Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
19:55:01 (13258): wrapper (7.7.26015): starting
19:55:01 (13258): wrapper: running run_atlas (--nthreads 8)
[2026-03-01 19:55:01] Arguments: --nthreads 8
[2026-03-01 19:55:01] Threads: 8
[2026-03-01 19:55:01] Checking for CVMFS
[2026-03-01 19:55:01] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-01 19:55:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-01 19:55:01] Running cvmfs_config stat atlas.cern.ch
[2026-03-01 19:55:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-01 19:55:01] 2.11.0.0 4268 202500 93172 156779 1 188 3622325 4096000 3761 130560 2 13312294 99.529 12138956 399 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-03-01 19:55:01] CVMFS is ok
[2026-03-01 19:55:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-01 19:55:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-01 19:55:01] Further information can be found at the LHC@home message board.
[2026-03-01 19:55:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-01 19:55:01] Checking for apptainer binary...
[2026-03-01 19:55:01] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-03-01 19:55:01] apptainer is not installed, using version from CVMFS
[2026-03-01 19:55:01] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-01 19:55:01] WARNING: Environment variable TMPDIR already has value [/tmp/job_11236559/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node064
[2026-03-01 19:55:01] apptainer works
[2026-03-01 19:55:01] Set ATHENA_PROC_NUMBER=8
[2026-03-01 19:55:01] Set ATHENA_CORE_NUMBER=8
[2026-03-01 19:55:01] Starting ATLAS job with PandaID=7035115080
[2026-03-01 19:55:01] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11236559/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-01 20:38:19]  *** The last 200 lines of the pilot log: ***
[2026-03-01 20:38:19]  lfn=log.48700938._002065.job.log.tgz.1
[2026-03-01 20:38:19]  mtime=0
[2026-03-01 20:38:19]  protocol_id=None
[2026-03-01 20:38:19]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-01 20:38:19]  replicas=None
[2026-03-01 20:38:19]  scope=mc23_13p6TeV
[2026-03-01 20:38:19]  status=None
[2026-03-01 20:38:19]  status_code=0
[2026-03-01 20:38:19]  storage_token=
[2026-03-01 20:38:19]  surl=/tmp/job_11236559/atlas/pilot/slots/0/PanDA_Pilot-7035115080/log.48700938._002065.job.log.tgz.1
[2026-03-01 20:38:19]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ae/04/log.48700938._002065.job.log.tgz.1
[2026-03-01 20:38:19]  workdir=None
[2026-03-01 20:38:19] ]
[2026-03-01 20:38:19] 2026-03-01 19:37:19,392 | INFO     | transferring file log.48700938._002065.job.log.tgz.1 from /tmp/job_11236559/atlas/pilot/slots/0/PanDA_Pilot-7035115080/log.48700938._002065.job.log.tgz.1 to /tmp/j
[2026-03-01 20:38:19] 2026-03-01 19:37:19,392 | INFO     | executing command: /usr/bin/env mv /tmp/job_11236559/atlas/pilot/slots/0/PanDA_Pilot-7035115080/log.48700938._002065.job.log.tgz.1 /tmp/job_11236559/atlas/pilot/sl
[2026-03-01 20:38:19] 2026-03-01 19:37:19,401 | INFO     | adding to output.list: log.48700938._002065.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ae/04/log.48700938._002065.job.log.tg
[2026-03-01 20:38:19] 2026-03-01 19:37:19,402 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-01 20:38:19] 2026-03-01 19:37:19,402 | INFO     | summary of transferred files:
[2026-03-01 20:38:19] 2026-03-01 19:37:19,402 | INFO     |  -- lfn=log.48700938._002065.job.log.tgz.1, status_code=0, status=transferred
[2026-03-01 20:38:19] 2026-03-01 19:37:19,402 | INFO     | stage-out finished correctly
[2026-03-01 20:38:19] 2026-03-01 19:37:20,193 | INFO     | time since job start (2532s) is within the limit (349056.0s)
[2026-03-01 20:38:19] 2026-03-01 19:37:22,198 | INFO     | time since job start (2534s) is within the limit (349056.0s)
[2026-03-01 20:38:19] 2026-03-01 19:37:22,519 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-01 20:38:19] 2026-03-01 19:37:23,041 | INFO     | job 7035115080 has state=finished
[2026-03-01 20:38:19] 2026-03-01 19:37:23,041 | INFO     | preparing for final server update for job 7035115080 in state='finished'
[2026-03-01 20:38:19] 2026-03-01 19:37:23,041 | INFO     | reading metadata from: /tmp/job_11236559/atlas/pilot/slots/0/PanDA_Pilot-7035115080/jobReport.json
[2026-03-01 20:38:19] 2026-03-01 19:37:23,043 | INFO     | added worker_node to metadata from /tmp/job_11236559/atlas/pilot/slots/0/workernode_map.json
[2026-03-01 20:38:19] 2026-03-01 19:37:23,043 | INFO     | this job has now completed (state=finished)
[2026-03-01 20:38:19] 2026-03-01 19:37:23,043 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-01 20:38:19] 2026-03-01 19:37:23,043 | INFO     | log transfer has been attempted: DONE
[2026-03-01 20:38:19] 2026-03-01 19:37:23,043 | INFO     | job 7035115080 has finished - writing final server update
[2026-03-01 20:38:19] 2026-03-01 19:37:23,043 | INFO     | total number of processed events: 400 (read)
[2026-03-01 20:38:19] 2026-03-01 19:37:23,062 | INFO     | using path: /tmp/job_11236559/atlas/pilot/slots/0/PanDA_Pilot-7035115080/memory_monitor_summary.json (trf name=prmon)
[2026-03-01 20:38:19] 2026-03-01 19:37:23,062 | INFO     | extracted standard info from prmon json
[2026-03-01 20:38:19] 2026-03-01 19:37:23,062 | INFO     | extracted standard memory fields from prmon json
[2026-03-01 20:38:19] 2026-03-01 19:37:23,062 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-01 20:38:19] 2026-03-01 19:37:23,062 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-01 20:38:19] 2026-03-01 19:37:23,062 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-01 20:38:19] 2026-03-01 19:37:23,063 | INFO     | fitting pss+swap vs Time
[2026-03-01 20:38:19] 2026-03-01 19:37:23,063 | INFO     | sum of square deviations: 13283970.0
[2026-03-01 20:38:19] 2026-03-01 19:37:23,063 | INFO     | sum of deviations: -210158603.0
[2026-03-01 20:38:19] 2026-03-01 19:37:23,063 | INFO     | mean x: 1772392667.0
[2026-03-01 20:38:19] 2026-03-01 19:37:23,063 | INFO     | mean y: 2505249.8571428573
[2026-03-01 20:38:19] 2026-03-01 19:37:23,063 | INFO     | intersect: 28042584146.765537
[2026-03-01 20:38:19] 2026-03-01 19:37:23,063 | INFO     | chi2: 0.0019784448503718005
[2026-03-01 20:38:19] 2026-03-01 19:37:23,063 | INFO     | current memory leak: -15.82 B/s (using 35 data points, chi2=0.00)
[2026-03-01 20:38:19] 2026-03-01 19:37:23,064 | INFO     | could have reported an average CPU frequency of 2864 MHz (5 samples)
[2026-03-01 20:38:19] 2026-03-01 19:37:23,064 | INFO     | ..............................
[2026-03-01 20:38:19] 2026-03-01 19:37:23,064 | INFO     | . Timing measurements:
[2026-03-01 20:38:19] 2026-03-01 19:37:23,064 | INFO     | . get job = 0 s
[2026-03-01 20:38:19] 2026-03-01 19:37:23,064 | INFO     | . initial setup = 2 s
[2026-03-01 20:38:19] 2026-03-01 19:37:23,064 | INFO     | . payload setup = 2 s
[2026-03-01 20:38:19] 2026-03-01 19:37:23,064 | INFO     | . stage-in = 0 s
[2026-03-01 20:38:19] 2026-03-01 19:37:23,064 | INFO     | . payload execution = 2513 s
[2026-03-01 20:38:19] 2026-03-01 19:37:23,064 | INFO     | . stage-out = 0 s
[2026-03-01 20:38:19] 2026-03-01 19:37:23,064 | INFO     | . log creation = 0 s
[2026-03-01 20:38:19] 2026-03-01 19:37:23,064 | INFO     | ..............................
[2026-03-01 20:38:19] 2026-03-01 19:37:23,161 | INFO     | 
[2026-03-01 20:38:19] 2026-03-01 19:37:23,161 | INFO     | job summary report
[2026-03-01 20:38:19] 2026-03-01 19:37:23,161 | INFO     | --------------------------------------------------
[2026-03-01 20:38:19] 2026-03-01 19:37:23,161 | INFO     | PanDA job id: 7035115080
[2026-03-01 20:38:19] 2026-03-01 19:37:23,161 | INFO     | task id: 48700938
[2026-03-01 20:38:19] 2026-03-01 19:37:23,161 | INFO     | errors: (none)
[2026-03-01 20:38:19] 2026-03-01 19:37:23,161 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-01 20:38:19] 2026-03-01 19:37:23,161 | INFO     | pilot state: finished 
[2026-03-01 20:38:19] 2026-03-01 19:37:23,161 | INFO     | transexitcode: 0
[2026-03-01 20:38:19] 2026-03-01 19:37:23,161 | INFO     | exeerrorcode: 0
[2026-03-01 20:38:19] 2026-03-01 19:37:23,161 | INFO     | exeerrordiag: 
[2026-03-01 20:38:19] 2026-03-01 19:37:23,162 | INFO     | exitcode: 0
[2026-03-01 20:38:19] 2026-03-01 19:37:23,162 | INFO     | exitmsg: OK
[2026-03-01 20:38:19] 2026-03-01 19:37:23,162 | INFO     | cpuconsumptiontime: 16853 s
[2026-03-01 20:38:19] 2026-03-01 19:37:23,162 | INFO     | nevents: 400
[2026-03-01 20:38:19] 2026-03-01 19:37:23,162 | INFO     | neventsw: 0
[2026-03-01 20:38:19] 2026-03-01 19:37:23,162 | INFO     | pid: 21679
[2026-03-01 20:38:19] 2026-03-01 19:37:23,162 | INFO     | pgrp: 21679
[2026-03-01 20:38:19] 2026-03-01 19:37:23,162 | INFO     | corecount: 8
[2026-03-01 20:38:19] 2026-03-01 19:37:23,162 | INFO     | event service: False
[2026-03-01 20:38:19] 2026-03-01 19:37:23,162 | INFO     | sizes: {0: 2282318, 11: 2282318, 2519: 2307630, 2520: 2316658, 2523: 2316714, 2524: 2316940}
[2026-03-01 20:38:19] 2026-03-01 19:37:23,162 | INFO     | --------------------------------------------------
[2026-03-01 20:38:19] 2026-03-01 19:37:23,162 | INFO     | 
[2026-03-01 20:38:19] 2026-03-01 19:37:23,162 | INFO     | executing command: ls -lF /tmp/job_11236559/atlas/pilot/slots/0
[2026-03-01 20:38:19] 2026-03-01 19:37:23,172 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-01 20:38:19] 2026-03-01 19:37:23,172 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-01 20:38:19] 2026-03-01 19:37:23,172 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-01 20:38:19] 2026-03-01 19:37:23,173 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-01 20:38:19] 2026-03-01 19:37:23,173 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-01 20:38:19] 2026-03-01 19:37:23,173 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-01 20:38:19] 2026-03-01 19:37:23,173 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-01 20:38:19] 2026-03-01 19:37:23,173 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-01 20:38:19] 2026-03-01 19:37:23,173 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-01 20:38:19] 2026-03-01 19:37:23,173 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-01 20:38:19] 2026-03-01 19:37:23,173 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-01 20:38:19] 2026-03-01 19:37:23,173 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-01 20:38:19] 2026-03-01 19:37:23,173 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-01 20:38:19] 2026-03-01 19:37:23,173 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-01 20:38:19] 2026-03-01 19:37:23,173 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-01 20:38:19] 2026-03-01 19:37:23,173 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-01 20:38:19] 2026-03-01 19:37:23,173 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-01 20:38:19] 2026-03-01 19:37:23,173 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-01 20:38:19] 2026-03-01 19:37:23,173 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-01 20:38:19] 2026-03-01 19:37:23,173 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-01 20:38:19] 2026-03-01 19:37:23,173 | INFO     | job 7035115080 has completed (purged errors)
[2026-03-01 20:38:19] 2026-03-01 19:37:23,173 | INFO     | overall cleanup function is called
[2026-03-01 20:38:19] 2026-03-01 19:37:23,334 | INFO     | PID=17010 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-01 20:38:19] 2026-03-01 19:37:23,334 | INFO     | .. there are 3 such processes running
[2026-03-01 20:38:19] 2026-03-01 19:37:23,515 | WARNING  | process 21679 can no longer be monitored (due to stat problems) - aborting
[2026-03-01 20:38:19] 2026-03-01 19:37:23,593 | INFO     | using path: /tmp/job_11236559/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-01 20:38:19] 2026-03-01 19:37:23,689 | INFO     | number of running child processes to parent process 21679: 1
[2026-03-01 20:38:19] 2026-03-01 19:37:23,689 | INFO     | maximum number of monitored processes: 6
[2026-03-01 20:38:19] 2026-03-01 19:37:23,689 | INFO     | aborting job monitoring since job object (job id=7035115080) has expired
[2026-03-01 20:38:19] 2026-03-01 19:37:24,179 | INFO     | --- collectZombieJob: --- 10, [21679]
[2026-03-01 20:38:19] 2026-03-01 19:37:24,180 | INFO     | zombie collector waiting for pid 21679
[2026-03-01 20:38:19] 2026-03-01 19:37:24,180 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-01 20:38:19] 2026-03-01 19:37:24,180 | INFO     | collected zombie processes
[2026-03-01 20:38:19] 2026-03-01 19:37:24,180 | INFO     | will attempt to kill all subprocesses of pid=21679
[2026-03-01 20:38:19] 2026-03-01 19:37:24,281 | INFO     | process IDs to be killed: [21679] (in reverse order)
[2026-03-01 20:38:19] 2026-03-01 19:37:24,318 | WARNING  | found no corresponding commands to process id(s)
[2026-03-01 20:38:19] 2026-03-01 19:37:24,318 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-01 20:38:19] 2026-03-01 19:37:24,321 | INFO     | did not find any defunct processes belonging to 21679
[2026-03-01 20:38:19] 2026-03-01 19:37:24,324 | INFO     | did not find any defunct processes belonging to 21679
[2026-03-01 20:38:19] 2026-03-01 19:37:24,325 | INFO     | ready for new job
[2026-03-01 20:38:19] 2026-03-01 19:37:24,325 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-01 20:38:19] 2026-03-01 19:37:24,325 | INFO     | **************************************
[2026-03-01 20:38:19] 2026-03-01 19:37:24,325 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-01 20:38:19] 2026-03-01 19:37:24,325 | INFO     | **************************************
[2026-03-01 20:38:19] 2026-03-01 19:37:24,326 | INFO     | 
[2026-03-01 20:38:19] 2026-03-01 19:37:24,339 | INFO     | architecture information:
[2026-03-01 20:38:19] 2026-03-01 19:37:24,339 | INFO     | executing command: cat /etc/os-release
[2026-03-01 20:38:19] 2026-03-01 19:37:24,347 | INFO     | cat /etc/os-release:
[2026-03-01 20:38:19] NAME="CentOS Linux"
[2026-03-01 20:38:19] VERSION="7 (Core)"
[2026-03-01 20:38:19] ID="centos"
[2026-03-01 20:38:19] ID_LIKE="rhel fedora"
[2026-03-01 20:38:19] VERSION_ID="7"
[2026-03-01 20:38:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-01 20:38:19] ANSI_COLOR="0;31"
[2026-03-01 20:38:19] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-01 20:38:19] HOME_URL="https://www.centos.org/"
[2026-03-01 20:38:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-01 20:38:19] 
[2026-03-01 20:38:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-01 20:38:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-01 20:38:19] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-01 20:38:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-01 20:38:19] 
[2026-03-01 20:38:19] 2026-03-01 19:37:24,347 | INFO     | **************************************
[2026-03-01 20:38:19] 2026-03-01 19:37:24,850 | INFO     | executing command: df -mP /tmp/job_11236559/atlas/pilot/slots/0
[2026-03-01 20:38:19] 2026-03-01 19:37:24,857 | INFO     | sufficient remaining disk space (224947863552 B)
[2026-03-01 20:38:19] 2026-03-01 19:37:24,857 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-01 20:38:19] 2026-03-01 19:37:24,857 | INFO     | current server update state: UPDATING_FINAL
[2026-03-01 20:38:19] 2026-03-01 19:37:24,857 | INFO     | update_server=False
[2026-03-01 20:38:19] 2026-03-01 19:37:24,857 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-01 20:38:19] 2026-03-01 19:37:24,857 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-01 20:38:19] 2026-03-01 19:37:24,857 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-01 20:38:19] 2026-03-01 19:37:24,858 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-01 20:38:19] 2026-03-01 19:37:24,858 | INFO     | aborting loop
[2026-03-01 20:38:19] 2026-03-01 19:37:24,964 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-01 20:38:19] 2026-03-01 19:37:25,363 | INFO     | all job control threads have been joined
[2026-03-01 20:38:19] 2026-03-01 19:37:25,859 | INFO     | all payload control threads have been joined
[2026-03-01 20:38:19] 2026-03-01 19:37:25,859 | INFO     | [job] job monitor thread has finished
[2026-03-01 20:38:19] 2026-03-01 19:37:25,862 | INFO     | [job] retrieve thread has finished
[2026-03-01 20:38:19] 2026-03-01 19:37:25,863 | INFO     | [job] queue monitor thread has finished
[2026-03-01 20:38:19] 2026-03-01 19:37:25,960 | INFO     | all data control threads have been joined
[2026-03-01 20:38:19] 2026-03-01 19:37:25,977 | INFO     | [payload] execute_payloads thread has finished
[2026-03-01 20:38:19] 2026-03-01 19:37:26,071 | INFO     | [payload] validate_pre thread has finished
[2026-03-01 20:38:19] 2026-03-01 19:37:26,216 | INFO     | [data] copytool_in thread has finished
[2026-03-01 20:38:19] 2026-03-01 19:37:26,368 | INFO     | [job] control thread has finished
[2026-03-01 20:38:19] 2026-03-01 19:37:26,430 | INFO     | [payload] validate_post thread has finished
[2026-03-01 20:38:19] 2026-03-01 19:37:26,864 | INFO     | [payload] control thread has finished
[2026-03-01 20:38:19] 2026-03-01 19:37:26,883 | INFO     | [payload] failed_post thread has finished
[2026-03-01 20:38:19] 2026-03-01 19:37:26,965 | INFO     | [data] copytool_out thread has finished
[2026-03-01 20:38:19] 2026-03-01 19:37:26,966 | INFO     | [data] control thread has finished
[2026-03-01 20:38:19] 2026-03-01 19:37:27,345 | INFO     | [job] validate thread has finished
[2026-03-01 20:38:19] 2026-03-01 19:37:27,359 | INFO     | [job] create_data_payload thread has finished
[2026-03-01 20:38:19] 2026-03-01 19:37:28,863 | INFO     | [data] queue_monitor thread has finished
[2026-03-01 20:38:19] 2026-03-01 19:37:35,151 | INFO     | job.realtimelogging is not enabled
[2026-03-01 20:38:19] 2026-03-01 19:37:36,156 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-01 20:38:19] 2026-03-01 19:37:55,522 | INFO     | PID=17010 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-01 20:38:19] 2026-03-01 19:37:55,522 | INFO     | .. there are 3 such processes running
[2026-03-01 20:38:19] 2026-03-01 19:37:55,522 | INFO     | found 0 job(s) in 20 queues
[2026-03-01 20:38:19] 2026-03-01 19:37:55,522 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-01 20:38:19] 2026-03-01 19:37:55,522 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-01 20:38:19] 2026-03-01 19:38:12,062 | INFO     | [monitor] cgroup control has ended
[2026-03-01 20:38:19] 2026-03-01 19:38:13,892 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456063190784)>']
[2026-03-01 20:38:19] 2026-03-01 19:38:14,618 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-01 20:38:19] 2026-03-01 19:38:14,618 | INFO     | [monitor] control thread has ended
[2026-03-01 20:38:19] 2026-03-01 19:38:18,917 | INFO     | all workflow threads have been joined
[2026-03-01 20:38:19] 2026-03-01 19:38:18,918 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-01 20:38:19] 2026-03-01 19:38:18,918 | INFO     | traces error code: 0
[2026-03-01 20:38:19] 2026-03-01 19:38:18,918 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-01 20:38:19] 2026-03-01 19:38:18,974 [wrapper] ==== pilot stdout END ====
[2026-03-01 20:38:19] 2026-03-01 19:38:18,976 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-01 20:38:19] 2026-03-01 19:38:18,977 [wrapper] pilotpid: 17010
[2026-03-01 20:38:19] 2026-03-01 19:38:18,978 [wrapper] Pilot exit status: 0
[2026-03-01 20:38:19] 2026-03-01 19:38:18,982 [wrapper] pandaids: 7035115080
[2026-03-01 20:38:19] 2026-03-01 19:38:19,006 [wrapper] cleanup supervisor_pilot 15823 17011
[2026-03-01 20:38:19] 2026-03-01 19:38:19,007 [wrapper] Test setup, not cleaning
[2026-03-01 20:38:19] 2026-03-01 19:38:19,008 [wrapper] apfmon messages muted
[2026-03-01 20:38:19] 2026-03-01 19:38:19,009 [wrapper] ==== wrapper stdout END ====
[2026-03-01 20:38:19] 2026-03-01 19:38:19,010 [wrapper] ==== wrapper stderr END ====
[2026-03-01 20:38:19]  *** Error codes and diagnostics ***
[2026-03-01 20:38:19]     "exeErrorCode": 0,
[2026-03-01 20:38:19]     "exeErrorDiag": "",
[2026-03-01 20:38:19]     "pilotErrorCode": 0,
[2026-03-01 20:38:19]     "pilotErrorDiag": "",
[2026-03-01 20:38:19]  *** Listing of results directory ***
[2026-03-01 20:38:19] total 342528
[2026-03-01 20:38:19] -rw------- 1 mf493845 unix-user    584627 Mar  1 15:22 pilot3.tar.gz
[2026-03-01 20:38:19] -rwx------ 1 mf493845 unix-user     36322 Mar  1 15:22 runpilot2-wrapper.sh
[2026-03-01 20:38:19] -rw------- 1 mf493845 unix-user      5111 Mar  1 15:23 queuedata.json
[2026-03-01 20:38:19] -rw------- 1 mf493845 unix-user       100 Mar  1 19:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-01 20:38:19] -rwxr-xr-x 1 mf493845 unix-user      7986 Mar  1 19:06 run_atlas
[2026-03-01 20:38:19] -rw------- 1 mf493845 unix-user       105 Mar  1 19:06 job.xml
[2026-03-01 20:38:19] -rw-r--r-- 2 mf493845 unix-user     15845 Mar  1 19:55 start_atlas.sh
[2026-03-01 20:38:19] drwxrwx--x 2 mf493845 unix-user       100 Mar  1 19:55 shared
[2026-03-01 20:38:19] -rw-r--r-- 2 mf493845 unix-user    597933 Mar  1 19:55 input.tar.gz
[2026-03-01 20:38:19] -rw------- 1 mf493845 unix-user      6390 Mar  1 19:55 init_data.xml
[2026-03-01 20:38:19] -rw-r--r-- 2 mf493845 unix-user 191364555 Mar  1 19:55 EVNT.48700936._000083.pool.root.1
[2026-03-01 20:38:19] -rw------- 1 mf493845 unix-user         0 Mar  1 19:55 boinc_setup_complete
[2026-03-01 20:38:19] -rw------- 1 mf493845 unix-user      8192 Mar  1 19:55 boinc_mmap_file
[2026-03-01 20:38:19] -rw------- 1 mf493845 unix-user         0 Mar  1 19:55 boinc_lockfile
[2026-03-01 20:38:19] -rw------- 1 mf493845 unix-user      2499 Mar  1 19:55 pandaJob.out
[2026-03-01 20:38:19] -rw------- 1 mf493845 unix-user    998184 Mar  1 19:55 agis_schedconf.cvmfs.json
[2026-03-01 20:38:19] -rw------- 1 mf493845 unix-user   1513015 Mar  1 19:55 agis_ddmendpoints.agis.ALL.json
[2026-03-01 20:38:19] -rw------- 1 mf493845 unix-user       420 Mar  1 19:55 workernode_map.json
[2026-03-01 20:38:19] drwx------ 5 mf493845 unix-user       440 Mar  1 19:55 pilot3
[2026-03-01 20:38:19] -rw------- 1 mf493845 unix-user 154063911 Mar  1 20:36 HITS.48700938._002065.pool.root.1
[2026-03-01 20:38:19] -rw------- 1 mf493845 unix-user      1020 Mar  1 20:37 memory_monitor_summary.json
[2026-03-01 20:38:19] -rw------- 1 mf493845 unix-user    295720 Mar  1 20:37 log.48700938._002065.job.log.tgz.1
[2026-03-01 20:38:19] -rw------- 1 mf493845 unix-user      6313 Mar  1 20:37 heartbeat.json
[2026-03-01 20:38:19] -rw------- 1 mf493845 unix-user        95 Mar  1 20:37 pilot_heartbeat.json
[2026-03-01 20:38:19] -rw------- 1 mf493845 unix-user      4903 Mar  1 20:38 pilotlog.txt
[2026-03-01 20:38:19] -rw------- 1 mf493845 unix-user    412133 Mar  1 20:38 log.48700938._002065.job.log.1
[2026-03-01 20:38:19] -rw------- 1 mf493845 unix-user       357 Mar  1 20:38 output.list
[2026-03-01 20:38:19] -rw------- 1 mf493845 unix-user       620 Mar  1 20:38 runtime_log
[2026-03-01 20:38:19] -rw------- 1 mf493845 unix-user    727040 Mar  1 20:38 result.tar.gz
[2026-03-01 20:38:19] -rw------- 1 mf493845 unix-user      9219 Mar  1 20:38 runtime_log.err
[2026-03-01 20:38:19] -rw------- 1 mf493845 unix-user       641 Mar  1 20:38 770KDmFswG9n9Rq4apOajLDm4fhM0noT9bVooX4SDmwi8KDmORDdym.diag
[2026-03-01 20:38:19] -rw------- 1 mf493845 unix-user     22223 Mar  1 20:38 stderr.txt
[2026-03-01 20:38:19] HITS file was successfully produced:
[2026-03-01 20:38:19] -rw------- 1 mf493845 unix-user 154063911 Mar  1 20:36 shared/HITS.pool.root.1
[2026-03-01 20:38:19]  *** Contents of shared directory: ***
[2026-03-01 20:38:19] total 338648
[2026-03-01 20:38:19] -rw-r--r-- 2 mf493845 unix-user     15845 Mar  1 19:55 start_atlas.sh
[2026-03-01 20:38:19] -rw-r--r-- 2 mf493845 unix-user    597933 Mar  1 19:55 input.tar.gz
[2026-03-01 20:38:19] -rw-r--r-- 2 mf493845 unix-user 191364555 Mar  1 19:55 ATLAS.root_0
[2026-03-01 20:38:19] -rw------- 1 mf493845 unix-user 154063911 Mar  1 20:36 HITS.pool.root.1
[2026-03-01 20:38:19] -rw------- 1 mf493845 unix-user    727040 Mar  1 20:38 result.tar.gz
20:38:20 (13258): run_atlas exited; CPU time 16886.679413
20:38:20 (13258): called boinc_finish(0)

</stderr_txt>
]]>

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