Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:07:25 (233371): wrapper (7.7.26015): starting
13:07:25 (233371): wrapper: running run_atlas (--nthreads 4)
[2026-03-02 13:07:25] Arguments: --nthreads 4
[2026-03-02 13:07:25] Threads: 4
[2026-03-02 13:07:25] Checking for CVMFS
[2026-03-02 13:07:25] No cvmfs_config command found, will try listing directly
[2026-03-02 13:07:25] CVMFS is ok
[2026-03-02 13:07:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-02 13:07:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-02 13:07:25] Further information can be found at the LHC@home message board.
[2026-03-02 13:07:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-02 13:07:25] Checking for apptainer binary...
[2026-03-02 13:07:25] which: no apptainer in ((null))
[2026-03-02 13:07:25] apptainer is not installed, using version from CVMFS
[2026-03-02 13:07:25] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-02 13:07:25] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot36/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut03.grid.cesnet.cz
[2026-03-02 13:07:25] apptainer works
[2026-03-02 13:07:25] Set ATHENA_PROC_NUMBER=4
[2026-03-02 13:07:25] Set ATHENA_CORE_NUMBER=4
[2026-03-02 13:07:25] Starting ATLAS job with PandaID=7035124563
[2026-03-02 13:07:25] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot36/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-02 16:44:10]  *** The last 200 lines of the pilot log: ***
[2026-03-02 16:44:10] 2026-03-02 15:43:23,298 | INFO     | preparing for final server update for job 7035124563 in state='finished'
[2026-03-02 16:44:10] 2026-03-02 15:43:23,997 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-03-02 16:44:10] 2026-03-02 15:43:23,998 | INFO     | reading metadata from: /scratch/boinc/var/slot36/slots/0/PanDA_Pilot-7035124563/jobReport.json
[2026-03-02 16:44:10] 2026-03-02 15:43:24,000 | INFO     | added worker_node to metadata from /scratch/boinc/var/slot36/slots/0/workernode_map.json
[2026-03-02 16:44:10] 2026-03-02 15:43:24,000 | INFO     | this job has now completed (state=finished)
[2026-03-02 16:44:10] 2026-03-02 15:43:24,001 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-02 16:44:10] 2026-03-02 15:43:24,001 | INFO     | log transfer has been attempted: DONE
[2026-03-02 16:44:10] 2026-03-02 15:43:24,001 | INFO     | job 7035124563 has finished - writing final server update
[2026-03-02 16:44:10] 2026-03-02 15:43:24,001 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2124279/.job.ad'
[2026-03-02 16:44:10] 2026-03-02 15:43:24,001 | INFO     | total number of processed events: 400 (read)
[2026-03-02 16:44:10] 2026-03-02 15:43:24,013 | INFO     | using path: /scratch/boinc/var/slot36/slots/0/PanDA_Pilot-7035124563/memory_monitor_summary.json (trf name=prmon)
[2026-03-02 16:44:10] 2026-03-02 15:43:24,014 | INFO     | extracted standard info from prmon json
[2026-03-02 16:44:10] 2026-03-02 15:43:24,014 | INFO     | extracted standard memory fields from prmon json
[2026-03-02 16:44:10] 2026-03-02 15:43:24,014 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-02 16:44:10] 2026-03-02 15:43:24,014 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-02 16:44:10] 2026-03-02 15:43:24,014 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-02 16:44:10] 2026-03-02 15:43:24,018 | INFO     | fitting pss+swap vs Time
[2026-03-02 16:44:10] 2026-03-02 15:43:24,019 | INFO     | sum of square deviations: 2954447953.0
[2026-03-02 16:44:10] 2026-03-02 15:43:24,020 | INFO     | sum of deviations: 8880796904.5
[2026-03-02 16:44:10] 2026-03-02 15:43:24,020 | INFO     | mean x: 1772459719.5
[2026-03-02 16:44:10] 2026-03-02 15:43:24,020 | INFO     | mean y: 2347273.2783018867
[2026-03-02 16:44:10] 2026-03-02 15:43:24,020 | INFO     | intersect: -5325502477.57041
[2026-03-02 16:44:10] 2026-03-02 15:43:24,021 | INFO     | chi2: 1.233875990226793
[2026-03-02 16:44:10] 2026-03-02 15:43:24,021 | INFO     | sum of square deviations: 2750295288.0
[2026-03-02 16:44:10] 2026-03-02 15:43:24,023 | INFO     | sum of deviations: 8508587379.000003
[2026-03-02 16:44:10] 2026-03-02 15:43:24,023 | INFO     | mean x: 1772459567.0
[2026-03-02 16:44:10] 2026-03-02 15:43:24,023 | INFO     | mean y: 2346995.193236715
[2026-03-02 16:44:10] 2026-03-02 15:43:24,023 | INFO     | intersect: -5481110423.857547
[2026-03-02 16:44:10] 2026-03-02 15:43:24,023 | INFO     | chi2: 1.2342034917370093
[2026-03-02 16:44:10] 2026-03-02 15:43:24,023 | INFO     | current chi2=1.2342034917370093 (change=-0.02654249801521901 %)
[2026-03-02 16:44:10] 2026-03-02 15:43:24,023 | INFO     | right removable region: 206
[2026-03-02 16:44:10] 2026-03-02 15:43:24,024 | INFO     | sum of square deviations: 2750295288.0
[2026-03-02 16:44:10] 2026-03-02 15:43:24,025 | INFO     | sum of deviations: -12661742001.000015
[2026-03-02 16:44:10] 2026-03-02 15:43:24,025 | INFO     | mean x: 1772459872.0
[2026-03-02 16:44:10] 2026-03-02 15:43:24,025 | INFO     | mean y: 2363097.6763285026
[2026-03-02 16:44:10] 2026-03-02 15:43:24,026 | INFO     | intersect: 8162370390.0967455
[2026-03-02 16:44:10] 2026-03-02 15:43:24,026 | INFO     | chi2: 0.03830805408035268
[2026-03-02 16:44:10] 2026-03-02 15:43:24,026 | INFO     | current chi2=0.03830805408035268 (change=96.89530760110573 %)
[2026-03-02 16:44:10] 2026-03-02 15:43:24,026 | INFO     | sum of square deviations: 2555770710.5
[2026-03-02 16:44:10] 2026-03-02 15:43:24,028 | INFO     | sum of deviations: -9967011216.500002
[2026-03-02 16:44:10] 2026-03-02 15:43:24,028 | INFO     | mean x: 1772460024.5
[2026-03-02 16:44:10] 2026-03-02 15:43:24,028 | INFO     | mean y: 2360981.836633663
[2026-03-02 16:44:10] 2026-03-02 15:43:24,028 | INFO     | intersect: 6914612097.4827795
[2026-03-02 16:44:10] 2026-03-02 15:43:24,028 | INFO     | chi2: 0.03406019082676403
[2026-03-02 16:44:10] 2026-03-02 15:43:24,028 | INFO     | current chi2=0.03406019082676403 (change=11.088694937828437 %)
[2026-03-02 16:44:10] 2026-03-02 15:43:24,028 | INFO     | left removable region: 20
[2026-03-02 16:44:10] 2026-03-02 15:43:24,029 | INFO     | sum of square deviations: 1995283922.5
[2026-03-02 16:44:10] 2026-03-02 15:43:24,030 | INFO     | sum of deviations: -4814879937.999999
[2026-03-02 16:44:10] 2026-03-02 15:43:24,030 | INFO     | mean x: 1772460146.5
[2026-03-02 16:44:10] 2026-03-02 15:43:24,030 | INFO     | mean y: 2356481.3870967743
[2026-03-02 16:44:10] 2026-03-02 15:43:24,030 | INFO     | intersect: 4279533630.99017
[2026-03-02 16:44:10] 2026-03-02 15:43:24,030 | INFO     | chi2: 0.025549896745964383
[2026-03-02 16:44:10] 2026-03-02 15:43:24,030 | INFO     | current memory leak: -2.41 B/s (using 186 data points, chi2=0.03)
[2026-03-02 16:44:10] 2026-03-02 15:43:24,031 | INFO     | could have reported an average CPU frequency of 2611 MHz (11 samples)
[2026-03-02 16:44:10] 2026-03-02 15:43:24,031 | INFO     | ..............................
[2026-03-02 16:44:10] 2026-03-02 15:43:24,031 | INFO     | . Timing measurements:
[2026-03-02 16:44:10] 2026-03-02 15:43:24,031 | INFO     | . get job = 0 s
[2026-03-02 16:44:10] 2026-03-02 15:43:24,031 | INFO     | . initial setup = 5 s
[2026-03-02 16:44:10] 2026-03-02 15:43:24,032 | INFO     | . payload setup = 5 s
[2026-03-02 16:44:10] 2026-03-02 15:43:24,032 | INFO     | . stage-in = 0 s
[2026-03-02 16:44:10] 2026-03-02 15:43:24,032 | INFO     | . payload execution = 12914 s
[2026-03-02 16:44:10] 2026-03-02 15:43:24,032 | INFO     | . stage-out = 1 s
[2026-03-02 16:44:10] 2026-03-02 15:43:24,032 | INFO     | . log creation = 0 s
[2026-03-02 16:44:10] 2026-03-02 15:43:24,032 | INFO     | ..............................
[2026-03-02 16:44:10] 2026-03-02 15:43:24,219 | INFO     | 
[2026-03-02 16:44:10] 2026-03-02 15:43:24,220 | INFO     | job summary report
[2026-03-02 16:44:10] 2026-03-02 15:43:24,220 | INFO     | --------------------------------------------------
[2026-03-02 16:44:10] 2026-03-02 15:43:24,220 | INFO     | PanDA job id: 7035124563
[2026-03-02 16:44:10] 2026-03-02 15:43:24,220 | INFO     | task id: 48838577
[2026-03-02 16:44:10] 2026-03-02 15:43:24,220 | INFO     | errors: (none)
[2026-03-02 16:44:10] 2026-03-02 15:43:24,220 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-02 16:44:10] 2026-03-02 15:43:24,220 | INFO     | pilot state: finished 
[2026-03-02 16:44:10] 2026-03-02 15:43:24,220 | INFO     | transexitcode: 0
[2026-03-02 16:44:10] 2026-03-02 15:43:24,220 | INFO     | exeerrorcode: 0
[2026-03-02 16:44:10] 2026-03-02 15:43:24,221 | INFO     | exeerrordiag: 
[2026-03-02 16:44:10] 2026-03-02 15:43:24,221 | INFO     | exitcode: 0
[2026-03-02 16:44:10] 2026-03-02 15:43:24,221 | INFO     | exitmsg: OK
[2026-03-02 16:44:10] 2026-03-02 15:43:24,221 | INFO     | cpuconsumptiontime: 49755 s
[2026-03-02 16:44:10] 2026-03-02 15:43:24,221 | INFO     | nevents: 400
[2026-03-02 16:44:10] 2026-03-02 15:43:24,221 | INFO     | neventsw: 0
[2026-03-02 16:44:10] 2026-03-02 15:43:24,221 | INFO     | pid: 242274
[2026-03-02 16:44:10] 2026-03-02 15:43:24,221 | INFO     | pgrp: 242274
[2026-03-02 16:44:10] 2026-03-02 15:43:24,221 | INFO     | corecount: 4
[2026-03-02 16:44:10] 2026-03-02 15:43:24,221 | INFO     | event service: False
[2026-03-02 16:44:10] 2026-03-02 15:43:24,221 | INFO     | sizes: {0: 2281972, 1: 2282234, 11: 2282262, 12924: 2312291, 12925: 2321311, 12927: 2321367, 12930: 2321689}
[2026-03-02 16:44:10] 2026-03-02 15:43:24,221 | INFO     | --------------------------------------------------
[2026-03-02 16:44:10] 2026-03-02 15:43:24,221 | INFO     | 
[2026-03-02 16:44:10] 2026-03-02 15:43:24,222 | INFO     | executing command: ls -lF /scratch/boinc/var/slot36/slots/0
[2026-03-02 16:44:10] 2026-03-02 15:43:24,243 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-02 16:44:10] 2026-03-02 15:43:24,244 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-02 16:44:10] 2026-03-02 15:43:24,244 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-02 16:44:10] 2026-03-02 15:43:24,244 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-02 16:44:10] 2026-03-02 15:43:24,244 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-02 16:44:10] 2026-03-02 15:43:24,244 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-02 16:44:10] 2026-03-02 15:43:24,244 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-02 16:44:10] 2026-03-02 15:43:24,244 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-02 16:44:10] 2026-03-02 15:43:24,245 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-02 16:44:10] 2026-03-02 15:43:24,245 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-02 16:44:10] 2026-03-02 15:43:24,245 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-02 16:44:10] 2026-03-02 15:43:24,245 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-02 16:44:10] 2026-03-02 15:43:24,245 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-02 16:44:10] 2026-03-02 15:43:24,245 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-02 16:44:10] 2026-03-02 15:43:24,245 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-02 16:44:10] 2026-03-02 15:43:24,245 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-02 16:44:10] 2026-03-02 15:43:24,245 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-02 16:44:10] 2026-03-02 15:43:24,245 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-02 16:44:10] 2026-03-02 15:43:24,245 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-02 16:44:10] 2026-03-02 15:43:24,246 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-02 16:44:10] 2026-03-02 15:43:24,246 | INFO     | job 7035124563 has completed (purged errors)
[2026-03-02 16:44:10] 2026-03-02 15:43:24,246 | INFO     | overall cleanup function is called
[2026-03-02 16:44:10] 2026-03-02 15:43:25,254 | INFO     | --- collectZombieJob: --- 10, [242274]
[2026-03-02 16:44:10] 2026-03-02 15:43:25,254 | INFO     | zombie collector waiting for pid 242274
[2026-03-02 16:44:10] 2026-03-02 15:43:25,254 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-02 16:44:10] 2026-03-02 15:43:25,254 | INFO     | collected zombie processes
[2026-03-02 16:44:10] 2026-03-02 15:43:25,254 | INFO     | will attempt to kill all subprocesses of pid=242274
[2026-03-02 16:44:10] 2026-03-02 15:43:25,591 | INFO     | process IDs to be killed: [242274] (in reverse order)
[2026-03-02 16:44:10] 2026-03-02 15:43:25,710 | WARNING  | found no corresponding commands to process id(s)
[2026-03-02 16:44:10] 2026-03-02 15:43:25,710 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-02 16:44:10] 2026-03-02 15:43:25,720 | INFO     | did not find any defunct processes belonging to 242274
[2026-03-02 16:44:10] 2026-03-02 15:43:25,730 | INFO     | did not find any defunct processes belonging to 242274
[2026-03-02 16:44:10] 2026-03-02 15:43:25,731 | INFO     | ready for new job
[2026-03-02 16:44:10] 2026-03-02 15:43:25,731 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-02 16:44:10] 2026-03-02 15:43:25,733 | INFO     | **************************************
[2026-03-02 16:44:10] 2026-03-02 15:43:25,733 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-02 16:44:10] 2026-03-02 15:43:25,733 | INFO     | **************************************
[2026-03-02 16:44:10] 2026-03-02 15:43:25,734 | INFO     | 
[2026-03-02 16:44:10] 2026-03-02 15:43:25,738 | INFO     | architecture information:
[2026-03-02 16:44:10] 2026-03-02 15:43:25,738 | INFO     | executing command: cat /etc/os-release
[2026-03-02 16:44:10] 2026-03-02 15:43:25,754 | INFO     | cat /etc/os-release:
[2026-03-02 16:44:10] NAME="CentOS Linux"
[2026-03-02 16:44:10] VERSION="7 (Core)"
[2026-03-02 16:44:10] ID="centos"
[2026-03-02 16:44:10] ID_LIKE="rhel fedora"
[2026-03-02 16:44:10] VERSION_ID="7"
[2026-03-02 16:44:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-02 16:44:10] ANSI_COLOR="0;31"
[2026-03-02 16:44:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-02 16:44:10] HOME_URL="https://www.centos.org/"
[2026-03-02 16:44:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-02 16:44:10] 
[2026-03-02 16:44:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-02 16:44:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-02 16:44:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-02 16:44:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-02 16:44:10] 
[2026-03-02 16:44:10] 2026-03-02 15:43:25,754 | INFO     | **************************************
[2026-03-02 16:44:10] 2026-03-02 15:43:26,257 | INFO     | executing command: df -mP /scratch/boinc/var/slot36/slots/0
[2026-03-02 16:44:10] 2026-03-02 15:43:26,275 | INFO     | sufficient remaining disk space (671394824192 B)
[2026-03-02 16:44:10] 2026-03-02 15:43:26,276 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-02 16:44:10] 2026-03-02 15:43:26,276 | INFO     | current server update state: UPDATING_FINAL
[2026-03-02 16:44:10] 2026-03-02 15:43:26,276 | INFO     | update_server=False
[2026-03-02 16:44:10] 2026-03-02 15:43:26,276 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-02 16:44:10] 2026-03-02 15:43:26,276 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-02 16:44:10] 2026-03-02 15:43:26,276 | INFO     | aborting loop
[2026-03-02 16:44:10] 2026-03-02 15:43:26,867 | INFO     | all payload control threads have been joined
[2026-03-02 16:44:10] 2026-03-02 15:43:26,959 | INFO     | all data control threads have been joined
[2026-03-02 16:44:10] 2026-03-02 15:43:27,259 | INFO     | all job control threads have been joined
[2026-03-02 16:44:10] 2026-03-02 15:43:27,278 | INFO     | [job] retrieve thread has finished
[2026-03-02 16:44:10] 2026-03-02 15:43:27,278 | INFO     | [job] job monitor thread has finished
[2026-03-02 16:44:10] 2026-03-02 15:43:27,436 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-02 16:44:10] 2026-03-02 15:43:27,638 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-02 16:44:10] 2026-03-02 15:43:27,727 | INFO     | [data] copytool_in thread has finished
[2026-03-02 16:44:10] 2026-03-02 15:43:27,733 | INFO     | [payload] failed_post thread has finished
[2026-03-02 16:44:10] 2026-03-02 15:43:27,804 | INFO     | [payload] execute_payloads thread has finished
[2026-03-02 16:44:10] 2026-03-02 15:43:27,872 | INFO     | [payload] control thread has finished
[2026-03-02 16:44:10] 2026-03-02 15:43:27,964 | INFO     | [data] control thread has finished
[2026-03-02 16:44:10] 2026-03-02 15:43:28,264 | INFO     | [job] control thread has finished
[2026-03-02 16:44:10] 2026-03-02 15:43:28,493 | INFO     | [payload] validate_post thread has finished
[2026-03-02 16:44:10] 2026-03-02 15:43:28,540 | INFO     | [payload] validate_pre thread has finished
[2026-03-02 16:44:10] 2026-03-02 15:43:28,628 | INFO     | [job] create_data_payload thread has finished
[2026-03-02 16:44:10] 2026-03-02 15:43:28,727 | INFO     | [job] validate thread has finished
[2026-03-02 16:44:10] 2026-03-02 15:43:29,131 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-02 16:44:10] 2026-03-02 15:43:29,441 | INFO     | [data] copytool_out thread has finished
[2026-03-02 16:44:10] 2026-03-02 15:43:30,136 | INFO     | [job] queue monitor thread has finished
[2026-03-02 16:44:10] 2026-03-02 15:43:31,644 | INFO     | [data] queue_monitor thread has finished
[2026-03-02 16:44:10] 2026-03-02 15:43:36,507 | INFO     | job.realtimelogging is not enabled
[2026-03-02 16:44:10] 2026-03-02 15:43:37,512 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-02 16:44:10] 2026-03-02 15:43:55,870 | INFO     | PID=237485 has CPU usage=7.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-02 16:44:10] 2026-03-02 15:43:55,870 | INFO     | .. there are 12 such processes running
[2026-03-02 16:44:10] 2026-03-02 15:43:55,871 | INFO     | found 0 job(s) in 20 queues
[2026-03-02 16:44:10] 2026-03-02 15:43:55,871 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-02 16:44:10] 2026-03-02 15:43:55,871 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-02 16:44:10] 2026-03-02 15:44:03,829 | INFO     | [monitor] cgroup control has ended
[2026-03-02 16:44:10] 2026-03-02 15:44:04,834 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23281295124288)>', '<ExcThread(monitor, started 23281058199296)>']
[2026-03-02 16:44:10] 2026-03-02 15:44:04,908 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-02 16:44:10] 2026-03-02 15:44:04,908 | INFO     | [monitor] control thread has ended
[2026-03-02 16:44:10] 2026-03-02 15:44:09,856 | INFO     | all workflow threads have been joined
[2026-03-02 16:44:10] 2026-03-02 15:44:09,856 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-02 16:44:10] 2026-03-02 15:44:09,857 | INFO     | traces error code: 0
[2026-03-02 16:44:10] 2026-03-02 15:44:09,857 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-02 16:44:10] 2026-03-02 15:44:10,000 [wrapper] ==== pilot stdout END ====
[2026-03-02 16:44:10] 2026-03-02 15:44:10,003 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-02 16:44:10] 2026-03-02 15:44:10,005 [wrapper] pilotpid: 237485
[2026-03-02 16:44:10] 2026-03-02 15:44:10,008 [wrapper] Pilot exit status: 0
[2026-03-02 16:44:10] 2026-03-02 15:44:10,018 [wrapper] pandaids: 7035124563
[2026-03-02 16:44:10] 2026-03-02 15:44:10,090 [wrapper] cleanup supervisor_pilot  471316 237486
[2026-03-02 16:44:10] 2026-03-02 15:44:10,093 [wrapper] Test setup, not cleaning
[2026-03-02 16:44:10] 2026-03-02 15:44:10,096 [wrapper] apfmon messages muted
[2026-03-02 16:44:10] 2026-03-02 15:44:10,100 [wrapper] ==== wrapper stdout END ====
[2026-03-02 16:44:10] 2026-03-02 15:44:10,103 [wrapper] ==== wrapper stderr END ====
[2026-03-02 16:44:10]  *** Error codes and diagnostics ***
[2026-03-02 16:44:10]     "exeErrorCode": 0,
[2026-03-02 16:44:10]     "exeErrorDiag": "",
[2026-03-02 16:44:10]     "pilotErrorCode": 0,
[2026-03-02 16:44:10]     "pilotErrorDiag": "",
[2026-03-02 16:44:10]  *** Listing of results directory ***
[2026-03-02 16:44:10] total 511308
[2026-03-02 16:44:10] -rw-r--r-- 1 boinc boinc    584627 Mar  1 16:13 pilot3.tar.gz
[2026-03-02 16:44:10] -rwx------ 1 boinc boinc     36322 Mar  1 16:14 runpilot2-wrapper.sh
[2026-03-02 16:44:10] -rw-r--r-- 1 boinc boinc      5111 Mar  1 16:15 queuedata.json
[2026-03-02 16:44:10] -rw-r--r-- 1 boinc boinc       100 Mar  2 13:07 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-02 16:44:10] -rwxr-xr-x 1 boinc boinc      7986 Mar  2 13:07 run_atlas
[2026-03-02 16:44:10] -rw-r--r-- 1 boinc boinc       105 Mar  2 13:07 job.xml
[2026-03-02 16:44:10] -rw-r--r-- 1 boinc boinc      6640 Mar  2 13:07 init_data.xml
[2026-03-02 16:44:10] -rw-r--r-- 2 boinc boinc 292841421 Mar  2 13:07 EVNT.48220197._000015.pool.root.1
[2026-03-02 16:44:10] -rw-r--r-- 2 boinc boinc     15845 Mar  2 13:07 start_atlas.sh
[2026-03-02 16:44:10] drwxrwx--x 2 boinc boinc      4096 Mar  2 13:07 shared
[2026-03-02 16:44:10] -rw-r--r-- 2 boinc boinc    597980 Mar  2 13:07 input.tar.gz
[2026-03-02 16:44:10] -rw-r--r-- 1 boinc boinc         0 Mar  2 13:07 boinc_lockfile
[2026-03-02 16:44:10] -rw-r--r-- 1 boinc boinc      2564 Mar  2 13:07 pandaJob.out
[2026-03-02 16:44:10] -rw------- 1 boinc boinc    998151 Mar  2 13:07 agis_schedconf.cvmfs.json
[2026-03-02 16:44:10] -rw------- 1 boinc boinc       452 Mar  2 13:07 workernode_map.json
[2026-03-02 16:44:10] drwx------ 5 boinc boinc      4096 Mar  2 13:07 pilot3
[2026-03-02 16:44:10] -rw------- 1 boinc boinc 222361698 Mar  2 16:42 HITS.48838577._002345.pool.root.1
[2026-03-02 16:44:10] -rw-r--r-- 1 boinc boinc       530 Mar  2 16:43 boinc_task_state.xml
[2026-03-02 16:44:10] -rw------- 1 boinc boinc      1033 Mar  2 16:43 memory_monitor_summary.json
[2026-03-02 16:44:10] -rw------- 1 boinc boinc   1512931 Mar  2 16:43 agis_ddmendpoints.agis.ALL.json
[2026-03-02 16:44:10] -rw------- 1 boinc boinc    389733 Mar  2 16:43 log.48838577._002345.job.log.tgz.1
[2026-03-02 16:44:10] -rw------- 1 boinc boinc      6398 Mar  2 16:43 heartbeat.json
[2026-03-02 16:44:10] -rw------- 1 boinc boinc        95 Mar  2 16:43 pilot_heartbeat.json
[2026-03-02 16:44:10] -rw-r--r-- 1 boinc boinc      8192 Mar  2 16:44 boinc_mmap_file
[2026-03-02 16:44:10] -rw-r--r-- 1 boinc boinc        28 Mar  2 16:44 wrapper_checkpoint.txt
[2026-03-02 16:44:10] -rw------- 1 boinc boinc      4901 Mar  2 16:44 pilotlog.txt
[2026-03-02 16:44:10] -rw------- 1 boinc boinc   1830508 Mar  2 16:44 log.48838577._002345.job.log.1
[2026-03-02 16:44:10] -rw------- 1 boinc boinc       357 Mar  2 16:44 output.list
[2026-03-02 16:44:10] -rw-r--r-- 1 boinc boinc       620 Mar  2 16:44 runtime_log
[2026-03-02 16:44:10] -rw------- 1 boinc boinc   2242560 Mar  2 16:44 result.tar.gz
[2026-03-02 16:44:10] -rw------- 1 boinc boinc       666 Mar  2 16:44 yxhMDm5fxG9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmmsALDm5vydyn.diag
[2026-03-02 16:44:10] -rw-r--r-- 1 boinc boinc      9205 Mar  2 16:44 runtime_log.err
[2026-03-02 16:44:10] -rw-r--r-- 1 boinc boinc     21130 Mar  2 16:44 stderr.txt
[2026-03-02 16:44:10] HITS file was successfully produced:
[2026-03-02 16:44:10] -rw------- 1 boinc boinc 222361698 Mar  2 16:42 shared/HITS.pool.root.1
[2026-03-02 16:44:10]  *** Contents of shared directory: ***
[2026-03-02 16:44:10] total 505932
[2026-03-02 16:44:10] -rw-r--r-- 2 boinc boinc 292841421 Mar  2 13:07 ATLAS.root_0
[2026-03-02 16:44:10] -rw-r--r-- 2 boinc boinc     15845 Mar  2 13:07 start_atlas.sh
[2026-03-02 16:44:10] -rw-r--r-- 2 boinc boinc    597980 Mar  2 13:07 input.tar.gz
[2026-03-02 16:44:10] -rw------- 1 boinc boinc 222361698 Mar  2 16:42 HITS.pool.root.1
[2026-03-02 16:44:10] -rw------- 1 boinc boinc   2242560 Mar  2 16:44 result.tar.gz
16:44:11 (233371): run_atlas exited; CPU time 50220.525397
16:44:11 (233371): called boinc_finish(0)

</stderr_txt>
]]>

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