Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:38:38 (3422820): wrapper (7.7.26015): starting
10:38:38 (3422820): wrapper: running run_atlas (--nthreads 4)
[2026-03-03 10:38:38] Arguments: --nthreads 4
[2026-03-03 10:38:38] Threads: 4
[2026-03-03 10:38:38] Checking for CVMFS
[2026-03-03 10:38:38] No cvmfs_config command found, will try listing directly
[2026-03-03 10:38:38] CVMFS is ok
[2026-03-03 10:38:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-03 10:38:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-03 10:38:38] Further information can be found at the LHC@home message board.
[2026-03-03 10:38:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-03 10:38:38] Checking for apptainer binary...
[2026-03-03 10:38:38] which: no apptainer in ((null))
[2026-03-03 10:38:38] apptainer is not installed, using version from CVMFS
[2026-03-03 10:38:38] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-03 10:38:38] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot80/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut16.grid.cesnet.cz
[2026-03-03 10:38:38] apptainer works
[2026-03-03 10:38:38] Set ATHENA_PROC_NUMBER=4
[2026-03-03 10:38:38] Set ATHENA_CORE_NUMBER=4
[2026-03-03 10:38:38] Starting ATLAS job with PandaID=7035113412
[2026-03-03 10:38:38] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot80/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-03 13:56:02]  *** The last 200 lines of the pilot log: ***
[2026-03-03 13:56:02] 2026-03-03 12:45:21,934 | INFO     | extracted standard info from prmon json
[2026-03-03 13:56:02] 2026-03-03 12:45:21,934 | INFO     | extracted standard memory fields from prmon json
[2026-03-03 13:56:02] 2026-03-03 12:45:21,934 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-03 13:56:02] 2026-03-03 12:45:21,934 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-03 13:56:02] 2026-03-03 12:45:21,934 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-03 13:56:02] 2026-03-03 12:45:21,938 | INFO     | fitting pss+swap vs Time
[2026-03-03 13:56:02] 2026-03-03 12:45:21,938 | INFO     | sum of square deviations: 1900284932.0
[2026-03-03 13:56:02] 2026-03-03 12:45:21,939 | INFO     | sum of deviations: 22048107057.999996
[2026-03-03 13:56:02] 2026-03-03 12:45:21,939 | INFO     | mean x: 1772536322.0
[2026-03-03 13:56:02] 2026-03-03 12:45:21,940 | INFO     | mean y: 2332178.2622950817
[2026-03-03 13:56:02] 2026-03-03 12:45:21,940 | INFO     | intersect: -20563568194.64534
[2026-03-03 13:56:02] 2026-03-03 12:45:21,940 | INFO     | chi2: 1.3800427658989585
[2026-03-03 13:56:02] 2026-03-03 12:45:21,940 | INFO     | sum of square deviations: 1748737904.5
[2026-03-03 13:56:02] 2026-03-03 12:45:21,941 | INFO     | sum of deviations: 21381644756.5
[2026-03-03 13:56:02] 2026-03-03 12:45:21,942 | INFO     | mean x: 1772536169.5
[2026-03-03 13:56:02] 2026-03-03 12:45:21,942 | INFO     | mean y: 2331507.387640449
[2026-03-03 13:56:02] 2026-03-03 12:45:21,942 | INFO     | intersect: -21670292272.75086
[2026-03-03 13:56:02] 2026-03-03 12:45:21,942 | INFO     | chi2: 1.3810228547187973
[2026-03-03 13:56:02] 2026-03-03 12:45:21,942 | INFO     | current chi2=1.3810228547187973 (change=-0.07101872811893399 %)
[2026-03-03 13:56:02] 2026-03-03 12:45:21,942 | INFO     | right removable region: 177
[2026-03-03 13:56:02] 2026-03-03 12:45:21,943 | INFO     | sum of square deviations: 1748737904.5
[2026-03-03 13:56:02] 2026-03-03 12:45:21,944 | INFO     | sum of deviations: -2051702792.0000005
[2026-03-03 13:56:02] 2026-03-03 12:45:21,944 | INFO     | mean x: 1772536474.5
[2026-03-03 13:56:02] 2026-03-03 12:45:21,944 | INFO     | mean y: 2356095.8988764044
[2026-03-03 13:56:02] 2026-03-03 12:45:21,944 | INFO     | intersect: 2081980506.3352134
[2026-03-03 13:56:02] 2026-03-03 12:45:21,944 | INFO     | chi2: 0.010609403765461335
[2026-03-03 13:56:02] 2026-03-03 12:45:21,945 | INFO     | current chi2=0.010609403765461335 (change=99.23122644981582 %)
[2026-03-03 13:56:02] 2026-03-03 12:45:21,945 | INFO     | sum of square deviations: 1605470102.0
[2026-03-03 13:56:02] 2026-03-03 12:45:21,946 | INFO     | sum of deviations: -2957767877.9999995
[2026-03-03 13:56:02] 2026-03-03 12:45:21,946 | INFO     | mean x: 1772536627.0
[2026-03-03 13:56:02] 2026-03-03 12:45:21,946 | INFO     | mean y: 2357039.809248555
[2026-03-03 13:56:02] 2026-03-03 12:45:21,946 | INFO     | intersect: 3267912649.588562
[2026-03-03 13:56:02] 2026-03-03 12:45:21,946 | INFO     | chi2: 0.006249461841912362
[2026-03-03 13:56:02] 2026-03-03 12:45:21,947 | INFO     | current chi2=0.006249461841912362 (change=41.0950701842705 %)
[2026-03-03 13:56:02] 2026-03-03 12:45:21,947 | INFO     | sum of square deviations: 1470248962.0
[2026-03-03 13:56:02] 2026-03-03 12:45:21,948 | INFO     | sum of deviations: -2452476879.0
[2026-03-03 13:56:02] 2026-03-03 12:45:21,948 | INFO     | mean x: 1772536779.5
[2026-03-03 13:56:02] 2026-03-03 12:45:21,948 | INFO     | mean y: 2356467.404761905
[2026-03-03 13:56:02] 2026-03-03 12:45:21,948 | INFO     | intersect: 2959070317.4097595
[2026-03-03 13:56:02] 2026-03-03 12:45:21,948 | INFO     | chi2: 0.006130042748678479
[2026-03-03 13:56:02] 2026-03-03 12:45:21,948 | INFO     | current chi2=0.006130042748678479 (change=1.9108700277677106 %)
[2026-03-03 13:56:02] 2026-03-03 12:45:21,949 | INFO     | left removable region: 30
[2026-03-03 13:56:02] 2026-03-03 12:45:21,949 | INFO     | sum of square deviations: 984941258.0
[2026-03-03 13:56:02] 2026-03-03 12:45:21,950 | INFO     | sum of deviations: 773947260.0
[2026-03-03 13:56:02] 2026-03-03 12:45:21,950 | INFO     | mean x: 1772537054.0
[2026-03-03 13:56:02] 2026-03-03 12:45:21,950 | INFO     | mean y: 2352031.258503401
[2026-03-03 13:56:02] 2026-03-03 12:45:21,950 | INFO     | intersect: -1390472347.9104846
[2026-03-03 13:56:02] 2026-03-03 12:45:21,950 | INFO     | chi2: 0.001047471038001644
[2026-03-03 13:56:02] 2026-03-03 12:45:21,950 | INFO     | current memory leak: 0.79 B/s (using 147 data points, chi2=0.00)
[2026-03-03 13:56:02] 2026-03-03 12:45:21,951 | INFO     | could have reported an average CPU frequency of 2707 MHz (10 samples)
[2026-03-03 13:56:02] 2026-03-03 12:45:21,951 | INFO     | ..............................
[2026-03-03 13:56:02] 2026-03-03 12:45:21,951 | INFO     | . Timing measurements:
[2026-03-03 13:56:02] 2026-03-03 12:45:21,951 | INFO     | . get job = 0 s
[2026-03-03 13:56:02] 2026-03-03 12:45:21,951 | INFO     | . initial setup = 9 s
[2026-03-03 13:56:02] 2026-03-03 12:45:21,951 | INFO     | . payload setup = 9 s
[2026-03-03 13:56:02] 2026-03-03 12:45:21,951 | INFO     | . stage-in = 0 s
[2026-03-03 13:56:02] 2026-03-03 12:45:21,952 | INFO     | . payload execution = 11154 s
[2026-03-03 13:56:02] 2026-03-03 12:45:21,952 | INFO     | . stage-out = 1 s
[2026-03-03 13:56:02] 2026-03-03 12:45:21,952 | INFO     | . log creation = 0 s
[2026-03-03 13:56:02] 2026-03-03 12:45:21,952 | INFO     | ..............................
[2026-03-03 13:56:02] 2026-03-03 12:45:22,048 | INFO     | 
[2026-03-03 13:56:02] 2026-03-03 12:45:22,048 | INFO     | job summary report
[2026-03-03 13:56:02] 2026-03-03 12:45:22,048 | INFO     | --------------------------------------------------
[2026-03-03 13:56:02] 2026-03-03 12:45:22,048 | INFO     | PanDA job id: 7035113412
[2026-03-03 13:56:02] 2026-03-03 12:45:22,048 | INFO     | task id: 48838462
[2026-03-03 13:56:02] 2026-03-03 12:45:22,049 | INFO     | errors: (none)
[2026-03-03 13:56:02] 2026-03-03 12:45:22,049 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-03 13:56:02] 2026-03-03 12:45:22,049 | INFO     | pilot state: finished 
[2026-03-03 13:56:02] 2026-03-03 12:45:22,049 | INFO     | transexitcode: 0
[2026-03-03 13:56:02] 2026-03-03 12:45:22,049 | INFO     | exeerrorcode: 0
[2026-03-03 13:56:02] 2026-03-03 12:45:22,049 | INFO     | exeerrordiag: 
[2026-03-03 13:56:02] 2026-03-03 12:45:22,049 | INFO     | exitcode: 0
[2026-03-03 13:56:02] 2026-03-03 12:45:22,049 | INFO     | exitmsg: OK
[2026-03-03 13:56:02] 2026-03-03 12:45:22,049 | INFO     | cpuconsumptiontime: 42088 s
[2026-03-03 13:56:02] 2026-03-03 12:45:22,049 | INFO     | nevents: 400
[2026-03-03 13:56:02] 2026-03-03 12:45:22,049 | INFO     | neventsw: 0
[2026-03-03 13:56:02] 2026-03-03 12:45:22,049 | INFO     | pid: 3454145
[2026-03-03 13:56:02] 2026-03-03 12:45:22,049 | INFO     | pgrp: 3454145
[2026-03-03 13:56:02] 2026-03-03 12:45:22,050 | INFO     | corecount: 4
[2026-03-03 13:56:02] 2026-03-03 12:45:22,050 | INFO     | event service: False
[2026-03-03 13:56:02] 2026-03-03 12:45:22,050 | INFO     | sizes: {0: 2281852, 1: 2282313, 12: 2282313, 11166: 2311901, 11168: 2325914}
[2026-03-03 13:56:02] 2026-03-03 12:45:22,050 | INFO     | --------------------------------------------------
[2026-03-03 13:56:02] 2026-03-03 12:45:22,050 | INFO     | 
[2026-03-03 13:56:02] 2026-03-03 12:45:22,050 | INFO     | executing command: ls -lF /scratch/boinc/var/slot80/slots/0
[2026-03-03 13:56:02] 2026-03-03 12:45:22,077 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-03 13:56:02] 2026-03-03 12:45:22,077 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-03 13:56:02] 2026-03-03 12:45:22,077 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-03 13:56:02] 2026-03-03 12:45:22,077 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-03 13:56:02] 2026-03-03 12:45:22,078 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-03 13:56:02] 2026-03-03 12:45:22,078 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-03 13:56:02] 2026-03-03 12:45:22,078 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-03 13:56:02] 2026-03-03 12:45:22,078 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-03 13:56:02] 2026-03-03 12:45:22,078 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-03 13:56:02] 2026-03-03 12:45:22,078 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-03 13:56:02] 2026-03-03 12:45:22,078 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-03 13:56:02] 2026-03-03 12:45:22,078 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-03 13:56:02] 2026-03-03 12:45:22,078 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-03 13:56:02] 2026-03-03 12:45:22,078 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-03 13:56:02] 2026-03-03 12:45:22,079 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-03 13:56:02] 2026-03-03 12:45:22,079 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-03 13:56:02] 2026-03-03 12:45:22,079 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-03 13:56:02] 2026-03-03 12:45:22,079 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-03 13:56:02] 2026-03-03 12:45:22,079 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-03 13:56:02] 2026-03-03 12:45:22,079 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-03 13:56:02] 2026-03-03 12:45:22,079 | INFO     | job 7035113412 has completed (purged errors)
[2026-03-03 13:56:02] 2026-03-03 12:45:22,079 | INFO     | overall cleanup function is called
[2026-03-03 13:56:02] 2026-03-03 12:45:23,089 | INFO     | --- collectZombieJob: --- 10, [3454145]
[2026-03-03 13:56:02] 2026-03-03 12:45:23,089 | INFO     | zombie collector waiting for pid 3454145
[2026-03-03 13:56:02] 2026-03-03 12:45:23,089 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-03 13:56:02] 2026-03-03 12:45:23,089 | INFO     | collected zombie processes
[2026-03-03 13:56:02] 2026-03-03 12:45:23,089 | INFO     | will attempt to kill all subprocesses of pid=3454145
[2026-03-03 13:56:02] 2026-03-03 12:45:24,236 | INFO     | process IDs to be killed: [3454145] (in reverse order)
[2026-03-03 13:56:02] 2026-03-03 12:45:24,562 | WARNING  | found no corresponding commands to process id(s)
[2026-03-03 13:56:02] 2026-03-03 12:45:24,563 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-03 13:56:02] 2026-03-03 12:45:24,619 | INFO     | did not find any defunct processes belonging to 3454145
[2026-03-03 13:56:02] 2026-03-03 12:45:24,689 | INFO     | did not find any defunct processes belonging to 3454145
[2026-03-03 13:56:02] 2026-03-03 12:45:24,689 | INFO     | ready for new job
[2026-03-03 13:56:02] 2026-03-03 12:45:24,690 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-03 13:56:02] 2026-03-03 12:45:24,692 | INFO     | **************************************
[2026-03-03 13:56:02] 2026-03-03 12:45:24,692 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-03 13:56:02] 2026-03-03 12:45:24,692 | INFO     | **************************************
[2026-03-03 13:56:02] 2026-03-03 12:45:24,692 | INFO     | 
[2026-03-03 13:56:02] 2026-03-03 12:45:24,703 | INFO     | architecture information:
[2026-03-03 13:56:02] 2026-03-03 12:45:24,704 | INFO     | executing command: cat /etc/os-release
[2026-03-03 13:56:02] 2026-03-03 12:45:24,730 | INFO     | cat /etc/os-release:
[2026-03-03 13:56:02] NAME="CentOS Linux"
[2026-03-03 13:56:02] VERSION="7 (Core)"
[2026-03-03 13:56:02] ID="centos"
[2026-03-03 13:56:02] ID_LIKE="rhel fedora"
[2026-03-03 13:56:02] VERSION_ID="7"
[2026-03-03 13:56:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-03 13:56:02] ANSI_COLOR="0;31"
[2026-03-03 13:56:02] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-03 13:56:02] HOME_URL="https://www.centos.org/"
[2026-03-03 13:56:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-03 13:56:02] 
[2026-03-03 13:56:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-03 13:56:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-03 13:56:02] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-03 13:56:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-03 13:56:02] 
[2026-03-03 13:56:02] 2026-03-03 12:45:24,730 | INFO     | **************************************
[2026-03-03 13:56:02] 2026-03-03 12:45:24,956 | WARNING  | process 3454145 can no longer be monitored (due to stat problems) - aborting
[2026-03-03 13:56:02] 2026-03-03 12:45:25,233 | INFO     | executing command: df -mP /scratch/boinc/var/slot80/slots/0
[2026-03-03 13:56:02] 2026-03-03 12:45:25,260 | INFO     | sufficient remaining disk space (3329635647488 B)
[2026-03-03 13:56:02] 2026-03-03 12:45:25,261 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-03 13:56:02] 2026-03-03 12:45:25,261 | INFO     | current server update state: UPDATING_FINAL
[2026-03-03 13:56:02] 2026-03-03 12:45:25,261 | INFO     | update_server=False
[2026-03-03 13:56:02] 2026-03-03 12:45:25,261 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-03 13:56:02] 2026-03-03 12:45:25,262 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-03 13:56:02] 2026-03-03 12:45:25,561 | INFO     | using path: /scratch/boinc/var/slot80/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-03 13:56:02] 2026-03-03 12:45:25,706 | INFO     | all data control threads have been joined
[2026-03-03 13:56:02] 2026-03-03 12:45:25,897 | INFO     | all payload control threads have been joined
[2026-03-03 13:56:02] 2026-03-03 12:45:26,267 | INFO     | [job] retrieve thread has finished
[2026-03-03 13:56:02] 2026-03-03 12:45:26,309 | INFO     | [data] copytool_in thread has finished
[2026-03-03 13:56:02] 2026-03-03 12:45:26,380 | INFO     | number of running child processes to parent process 3454145: 1
[2026-03-03 13:56:02] 2026-03-03 12:45:26,381 | INFO     | maximum number of monitored processes: 6
[2026-03-03 13:56:02] 2026-03-03 12:45:26,381 | INFO     | aborting job monitoring since job object (job id=7035113412) has expired
[2026-03-03 13:56:02] 2026-03-03 12:45:26,381 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-03 13:56:02] 2026-03-03 12:45:26,381 | INFO     | will abort loop
[2026-03-03 13:56:02] 2026-03-03 12:45:26,401 | INFO     | [job] create_data_payload thread has finished
[2026-03-03 13:56:02] 2026-03-03 12:45:26,455 | INFO     | [payload] validate_post thread has finished
[2026-03-03 13:56:02] 2026-03-03 12:45:26,632 | INFO     | all job control threads have been joined
[2026-03-03 13:56:02] 2026-03-03 12:45:26,711 | INFO     | [data] control thread has finished
[2026-03-03 13:56:02] 2026-03-03 12:45:26,871 | INFO     | [payload] failed_post thread has finished
[2026-03-03 13:56:02] 2026-03-03 12:45:26,903 | INFO     | [payload] control thread has finished
[2026-03-03 13:56:02] 2026-03-03 12:45:27,011 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-03 13:56:02] 2026-03-03 12:45:27,058 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-03 13:56:02] 2026-03-03 12:45:27,267 | INFO     | [data] copytool_out thread has finished
[2026-03-03 13:56:02] 2026-03-03 12:45:27,386 | INFO     | [job] job monitor thread has finished
[2026-03-03 13:56:02] 2026-03-03 12:45:27,428 | INFO     | [job] validate thread has finished
[2026-03-03 13:56:02] 2026-03-03 12:45:27,456 | INFO     | [payload] execute_payloads thread has finished
[2026-03-03 13:56:02] 2026-03-03 12:45:27,637 | INFO     | [job] control thread has finished
[2026-03-03 13:56:02] 2026-03-03 12:45:27,756 | INFO     | [payload] validate_pre thread has finished
[2026-03-03 13:56:02] 2026-03-03 12:45:27,910 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-03 13:56:02] 2026-03-03 12:45:28,063 | INFO     | [job] queue monitor thread has finished
[2026-03-03 13:56:02] 2026-03-03 12:45:31,916 | INFO     | [data] queue_monitor thread has finished
[2026-03-03 13:56:02] 2026-03-03 12:45:55,676 | INFO     | PID=3432660 has CPU usage=15.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-03 13:56:02] 2026-03-03 12:45:55,677 | INFO     | .. there are 19 such processes running
[2026-03-03 13:56:02] 2026-03-03 12:45:55,677 | INFO     | found 0 job(s) in 20 queues
[2026-03-03 13:56:02] 2026-03-03 12:45:55,677 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-03 13:56:02] 2026-03-03 12:45:55,677 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-03 13:56:02] 2026-03-03 12:46:20,652 | INFO     | [monitor] cgroup control has ended
[2026-03-03 13:56:02] 2026-03-03 12:46:21,230 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22412722333504)>', '<ExcThread(monitor, started 22412410214144)>']
[2026-03-03 13:56:02] 2026-03-03 12:46:21,805 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-03 13:56:02] 2026-03-03 12:46:21,805 | INFO     | [monitor] control thread has ended
[2026-03-03 13:56:02] 2026-03-03 12:46:26,255 | INFO     | all workflow threads have been joined
[2026-03-03 13:56:02] 2026-03-03 12:46:26,255 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-03 13:56:02] 2026-03-03 12:46:26,255 | INFO     | traces error code: 0
[2026-03-03 13:56:02] 2026-03-03 12:46:26,255 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-03 13:56:02] 2026-03-03 12:46:26,391 [wrapper] ==== pilot stdout END ====
[2026-03-03 13:56:02] 2026-03-03 12:46:26,395 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-03 13:56:02] 2026-03-03 12:46:26,399 [wrapper] pilotpid: 3432660
[2026-03-03 13:56:02] 2026-03-03 12:46:26,402 [wrapper] Pilot exit status: 0
[2026-03-03 13:56:02] 2026-03-03 12:46:26,416 [wrapper] pandaids: 7035113412
[2026-03-03 13:56:02] 2026-03-03 12:46:26,632 [wrapper] cleanup supervisor_pilot 3730778 3432661
[2026-03-03 13:56:02] 2026-03-03 12:46:26,636 [wrapper] Test setup, not cleaning
[2026-03-03 13:56:02] 2026-03-03 12:46:26,640 [wrapper] apfmon messages muted
[2026-03-03 13:56:02] 2026-03-03 12:46:26,644 [wrapper] ==== wrapper stdout END ====
[2026-03-03 13:56:02] 2026-03-03 12:46:26,648 [wrapper] ==== wrapper stderr END ====
[2026-03-03 13:56:02]  *** Error codes and diagnostics ***
[2026-03-03 13:56:02]     "exeErrorCode": 0,
[2026-03-03 13:56:02]     "exeErrorDiag": "",
[2026-03-03 13:56:02]     "pilotErrorCode": 0,
[2026-03-03 13:56:02]     "pilotErrorDiag": "",
[2026-03-03 13:56:02]  *** Listing of results directory ***
[2026-03-03 13:56:02] total 484376
[2026-03-03 13:56:02] -rw-r--r-- 1 boinc boinc    584627 Mar  1 13:55 pilot3.tar.gz
[2026-03-03 13:56:02] -rwx------ 1 boinc boinc     36322 Mar  1 14:45 runpilot2-wrapper.sh
[2026-03-03 13:56:02] -rw-r--r-- 1 boinc boinc      5111 Mar  1 14:45 queuedata.json
[2026-03-03 13:56:02] -rw-r--r-- 1 boinc boinc       100 Mar  3 10:38 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-03 13:56:02] -rwxr-xr-x 1 boinc boinc      7986 Mar  3 10:38 run_atlas
[2026-03-03 13:56:02] -rw-r--r-- 1 boinc boinc       105 Mar  3 10:38 job.xml
[2026-03-03 13:56:02] -rw-r--r-- 1 boinc boinc      6699 Mar  3 10:38 init_data.xml
[2026-03-03 13:56:02] -rw-r--r-- 2 boinc boinc 278868692 Mar  3 10:38 EVNT.48220133._000151.pool.root.1
[2026-03-03 13:56:02] -rw-r--r-- 2 boinc boinc    597969 Mar  3 10:38 input.tar.gz
[2026-03-03 13:56:02] -rw-r--r-- 2 boinc boinc     15845 Mar  3 10:38 start_atlas.sh
[2026-03-03 13:56:02] drwxrwx--x 2 boinc boinc      4096 Mar  3 10:38 shared
[2026-03-03 13:56:02] -rw-r--r-- 1 boinc boinc         0 Mar  3 10:38 boinc_lockfile
[2026-03-03 13:56:02] -rw-r--r-- 1 boinc boinc      2562 Mar  3 10:38 pandaJob.out
[2026-03-03 13:56:02] -rw------- 1 boinc boinc    998412 Mar  3 10:38 agis_schedconf.cvmfs.json
[2026-03-03 13:56:02] -rw------- 1 boinc boinc       443 Mar  3 10:39 workernode_map.json
[2026-03-03 13:56:02] drwx------ 5 boinc boinc      4096 Mar  3 10:39 pilot3
[2026-03-03 13:56:02] -rw------- 1 boinc boinc 209402522 Mar  3 13:44 HITS.48838462._003368.pool.root.1
[2026-03-03 13:56:02] -rw-r--r-- 1 boinc boinc       528 Mar  3 13:44 boinc_task_state.xml
[2026-03-03 13:56:02] -rw------- 1 boinc boinc        95 Mar  3 13:45 pilot_heartbeat.json
[2026-03-03 13:56:02] -rw------- 1 boinc boinc      1025 Mar  3 13:45 memory_monitor_summary.json
[2026-03-03 13:56:02] -rw------- 1 boinc boinc   1516104 Mar  3 13:45 agis_ddmendpoints.agis.ALL.json
[2026-03-03 13:56:02] -rw------- 1 boinc boinc    349901 Mar  3 13:45 log.48838462._003368.job.log.tgz.1
[2026-03-03 13:56:02] -rw------- 1 boinc boinc      6362 Mar  3 13:45 heartbeat.json
[2026-03-03 13:56:02] -rw------- 1 boinc boinc      5364 Mar  3 13:46 pilotlog.txt
[2026-03-03 13:56:02] -rw------- 1 boinc boinc   1547110 Mar  3 13:46 log.48838462._003368.job.log.1
[2026-03-03 13:56:02] -rw------- 1 boinc boinc       357 Mar  3 13:46 output.list
[2026-03-03 13:56:02] -rw-r--r-- 1 boinc boinc       620 Mar  3 13:46 runtime_log
[2026-03-03 13:56:02] -rw------- 1 boinc boinc   1914880 Mar  3 13:46 result.tar.gz
[2026-03-03 13:56:02] -rw-r--r-- 1 boinc boinc      9205 Mar  3 13:46 runtime_log.err
[2026-03-03 13:56:02] -rw------- 1 boinc boinc       666 Mar  3 13:46 gLvMDmhHwG9n9Rq4apOajLDm4fhM0noT9bVooX4SDmfa8KDmrhgsQm.diag
[2026-03-03 13:56:02] -rw-r--r-- 1 boinc boinc        26 Mar  3 13:55 wrapper_checkpoint.txt
[2026-03-03 13:56:02] -rw-r--r-- 1 boinc boinc      8192 Mar  3 13:56 boinc_mmap_file
[2026-03-03 13:56:02] -rw-r--r-- 1 boinc boinc     20847 Mar  3 13:56 stderr.txt
[2026-03-03 13:56:02] HITS file was successfully produced:
[2026-03-03 13:56:02] -rw------- 1 boinc boinc 209402522 Mar  3 13:44 shared/HITS.pool.root.1
[2026-03-03 13:56:02]  *** Contents of shared directory: ***
[2026-03-03 13:56:02] total 479312
[2026-03-03 13:56:02] -rw-r--r-- 2 boinc boinc 278868692 Mar  3 10:38 ATLAS.root_0
[2026-03-03 13:56:02] -rw-r--r-- 2 boinc boinc    597969 Mar  3 10:38 input.tar.gz
[2026-03-03 13:56:02] -rw-r--r-- 2 boinc boinc     15845 Mar  3 10:38 start_atlas.sh
[2026-03-03 13:56:02] -rw------- 1 boinc boinc 209402522 Mar  3 13:44 HITS.pool.root.1
[2026-03-03 13:56:02] -rw------- 1 boinc boinc   1914880 Mar  3 13:46 result.tar.gz
13:56:03 (3422820): run_atlas exited; CPU time 42779.351555
13:56:03 (3422820): called boinc_finish(0)

</stderr_txt>
]]>

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