Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:25:00 (77158): wrapper (7.7.26015): starting
14:25:00 (77158): wrapper: running run_atlas (--nthreads 4)
[2026-03-02 14:25:00] Arguments: --nthreads 4
[2026-03-02 14:25:00] Threads: 4
[2026-03-02 14:25:00] Checking for CVMFS
[2026-03-02 14:25:00] No cvmfs_config command found, will try listing directly
[2026-03-02 14:25:00] CVMFS is ok
[2026-03-02 14:25:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-02 14:25:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-02 14:25:00] Further information can be found at the LHC@home message board.
[2026-03-02 14:25:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-02 14:25:00] Checking for apptainer binary...
[2026-03-02 14:25:00] which: no apptainer in ((null))
[2026-03-02 14:25:00] apptainer is not installed, using version from CVMFS
[2026-03-02 14:25:00] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-02 14:25:00] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot200/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut23.grid.cesnet.cz
[2026-03-02 14:25:00] apptainer works
[2026-03-02 14:25:00] Set ATHENA_PROC_NUMBER=4
[2026-03-02 14:25:00] Set ATHENA_CORE_NUMBER=4
[2026-03-02 14:25:00] Starting ATLAS job with PandaID=7035104933
[2026-03-02 14:25:00] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot200/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-02 15:33:26]  *** The last 200 lines of the pilot log: ***
[2026-03-02 15:33:26]  protocol_id=None
[2026-03-02 15:33:26]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-02 15:33:26]  replicas=None
[2026-03-02 15:33:26]  scope=mc23_13p6TeV
[2026-03-02 15:33:26]  status=None
[2026-03-02 15:33:26]  status_code=0
[2026-03-02 15:33:26]  storage_token=
[2026-03-02 15:33:26]  surl=/var/lib/boinc/var/slot200/slots/0/PanDA_Pilot-7035104933/log.48700906._002672.job.log.tgz.1
[2026-03-02 15:33:26]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/72/43/log.48700906._002672.job.log.tgz.1
[2026-03-02 15:33:26]  workdir=None
[2026-03-02 15:33:26] ]
[2026-03-02 15:33:26] 2026-03-02 14:32:28,984 | INFO     | transferring file log.48700906._002672.job.log.tgz.1 from /var/lib/boinc/var/slot200/slots/0/PanDA_Pilot-7035104933/log.48700906._002672.job.log.tgz.1 to /var/lib/
[2026-03-02 15:33:26] 2026-03-02 14:32:28,984 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot200/slots/0/PanDA_Pilot-7035104933/log.48700906._002672.job.log.tgz.1 /var/lib/boinc/var/slot200/slots/0/
[2026-03-02 15:33:26] 2026-03-02 14:32:29,001 | INFO     | adding to output.list: log.48700906._002672.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/72/43/log.48700906._002672.job.log.tg
[2026-03-02 15:33:26] 2026-03-02 14:32:29,002 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-02 15:33:26] 2026-03-02 14:32:29,002 | INFO     | summary of transferred files:
[2026-03-02 15:33:26] 2026-03-02 14:32:29,002 | INFO     |  -- lfn=log.48700906._002672.job.log.tgz.1, status_code=0, status=transferred
[2026-03-02 15:33:26] 2026-03-02 14:32:29,002 | INFO     | stage-out finished correctly
[2026-03-02 15:33:26] 2026-03-02 14:32:30,002 | INFO     | time since job start (4037s) is within the limit (349056.0s)
[2026-03-02 15:33:26] 2026-03-02 14:32:30,215 | INFO     | monitor loop #294: job 0:7035104933 is in state 'finished'
[2026-03-02 15:33:26] 2026-03-02 14:32:30,216 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-02 15:33:26] 2026-03-02 14:32:32,008 | INFO     | time since job start (4039s) is within the limit (349056.0s)
[2026-03-02 15:33:26] 2026-03-02 14:32:32,396 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-02 15:33:26] 2026-03-02 14:32:32,719 | INFO     | monitor loop #295: job 0:7035104933 is in state 'finished'
[2026-03-02 15:33:26] 2026-03-02 14:32:32,719 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-02 15:33:26] 2026-03-02 14:32:34,013 | INFO     | time since job start (4041s) is within the limit (349056.0s)
[2026-03-02 15:33:26] 2026-03-02 14:32:35,200 | INFO     | job 7035104933 has state=finished
[2026-03-02 15:33:26] 2026-03-02 14:32:35,200 | INFO     | preparing for final server update for job 7035104933 in state='finished'
[2026-03-02 15:33:26] 2026-03-02 14:32:35,221 | INFO     | monitor loop #296: job 0:7035104933 is in state 'finished'
[2026-03-02 15:33:26] 2026-03-02 14:32:35,222 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-02 15:33:26] 2026-03-02 14:32:35,736 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-03-02 15:33:26] 2026-03-02 14:32:35,737 | INFO     | reading metadata from: /var/lib/boinc/var/slot200/slots/0/PanDA_Pilot-7035104933/jobReport.json
[2026-03-02 15:33:26] 2026-03-02 14:32:35,738 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot200/slots/0/workernode_map.json
[2026-03-02 15:33:26] 2026-03-02 14:32:35,738 | INFO     | this job has now completed (state=finished)
[2026-03-02 15:33:26] 2026-03-02 14:32:35,738 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-02 15:33:26] 2026-03-02 14:32:35,739 | INFO     | log transfer has been attempted: DONE
[2026-03-02 15:33:26] 2026-03-02 14:32:35,739 | INFO     | job 7035104933 has finished - writing final server update
[2026-03-02 15:33:26] 2026-03-02 14:32:35,739 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_16499/.job.ad'
[2026-03-02 15:33:26] 2026-03-02 14:32:35,739 | INFO     | total number of processed events: 400 (read)
[2026-03-02 15:33:26] 2026-03-02 14:32:35,756 | INFO     | using path: /var/lib/boinc/var/slot200/slots/0/PanDA_Pilot-7035104933/memory_monitor_summary.json (trf name=prmon)
[2026-03-02 15:33:26] 2026-03-02 14:32:35,757 | INFO     | extracted standard info from prmon json
[2026-03-02 15:33:26] 2026-03-02 14:32:35,757 | INFO     | extracted standard memory fields from prmon json
[2026-03-02 15:33:26] 2026-03-02 14:32:35,757 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-02 15:33:26] 2026-03-02 14:32:35,757 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-02 15:33:26] 2026-03-02 14:32:35,760 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-02 15:33:26] 2026-03-02 14:32:35,761 | INFO     | fitting pss+swap vs Time
[2026-03-02 15:33:26] 2026-03-02 14:32:35,761 | INFO     | sum of square deviations: 63666310.0
[2026-03-02 15:33:26] 2026-03-02 14:32:35,761 | INFO     | sum of deviations: -549011346.0000001
[2026-03-02 15:33:26] 2026-03-02 14:32:35,761 | INFO     | mean x: 1772460008.0
[2026-03-02 15:33:26] 2026-03-02 14:32:35,761 | INFO     | mean y: 2337541.8474576273
[2026-03-02 15:33:26] 2026-03-02 14:32:35,761 | INFO     | intersect: 15286726643.76417
[2026-03-02 15:33:26] 2026-03-02 14:32:35,761 | INFO     | chi2: 0.0001716794872267368
[2026-03-02 15:33:26] 2026-03-02 14:32:35,761 | INFO     | current memory leak: -8.62 B/s (using 59 data points, chi2=0.00)
[2026-03-02 15:33:26] 2026-03-02 14:32:35,762 | INFO     | could have reported an average CPU frequency of 3586 MHz (6 samples)
[2026-03-02 15:33:26] 2026-03-02 14:32:35,762 | INFO     | ..............................
[2026-03-02 15:33:26] 2026-03-02 14:32:35,762 | INFO     | . Timing measurements:
[2026-03-02 15:33:26] 2026-03-02 14:32:35,762 | INFO     | . get job = 0 s
[2026-03-02 15:33:26] 2026-03-02 14:32:35,762 | INFO     | . initial setup = 5 s
[2026-03-02 15:33:26] 2026-03-02 14:32:35,762 | INFO     | . payload setup = 5 s
[2026-03-02 15:33:26] 2026-03-02 14:32:35,762 | INFO     | . stage-in = 0 s
[2026-03-02 15:33:26] 2026-03-02 14:32:35,762 | INFO     | . payload execution = 4015 s
[2026-03-02 15:33:26] 2026-03-02 14:32:35,762 | INFO     | . stage-out = 0 s
[2026-03-02 15:33:26] 2026-03-02 14:32:35,762 | INFO     | . log creation = 0 s
[2026-03-02 15:33:26] 2026-03-02 14:32:35,762 | INFO     | ..............................
[2026-03-02 15:33:26] 2026-03-02 14:32:35,809 | INFO     | 
[2026-03-02 15:33:26] 2026-03-02 14:32:35,809 | INFO     | job summary report
[2026-03-02 15:33:26] 2026-03-02 14:32:35,809 | INFO     | --------------------------------------------------
[2026-03-02 15:33:26] 2026-03-02 14:32:35,809 | INFO     | PanDA job id: 7035104933
[2026-03-02 15:33:26] 2026-03-02 14:32:35,809 | INFO     | task id: 48700906
[2026-03-02 15:33:26] 2026-03-02 14:32:35,809 | INFO     | errors: (none)
[2026-03-02 15:33:26] 2026-03-02 14:32:35,809 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-02 15:33:26] 2026-03-02 14:32:35,809 | INFO     | pilot state: finished 
[2026-03-02 15:33:26] 2026-03-02 14:32:35,809 | INFO     | transexitcode: 0
[2026-03-02 15:33:26] 2026-03-02 14:32:35,809 | INFO     | exeerrorcode: 0
[2026-03-02 15:33:26] 2026-03-02 14:32:35,809 | INFO     | exeerrordiag: 
[2026-03-02 15:33:26] 2026-03-02 14:32:35,809 | INFO     | exitcode: 0
[2026-03-02 15:33:26] 2026-03-02 14:32:35,810 | INFO     | exitmsg: OK
[2026-03-02 15:33:26] 2026-03-02 14:32:35,810 | INFO     | cpuconsumptiontime: 15251 s
[2026-03-02 15:33:26] 2026-03-02 14:32:35,810 | INFO     | nevents: 400
[2026-03-02 15:33:26] 2026-03-02 14:32:35,810 | INFO     | neventsw: 0
[2026-03-02 15:33:26] 2026-03-02 14:32:35,810 | INFO     | pid: 87808
[2026-03-02 15:33:26] 2026-03-02 14:32:35,810 | INFO     | pgrp: 87808
[2026-03-02 15:33:26] 2026-03-02 14:32:35,810 | INFO     | corecount: 4
[2026-03-02 15:33:26] 2026-03-02 14:32:35,810 | INFO     | event service: False
[2026-03-02 15:33:26] 2026-03-02 14:32:35,810 | INFO     | sizes: {0: 2282176, 11: 2282176, 4023: 2308092, 4024: 2308091, 4025: 2317169, 4028: 2317225, 4032: 2317547}
[2026-03-02 15:33:26] 2026-03-02 14:32:35,810 | INFO     | --------------------------------------------------
[2026-03-02 15:33:26] 2026-03-02 14:32:35,810 | INFO     | 
[2026-03-02 15:33:26] 2026-03-02 14:32:35,810 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot200/slots/0
[2026-03-02 15:33:26] 2026-03-02 14:32:35,831 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-02 15:33:26] 2026-03-02 14:32:35,831 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-02 15:33:26] 2026-03-02 14:32:35,831 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-02 15:33:26] 2026-03-02 14:32:35,832 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-02 15:33:26] 2026-03-02 14:32:35,832 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-02 15:33:26] 2026-03-02 14:32:35,832 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-02 15:33:26] 2026-03-02 14:32:35,832 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-02 15:33:26] 2026-03-02 14:32:35,832 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-02 15:33:26] 2026-03-02 14:32:35,832 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-02 15:33:26] 2026-03-02 14:32:35,832 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-02 15:33:26] 2026-03-02 14:32:35,832 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-02 15:33:26] 2026-03-02 14:32:35,832 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-02 15:33:26] 2026-03-02 14:32:35,832 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-02 15:33:26] 2026-03-02 14:32:35,832 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-02 15:33:26] 2026-03-02 14:32:35,832 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-02 15:33:26] 2026-03-02 14:32:35,832 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-02 15:33:26] 2026-03-02 14:32:35,832 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-02 15:33:26] 2026-03-02 14:32:35,832 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-02 15:33:26] 2026-03-02 14:32:35,832 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-02 15:33:26] 2026-03-02 14:32:35,832 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-02 15:33:26] 2026-03-02 14:32:35,832 | INFO     | job 7035104933 has completed (purged errors)
[2026-03-02 15:33:26] 2026-03-02 14:32:35,832 | INFO     | overall cleanup function is called
[2026-03-02 15:33:26] 2026-03-02 14:32:36,838 | INFO     | --- collectZombieJob: --- 10, [87808]
[2026-03-02 15:33:26] 2026-03-02 14:32:36,838 | INFO     | zombie collector waiting for pid 87808
[2026-03-02 15:33:26] 2026-03-02 14:32:36,838 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-02 15:33:26] 2026-03-02 14:32:36,838 | INFO     | collected zombie processes
[2026-03-02 15:33:26] 2026-03-02 14:32:36,838 | INFO     | will attempt to kill all subprocesses of pid=87808
[2026-03-02 15:33:26] 2026-03-02 14:32:37,290 | INFO     | process IDs to be killed: [87808] (in reverse order)
[2026-03-02 15:33:26] 2026-03-02 14:32:37,499 | WARNING  | found no corresponding commands to process id(s)
[2026-03-02 15:33:26] 2026-03-02 14:32:37,500 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-02 15:33:26] 2026-03-02 14:32:37,528 | INFO     | did not find any defunct processes belonging to 87808
[2026-03-02 15:33:26] 2026-03-02 14:32:37,555 | INFO     | did not find any defunct processes belonging to 87808
[2026-03-02 15:33:26] 2026-03-02 14:32:37,556 | INFO     | ready for new job
[2026-03-02 15:33:26] 2026-03-02 14:32:37,556 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-02 15:33:26] 2026-03-02 14:32:37,557 | INFO     | **************************************
[2026-03-02 15:33:26] 2026-03-02 14:32:37,557 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-02 15:33:26] 2026-03-02 14:32:37,557 | INFO     | **************************************
[2026-03-02 15:33:26] 2026-03-02 14:32:37,557 | INFO     | 
[2026-03-02 15:33:26] 2026-03-02 14:32:37,563 | INFO     | architecture information:
[2026-03-02 15:33:26] 2026-03-02 14:32:37,563 | INFO     | executing command: cat /etc/os-release
[2026-03-02 15:33:26] 2026-03-02 14:32:37,575 | INFO     | cat /etc/os-release:
[2026-03-02 15:33:26] NAME="CentOS Linux"
[2026-03-02 15:33:26] VERSION="7 (Core)"
[2026-03-02 15:33:26] ID="centos"
[2026-03-02 15:33:26] ID_LIKE="rhel fedora"
[2026-03-02 15:33:26] VERSION_ID="7"
[2026-03-02 15:33:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-02 15:33:26] ANSI_COLOR="0;31"
[2026-03-02 15:33:26] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-02 15:33:26] HOME_URL="https://www.centos.org/"
[2026-03-02 15:33:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-02 15:33:26] 
[2026-03-02 15:33:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-02 15:33:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-02 15:33:26] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-02 15:33:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-02 15:33:26] 
[2026-03-02 15:33:26] 2026-03-02 14:32:37,575 | INFO     | **************************************
[2026-03-02 15:33:26] 2026-03-02 14:32:38,078 | INFO     | executing command: df -mP /var/lib/boinc/var/slot200/slots/0
[2026-03-02 15:33:26] 2026-03-02 14:32:38,094 | INFO     | sufficient remaining disk space (20899168256 B)
[2026-03-02 15:33:26] 2026-03-02 14:32:38,094 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-02 15:33:26] 2026-03-02 14:32:38,094 | INFO     | current server update state: UPDATING_FINAL
[2026-03-02 15:33:26] 2026-03-02 14:32:38,094 | INFO     | update_server=False
[2026-03-02 15:33:26] 2026-03-02 14:32:38,094 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-02 15:33:26] 2026-03-02 14:32:38,449 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-02 15:33:26] 2026-03-02 14:32:38,609 | INFO     | all data control threads have been joined
[2026-03-02 15:33:26] 2026-03-02 14:32:38,729 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-02 15:33:26] 2026-03-02 14:32:38,730 | INFO     | aborting loop
[2026-03-02 15:33:26] 2026-03-02 14:32:38,907 | INFO     | all payload control threads have been joined
[2026-03-02 15:33:26] 2026-03-02 14:32:39,099 | INFO     | [job] retrieve thread has finished
[2026-03-02 15:33:26] 2026-03-02 14:32:39,194 | INFO     | [payload] execute_payloads thread has finished
[2026-03-02 15:33:26] 2026-03-02 14:32:39,402 | INFO     | all job control threads have been joined
[2026-03-02 15:33:26] 2026-03-02 14:32:39,562 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-02 15:33:26] 2026-03-02 14:32:39,615 | INFO     | [data] control thread has finished
[2026-03-02 15:33:26] 2026-03-02 14:32:39,735 | INFO     | [job] job monitor thread has finished
[2026-03-02 15:33:26] 2026-03-02 14:32:39,913 | INFO     | [payload] control thread has finished
[2026-03-02 15:33:26] 2026-03-02 14:32:39,920 | INFO     | [job] validate thread has finished
[2026-03-02 15:33:26] 2026-03-02 14:32:39,962 | INFO     | [payload] failed_post thread has finished
[2026-03-02 15:33:26] 2026-03-02 14:32:40,180 | INFO     | [job] create_data_payload thread has finished
[2026-03-02 15:33:26] 2026-03-02 14:32:40,289 | INFO     | [payload] validate_pre thread has finished
[2026-03-02 15:33:26] 2026-03-02 14:32:40,407 | INFO     | [job] control thread has finished
[2026-03-02 15:33:26] 2026-03-02 14:32:40,526 | INFO     | [payload] validate_post thread has finished
[2026-03-02 15:33:26] 2026-03-02 14:32:40,562 | INFO     | [data] copytool_in thread has finished
[2026-03-02 15:33:26] 2026-03-02 14:32:40,818 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-02 15:33:26] 2026-03-02 14:32:41,568 | INFO     | [data] copytool_out thread has finished
[2026-03-02 15:33:26] 2026-03-02 14:32:41,823 | INFO     | [job] queue monitor thread has finished
[2026-03-02 15:33:26] 2026-03-02 14:32:42,455 | INFO     | [data] queue_monitor thread has finished
[2026-03-02 15:33:26] 2026-03-02 14:32:48,561 | INFO     | job.realtimelogging is not enabled
[2026-03-02 15:33:26] 2026-03-02 14:32:49,565 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-02 15:33:26] 2026-03-02 14:33:07,636 | INFO     | PID=81977 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-02 15:33:26] 2026-03-02 14:33:07,636 | INFO     | .. there are 46 such processes running
[2026-03-02 15:33:26] 2026-03-02 14:33:07,636 | INFO     | found 0 job(s) in 20 queues
[2026-03-02 15:33:26] 2026-03-02 14:33:07,637 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-02 15:33:26] 2026-03-02 14:33:07,637 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-02 15:33:26] 2026-03-02 14:33:19,445 | INFO     | [monitor] cgroup control has ended
[2026-03-02 15:33:26] 2026-03-02 14:33:21,077 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23291032438592)>', '<ExcThread(monitor, started 23290720519936)>']
[2026-03-02 15:33:26] 2026-03-02 14:33:21,698 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-02 15:33:26] 2026-03-02 14:33:21,698 | INFO     | [monitor] control thread has ended
[2026-03-02 15:33:26] 2026-03-02 14:33:26,102 | INFO     | all workflow threads have been joined
[2026-03-02 15:33:26] 2026-03-02 14:33:26,103 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-02 15:33:26] 2026-03-02 14:33:26,103 | INFO     | traces error code: 0
[2026-03-02 15:33:26] 2026-03-02 14:33:26,103 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-02 15:33:26] 2026-03-02 14:33:26,301 [wrapper] ==== pilot stdout END ====
[2026-03-02 15:33:26] 2026-03-02 14:33:26,303 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-02 15:33:26] 2026-03-02 14:33:26,305 [wrapper] pilotpid: 81977
[2026-03-02 15:33:26] 2026-03-02 14:33:26,307 [wrapper] Pilot exit status: 0
[2026-03-02 15:33:26] 2026-03-02 14:33:26,315 [wrapper] pandaids: 7035104933
[2026-03-02 15:33:26] 2026-03-02 14:33:26,447 [wrapper] cleanup supervisor_pilot  626607 81978
[2026-03-02 15:33:26] 2026-03-02 14:33:26,450 [wrapper] Test setup, not cleaning
[2026-03-02 15:33:26] 2026-03-02 14:33:26,454 [wrapper] apfmon messages muted
[2026-03-02 15:33:26] 2026-03-02 14:33:26,456 [wrapper] ==== wrapper stdout END ====
[2026-03-02 15:33:26] 2026-03-02 14:33:26,460 [wrapper] ==== wrapper stderr END ====
[2026-03-02 15:33:26]  *** Error codes and diagnostics ***
[2026-03-02 15:33:26]     "exeErrorCode": 0,
[2026-03-02 15:33:26]     "exeErrorDiag": "",
[2026-03-02 15:33:26]     "pilotErrorCode": 0,
[2026-03-02 15:33:26]     "pilotErrorDiag": "",
[2026-03-02 15:33:26]  *** Listing of results directory ***
[2026-03-02 15:33:26] total 334552
[2026-03-02 15:33:26] -rw-r--r--. 1 boinc boinc    584627 Mar  1 13:55 pilot3.tar.gz
[2026-03-02 15:33:26] -rwx------. 1 boinc boinc     36322 Mar  1 14:46 runpilot2-wrapper.sh
[2026-03-02 15:33:26] -rw-r--r--. 1 boinc boinc      5111 Mar  1 14:48 queuedata.json
[2026-03-02 15:33:26] -rw-r--r--. 1 boinc boinc       100 Mar  2 14:24 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-02 15:33:26] -rwxr-xr-x. 1 boinc boinc      7986 Mar  2 14:24 run_atlas
[2026-03-02 15:33:26] -rw-r--r--. 1 boinc boinc       105 Mar  2 14:24 job.xml
[2026-03-02 15:33:26] -rw-r--r--. 2 boinc boinc 188426427 Mar  2 14:25 EVNT.48700904._000116.pool.root.1
[2026-03-02 15:33:26] -rw-r--r--. 2 boinc boinc     15845 Mar  2 14:25 start_atlas.sh
[2026-03-02 15:33:26] drwxrwx--x. 2 boinc boinc      4096 Mar  2 14:25 shared
[2026-03-02 15:33:26] -rw-r--r--. 2 boinc boinc    597935 Mar  2 14:25 input.tar.gz
[2026-03-02 15:33:26] -rw-r--r--. 1 boinc boinc      6705 Mar  2 14:25 init_data.xml
[2026-03-02 15:33:26] -rw-r--r--. 1 boinc boinc         0 Mar  2 14:25 boinc_lockfile
[2026-03-02 15:33:26] -rw-r--r--. 1 boinc boinc      2520 Mar  2 14:25 pandaJob.out
[2026-03-02 15:33:26] -rw-------. 1 boinc boinc    998143 Mar  2 14:25 agis_schedconf.cvmfs.json
[2026-03-02 15:33:26] -rw-------. 1 boinc boinc   1513015 Mar  2 14:25 agis_ddmendpoints.agis.ALL.json
[2026-03-02 15:33:26] -rw-------. 1 boinc boinc       444 Mar  2 14:25 workernode_map.json
[2026-03-02 15:33:26] drwx------. 5 boinc boinc      4096 Mar  2 14:25 pilot3
[2026-03-02 15:33:26] -rw-------. 1 boinc boinc 148495868 Mar  2 15:32 HITS.48700906._002672.pool.root.1
[2026-03-02 15:33:26] -rw-------. 1 boinc boinc      1029 Mar  2 15:32 memory_monitor_summary.json
[2026-03-02 15:33:26] -rw-r--r--. 1 boinc boinc       529 Mar  2 15:32 boinc_task_state.xml
[2026-03-02 15:33:26] -rw-------. 1 boinc boinc    267054 Mar  2 15:32 log.48700906._002672.job.log.tgz.1
[2026-03-02 15:33:26] -rw-------. 1 boinc boinc      6349 Mar  2 15:32 heartbeat.json
[2026-03-02 15:33:26] -rw-r--r--. 1 boinc boinc        27 Mar  2 15:32 wrapper_checkpoint.txt
[2026-03-02 15:33:26] -rw-------. 1 boinc boinc        95 Mar  2 15:33 pilot_heartbeat.json
[2026-03-02 15:33:26] -rw-r--r--. 1 boinc boinc      8192 Mar  2 15:33 boinc_mmap_file
[2026-03-02 15:33:26] -rw-------. 1 boinc boinc      4900 Mar  2 15:33 pilotlog.txt
[2026-03-02 15:33:26] -rw-------. 1 boinc boinc    600949 Mar  2 15:33 log.48700906._002672.job.log.1
[2026-03-02 15:33:26] -rw-------. 1 boinc boinc       357 Mar  2 15:33 output.list
[2026-03-02 15:33:26] -rw-r--r--. 1 boinc boinc       620 Mar  2 15:33 runtime_log
[2026-03-02 15:33:26] -rw-------. 1 boinc boinc    880640 Mar  2 15:33 result.tar.gz
[2026-03-02 15:33:26] -rw-r--r--. 1 boinc boinc      9221 Mar  2 15:33 runtime_log.err
[2026-03-02 15:33:26] -rw-------. 1 boinc boinc       662 Mar  2 15:33 YJhNDmNJwG9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmgUALDmAt4JQo.diag
[2026-03-02 15:33:26] -rw-r--r--. 1 boinc boinc     21672 Mar  2 15:33 stderr.txt
[2026-03-02 15:33:26] HITS file was successfully produced:
[2026-03-02 15:33:26] -rw-------. 1 boinc boinc 148495868 Mar  2 15:32 shared/HITS.pool.root.1
[2026-03-02 15:33:26]  *** Contents of shared directory: ***
[2026-03-02 15:33:26] total 330496
[2026-03-02 15:33:26] -rw-r--r--. 2 boinc boinc 188426427 Mar  2 14:25 ATLAS.root_0
[2026-03-02 15:33:26] -rw-r--r--. 2 boinc boinc     15845 Mar  2 14:25 start_atlas.sh
[2026-03-02 15:33:26] -rw-r--r--. 2 boinc boinc    597935 Mar  2 14:25 input.tar.gz
[2026-03-02 15:33:26] -rw-------. 1 boinc boinc 148495868 Mar  2 15:32 HITS.pool.root.1
[2026-03-02 15:33:26] -rw-------. 1 boinc boinc    880640 Mar  2 15:33 result.tar.gz
15:33:27 (77158): run_atlas exited; CPU time 15437.789045
15:33:27 (77158): called boinc_finish(0)

</stderr_txt>
]]>

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