INFO     | intersect: 30838074711.186222
[2026-03-02 16:20:48] 2026-03-02 15:19:44,473 | INFO     | chi2: 1.0791581506835723
[2026-03-02 16:20:48] 2026-03-02 15:19:44,473 | INFO     | current chi2=1.0791581506835723 (change=71.72299210273356 %)
[2026-03-02 16:20:48] 2026-03-02 15:19:44,474 | INFO     | sum of square deviations: 1931608310.0
[2026-03-02 16:20:48] 2026-03-02 15:19:44,475 | INFO     | sum of deviations: -43079058544.5
[2026-03-02 16:20:48] 2026-03-02 15:19:44,475 | INFO     | mean x: 1772459137.5
[2026-03-02 16:20:48] 2026-03-02 15:19:44,475 | INFO     | mean y: 2506775.7010869565
[2026-03-02 16:20:48] 2026-03-02 15:19:44,476 | INFO     | intersect: 39532193284.5029
[2026-03-02 16:20:48] 2026-03-02 15:19:44,476 | INFO     | chi2: 0.9563210979591208
[2026-03-02 16:20:48] 2026-03-02 15:19:44,476 | INFO     | current chi2=0.9563210979591208 (change=11.382673859864074 %)
[2026-03-02 16:20:48] 2026-03-02 15:19:44,476 | INFO     | left removable region: 30
[2026-03-02 16:20:48] 2026-03-02 15:19:44,477 | INFO     | sum of square deviations: 1342841922.0
[2026-03-02 16:20:48] 2026-03-02 15:19:44,478 | INFO     | sum of deviations: -12200756644.0
[2026-03-02 16:20:48] 2026-03-02 15:19:44,478 | INFO     | mean x: 1772459412.0
[2026-03-02 16:20:48] 2026-03-02 15:19:44,478 | INFO     | mean y: 2500077.8036809815
[2026-03-02 16:20:48] 2026-03-02 15:19:44,478 | INFO     | intersect: 16106663637.853256
[2026-03-02 16:20:48] 2026-03-02 15:19:44,479 | INFO     | chi2: 0.10240547657079985
[2026-03-02 16:20:48] 2026-03-02 15:19:44,479 | INFO     | current memory leak: -9.09 B/s (using 163 data points, chi2=0.10)
[2026-03-02 16:20:48] 2026-03-02 15:19:44,479 | INFO     | could have reported an average CPU frequency of 1999 MHz (10 samples)
[2026-03-02 16:20:48] 2026-03-02 15:19:44,480 | INFO     | ..............................
[2026-03-02 16:20:48] 2026-03-02 15:19:44,480 | INFO     | . Timing measurements:
[2026-03-02 16:20:48] 2026-03-02 15:19:44,480 | INFO     | . get job = 0 s
[2026-03-02 16:20:48] 2026-03-02 15:19:44,480 | INFO     | . initial setup = 120 s
[2026-03-02 16:20:48] 2026-03-02 15:19:44,480 | INFO     | . payload setup = 165 s
[2026-03-02 16:20:48] 2026-03-02 15:19:44,480 | INFO     | . stage-in = 0 s
[2026-03-02 16:20:48] 2026-03-02 15:19:44,480 | INFO     | . payload execution = 12266 s
[2026-03-02 16:20:48] 2026-03-02 15:19:44,481 | INFO     | . stage-out = 3 s
[2026-03-02 16:20:48] 2026-03-02 15:19:44,481 | INFO     | . log creation = 1 s
[2026-03-02 16:20:48] 2026-03-02 15:19:44,481 | INFO     | ..............................
[2026-03-02 16:20:48] 2026-03-02 15:19:44,969 | INFO     | 
[2026-03-02 16:20:48] 2026-03-02 15:19:44,970 | INFO     | job summary report
[2026-03-02 16:20:48] 2026-03-02 15:19:44,970 | INFO     | --------------------------------------------------
[2026-03-02 16:20:48] 2026-03-02 15:19:44,970 | INFO     | PanDA job id: 7035122883
[2026-03-02 16:20:48] 2026-03-02 15:19:44,970 | INFO     | task id: 48700890
[2026-03-02 16:20:48] 2026-03-02 15:19:44,970 | INFO     | errors: (none)
[2026-03-02 16:20:48] 2026-03-02 15:19:44,970 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-02 16:20:48] 2026-03-02 15:19:44,970 | INFO     | pilot state: finished 
[2026-03-02 16:20:48] 2026-03-02 15:19:44,970 | INFO     | transexitcode: 0
[2026-03-02 16:20:48] 2026-03-02 15:19:44,970 | INFO     | exeerrorcode: 0
[2026-03-02 16:20:48] 2026-03-02 15:19:44,971 | INFO     | exeerrordiag: 
[2026-03-02 16:20:48] 2026-03-02 15:19:44,971 | INFO     | exitcode: 0
[2026-03-02 16:20:48] 2026-03-02 15:19:44,971 | INFO     | exitmsg: OK
[2026-03-02 16:20:48] 2026-03-02 15:19:44,971 | INFO     | cpuconsumptiontime: 45329 s
[2026-03-02 16:20:48] 2026-03-02 15:19:44,971 | INFO     | nevents: 400
[2026-03-02 16:20:48] 2026-03-02 15:19:44,971 | INFO     | neventsw: 0
[2026-03-02 16:20:48] 2026-03-02 15:19:44,971 | INFO     | pid: 27708
[2026-03-02 16:20:48] 2026-03-02 15:19:44,971 | INFO     | pgrp: 27708
[2026-03-02 16:20:48] 2026-03-02 15:19:44,971 | INFO     | corecount: 8
[2026-03-02 16:20:48] 2026-03-02 15:19:44,971 | INFO     | event service: False
[2026-03-02 16:20:48] 2026-03-02 15:19:44,971 | INFO     | sizes: {0: 2281711, 1: 2282168, 2: 2282256, 12435: 2311998, 12436: 2311997, 12440: 2321051, 12442: 2321235, 12444: 2321429}
[2026-03-02 16:20:48] 2026-03-02 15:19:44,972 | INFO     | --------------------------------------------------
[2026-03-02 16:20:48] 2026-03-02 15:19:44,972 | INFO     | 
[2026-03-02 16:20:48] 2026-03-02 15:19:44,972 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2026-03-02 16:20:48] 2026-03-02 15:19:45,014 | INFO     | time since job start (12448s) is within the limit (349056.0s)
[2026-03-02 16:20:48] 2026-03-02 15:19:45,510 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-02 16:20:48] 2026-03-02 15:19:45,510 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-02 16:20:48] 2026-03-02 15:19:45,511 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-02 16:20:48] 2026-03-02 15:19:45,511 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-02 16:20:48] 2026-03-02 15:19:45,511 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-02 16:20:48] 2026-03-02 15:19:45,511 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-02 16:20:48] 2026-03-02 15:19:45,511 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-02 16:20:48] 2026-03-02 15:19:45,511 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-02 16:20:48] 2026-03-02 15:19:45,511 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-02 16:20:48] 2026-03-02 15:19:45,512 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-02 16:20:48] 2026-03-02 15:19:45,512 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-02 16:20:48] 2026-03-02 15:19:45,512 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-02 16:20:48] 2026-03-02 15:19:45,512 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-02 16:20:48] 2026-03-02 15:19:45,512 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-02 16:20:48] 2026-03-02 15:19:45,512 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-02 16:20:48] 2026-03-02 15:19:45,512 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-02 16:20:48] 2026-03-02 15:19:45,512 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-02 16:20:48] 2026-03-02 15:19:45,513 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-02 16:20:48] 2026-03-02 15:19:45,513 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-02 16:20:48] 2026-03-02 15:19:45,513 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-02 16:20:48] 2026-03-02 15:19:45,513 | INFO     | job 7035122883 has completed (purged errors)
[2026-03-02 16:20:48] 2026-03-02 15:19:45,513 | INFO     | overall cleanup function is called
[2026-03-02 16:20:48] 2026-03-02 15:19:46,521 | INFO     | --- collectZombieJob: --- 10, [27708]
[2026-03-02 16:20:48] 2026-03-02 15:19:46,522 | INFO     | zombie collector waiting for pid 27708
[2026-03-02 16:20:48] 2026-03-02 15:19:46,522 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-02 16:20:48] 2026-03-02 15:19:46,522 | INFO     | collected zombie processes
[2026-03-02 16:20:48] 2026-03-02 15:19:46,522 | INFO     | will attempt to kill all subprocesses of pid=27708
[2026-03-02 16:20:48] 2026-03-02 15:19:46,606 | INFO     | process IDs to be killed: [27708] (in reverse order)
[2026-03-02 16:20:48] 2026-03-02 15:19:47,378 | WARNING  | found no corresponding commands to process id(s)
[2026-03-02 16:20:48] 2026-03-02 15:19:47,378 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-02 16:20:48] 2026-03-02 15:19:47,380 | INFO     | did not find any defunct processes belonging to 27708
[2026-03-02 16:20:48] 2026-03-02 15:19:47,382 | INFO     | did not find any defunct processes belonging to 27708
[2026-03-02 16:20:48] 2026-03-02 15:19:47,383 | INFO     | ready for new job
[2026-03-02 16:20:48] 2026-03-02 15:19:47,383 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-02 16:20:48] 2026-03-02 15:19:47,385 | INFO     | **************************************
[2026-03-02 16:20:48] 2026-03-02 15:19:47,385 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-02 16:20:48] 2026-03-02 15:19:47,385 | INFO     | **************************************
[2026-03-02 16:20:48] 2026-03-02 15:19:47,385 | INFO     | 
[2026-03-02 16:20:48] 2026-03-02 15:19:47,386 | INFO     | pilot is running in a VM
[2026-03-02 16:20:48] 2026-03-02 15:19:47,386 | INFO     | architecture information:
[2026-03-02 16:20:48] 2026-03-02 15:19:47,386 | INFO     | executing command: cat /etc/os-release
[2026-03-02 16:20:48] 2026-03-02 15:19:47,678 | INFO     | cat /etc/os-release:
[2026-03-02 16:20:48] NAME="CentOS Linux"
[2026-03-02 16:20:48] VERSION="7 (Core)"
[2026-03-02 16:20:48] ID="centos"
[2026-03-02 16:20:48] ID_LIKE="rhel fedora"
[2026-03-02 16:20:48] VERSION_ID="7"
[2026-03-02 16:20:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-02 16:20:48] ANSI_COLOR="0;31"
[2026-03-02 16:20:48] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-02 16:20:48] HOME_URL="https://www.centos.org/"
[2026-03-02 16:20:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-02 16:20:48] 
[2026-03-02 16:20:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-02 16:20:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-02 16:20:48] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-02 16:20:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-02 16:20:48] 
[2026-03-02 16:20:48] 2026-03-02 15:19:47,678 | INFO     | **************************************
[2026-03-02 16:20:48] 2026-03-02 15:19:48,182 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2026-03-02 16:20:48] 2026-03-02 15:19:48,478 | INFO     | sufficient remaining disk space (496580427776 B)
[2026-03-02 16:20:48] 2026-03-02 15:19:48,478 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-02 16:20:48] 2026-03-02 15:19:48,478 | INFO     | current server update state: UPDATING_FINAL
[2026-03-02 16:20:48] 2026-03-02 15:19:48,479 | INFO     | update_server=False
[2026-03-02 16:20:48] 2026-03-02 15:19:48,479 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-02 16:20:48] 2026-03-02 15:19:48,479 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-02 16:20:48] 2026-03-02 15:19:48,480 | INFO     | aborting loop
[2026-03-02 16:20:48] 2026-03-02 15:19:48,483 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-02 16:20:48] 2026-03-02 15:19:48,486 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-02 16:20:48] 2026-03-02 15:19:49,061 | INFO     | all data control threads have been joined
[2026-03-02 16:20:48] 2026-03-02 15:19:49,062 | INFO     | all job control threads have been joined
[2026-03-02 16:20:48] 2026-03-02 15:19:49,485 | INFO     | [job] job monitor thread has finished
[2026-03-02 16:20:48] 2026-03-02 15:19:49,487 | INFO     | [job] retrieve thread has finished
[2026-03-02 16:20:48] 2026-03-02 15:19:49,529 | INFO     | [data] copytool_in thread has finished
[2026-03-02 16:20:48] 2026-03-02 15:19:49,552 | INFO     | [job] create_data_payload thread has finished
[2026-03-02 16:20:48] 2026-03-02 15:19:49,631 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-02 16:20:48] 2026-03-02 15:19:49,724 | INFO     | [payload] validate_post thread has finished
[2026-03-02 16:20:48] 2026-03-02 15:19:49,749 | INFO     | all payload control threads have been joined
[2026-03-02 16:20:48] 2026-03-02 15:19:49,786 | INFO     | [job] validate thread has finished
[2026-03-02 16:20:48] 2026-03-02 15:19:50,027 | INFO     | [payload] failed_post thread has finished
[2026-03-02 16:20:48] 2026-03-02 15:19:50,067 | INFO     | [data] control thread has finished
[2026-03-02 16:20:48] 2026-03-02 15:19:50,068 | INFO     | [job] control thread has finished
[2026-03-02 16:20:48] 2026-03-02 15:19:50,275 | INFO     | [payload] execute_payloads thread has finished
[2026-03-02 16:20:48] 2026-03-02 15:19:50,478 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-02 16:20:48] 2026-03-02 15:19:50,496 | INFO     | [data] copytool_out thread has finished
[2026-03-02 16:20:48] 2026-03-02 15:19:50,637 | INFO     | [job] queue monitor thread has finished
[2026-03-02 16:20:48] 2026-03-02 15:19:50,755 | INFO     | [payload] control thread has finished
[2026-03-02 16:20:48] 2026-03-02 15:19:50,793 | INFO     | [payload] validate_pre thread has finished
[2026-03-02 16:20:48] 2026-03-02 15:19:52,492 | INFO     | [data] queue_monitor thread has finished
[2026-03-02 16:20:48] 2026-03-02 15:20:16,058 [wrapper] supervise_pilot (15 min periods counter: 15)
[2026-03-02 16:20:48] 2026-03-02 15:20:18,128 | INFO     | PID=23180 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-02 16:20:48] 2026-03-02 15:20:18,128 | INFO     | .. there are 2 such processes running
[2026-03-02 16:20:48] 2026-03-02 15:20:18,129 | INFO     | found 0 job(s) in 20 queues
[2026-03-02 16:20:48] 2026-03-02 15:20:18,129 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-02 16:20:48] 2026-03-02 15:20:18,129 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-02 16:20:48] 2026-03-02 15:20:38,076 | INFO     | [monitor] cgroup control has ended
[2026-03-02 16:20:48] 2026-03-02 15:20:38,188 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140495642609472)>', '<ExcThread(monitor, started 140495174997760)>']
[2026-03-02 16:20:48] 2026-03-02 15:20:38,249 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-02 16:20:48] 2026-03-02 15:20:38,249 | INFO     | [monitor] control thread has ended
[2026-03-02 16:20:48] 2026-03-02 15:20:43,214 | INFO     | all workflow threads have been joined
[2026-03-02 16:20:48] 2026-03-02 15:20:43,215 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-02 16:20:48] 2026-03-02 15:20:43,215 | INFO     | traces error code: 0
[2026-03-02 16:20:48] 2026-03-02 15:20:43,215 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-02 16:20:48] 2026-03-02 15:20:43,680 [wrapper] ==== pilot stdout END ====
[2026-03-02 16:20:48] 2026-03-02 15:20:43,788 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-02 16:20:48] 2026-03-02 15:20:43,906 [wrapper] pilotpid: 23180
[2026-03-02 16:20:48] 2026-03-02 15:20:44,007 [wrapper] Pilot exit status: 0
[2026-03-02 16:20:48] 2026-03-02 15:20:44,475 [wrapper] pandaids: 7035122883
[2026-03-02 16:20:48] 2026-03-02 15:20:45,402 [wrapper] cleanup supervisor_pilot  1003 23181
[2026-03-02 16:20:48] 2026-03-02 15:20:45,529 [wrapper] Test setup, not cleaning
[2026-03-02 16:20:48] 2026-03-02 15:20:45,645 [wrapper] apfmon messages muted
[2026-03-02 16:20:48] 2026-03-02 15:20:45,740 [wrapper] ==== wrapper stdout END ====
[2026-03-02 16:20:48] 2026-03-02 15:20:45,862 [wrapper] ==== wrapper stderr END ====
[2026-03-02 16:20:48]  *** Error codes and diagnostics ***
[2026-03-02 16:20:48]     "exeErrorCode": 0,
[2026-03-02 16:20:48]     "exeErrorDiag": "",
[2026-03-02 16:20:48]     "pilotErrorCode": 0,
[2026-03-02 16:20:48]     "pilotErrorDiag": "",
[2026-03-02 16:20:48]  *** Listing of results directory ***
[2026-03-02 16:20:48] total 338284
[2026-03-02 16:20:48] -rw-r--r--. 1 boinc boinc      5111 Mar  1 16:13 queuedata.json
[2026-03-02 16:20:48] -rw-r--r--. 1 boinc boinc    584627 Mar  1 16:13 pilot3.tar.gz
[2026-03-02 16:20:48] -rwx------. 1 boinc boinc     36322 Mar  1 16:13 runpilot2-wrapper.sh
[2026-03-02 16:20:48] -rw-r--r--. 1 boinc boinc       100 Mar  2 12:45 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-02 16:20:48] -rwxr-xr-x. 1 boinc boinc      7986 Mar  2 12:45 run_atlas
[2026-03-02 16:20:48] -rw-r--r--. 1 boinc boinc       105 Mar  2 12:45 job.xml
[2026-03-02 16:20:48] -rw-r--r--. 2 boinc boinc 191033860 Mar  2 12:45 EVNT.48700888._000027.pool.root.1
[2026-03-02 16:20:48] -rw-r--r--. 2 boinc boinc     15845 Mar  2 12:45 start_atlas.sh
[2026-03-02 16:20:48] drwxrwx--x. 2 boinc boinc        68 Mar  2 12:45 shared
[2026-03-02 16:20:48] -rw-r--r--. 2 boinc boinc    597921 Mar  2 12:45 input.tar.gz
[2026-03-02 16:20:48] -rw-r--r--. 1 boinc boinc      6390 Mar  2 12:45 init_data.xml
[2026-03-02 16:20:48] -rw-r--r--. 1 boinc boinc         0 Mar  2 12:45 boinc_lockfile
[2026-03-02 16:20:48] -rw-r--r--. 1 boinc boinc      2509 Mar  2 12:45 pandaJob.out
[2026-03-02 16:20:48] -rw-------. 1 boinc boinc       415 Mar  2 12:52 workernode_map.json
[2026-03-02 16:20:48] -rw-------. 1 boinc boinc    998151 Mar  2 12:52 agis_schedconf.cvmfs.json
[2026-03-02 16:20:48] drwx------. 5 boinc boinc      4096 Mar  2 12:52 pilot3
[2026-03-02 16:20:48] -rw-------. 1 boinc boinc 147085763 Mar  2 16:18 HITS.48700890._000611.pool.root.1
[2026-03-02 16:20:48] -rw-r--r--. 1 boinc boinc       531 Mar  2 16:18 boinc_task_state.xml
[2026-03-02 16:20:48] -rw-------. 1 boinc boinc      1012 Mar  2 16:19 memory_monitor_summary.json
[2026-03-02 16:20:48] -rw-------. 1 boinc boinc        95 Mar  2 16:19 pilot_heartbeat.json
[2026-03-02 16:20:48] -rw-------. 1 boinc boinc   1512931 Mar  2 16:19 agis_ddmendpoints.agis.ALL.json
[2026-03-02 16:20:48] -rw-------. 1 boinc boinc    433624 Mar  2 16:19 log.48700890._000611.job.log.tgz.1
[2026-03-02 16:20:48] -rw-------. 1 boinc boinc      6310 Mar  2 16:19 heartbeat.json
[2026-03-02 16:20:48] -rw-r--r--. 1 boinc boinc      8192 Mar  2 16:20 boinc_mmap_file
[2026-03-02 16:20:48] -rw-r--r--. 1 boinc boinc        28 Mar  2 16:20 wrapper_checkpoint.txt
[2026-03-02 16:20:48] -rw-------. 1 boinc boinc      4880 Mar  2 16:20 pilotlog.txt
[2026-03-02 16:20:48] -rw-------. 1 boinc boinc   1750670 Mar  2 16:20 log.48700890._000611.job.log.1
[2026-03-02 16:20:48] -rw-------. 1 boinc boinc       357 Mar  2 16:20 output.list
[2026-03-02 16:20:48] -rw-r--r--. 1 boinc boinc       620 Mar  2 16:20 runtime_log
[2026-03-02 16:20:48] -rw-------. 1 boinc boinc   2201600 Mar  2 16:20 result.tar.gz
[2026-03-02 16:20:48] -rw-r--r--. 1 boinc boinc      8816 Mar  2 16:20 runtime_log.err
[2026-03-02 16:20:48] -rw-------. 1 boinc boinc       654 Mar  2 16:20 d3qLDmffxG9n9Rq4apOajLDm4fhM0noT9bVooX4SDmps8KDmSFHN9n.diag
[2026-03-02 16:20:48] -rw-r--r--. 1 boinc boinc     20657 Mar  2 16:20 stderr.txt
[2026-03-02 16:20:48] HITS file was successfully produced:
[2026-03-02 16:20:48] -rw-------. 1 boinc boinc 147085763 Mar  2 16:18 shared/HITS.pool.root.1
[2026-03-02 16:20:48]  *** Contents of shared directory: ***
[2026-03-02 16:20:48] total 332952
[2026-03-02 16:20:48] -rw-r--r--. 2 boinc boinc 191033860 Mar  2 12:45 ATLAS.root_0
[2026-03-02 16:20:48] -rw-r--r--. 2 boinc boinc     15845 Mar  2 12:45 start_atlas.sh
[2026-03-02 16:20:48] -rw-r--r--. 2 boinc boinc    597921 Mar  2 12:45 input.tar.gz
[2026-03-02 16:20:48] -rw-------. 1 boinc boinc 147085763 Mar  2 16:18 HITS.pool.root.1
[2026-03-02 16:20:48] -rw-------. 1 boinc boinc   2201600 Mar  2 16:20 result.tar.gz
16:20:50 (19026): run_atlas exited; CPU time 45467.633804
16:20:50 (19026): called boinc_finish(0)

</stderr_txt>
]]>

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