Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:51:16 (3094229): wrapper (7.7.26015): starting
01:51:16 (3094229): wrapper: running run_atlas (--nthreads 4)
[2026-03-02 01:51:16] Arguments: --nthreads 4
[2026-03-02 01:51:16] Threads: 4
[2026-03-02 01:51:16] Checking for CVMFS
[2026-03-02 01:51:16] No cvmfs_config command found, will try listing directly
[2026-03-02 01:51:16] CVMFS is ok
[2026-03-02 01:51:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-02 01:51:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-02 01:51:16] Further information can be found at the LHC@home message board.
[2026-03-02 01:51:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-02 01:51:16] Checking for apptainer binary...
[2026-03-02 01:51:16] which: no apptainer in ((null))
[2026-03-02 01:51:16] apptainer is not installed, using version from CVMFS
[2026-03-02 01:51:16] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-02 01:51:16] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot76/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut19.grid.cesnet.cz
[2026-03-02 01:51:16] apptainer works
[2026-03-02 01:51:16] Set ATHENA_PROC_NUMBER=4
[2026-03-02 01:51:16] Set ATHENA_CORE_NUMBER=4
[2026-03-02 01:51:16] Starting ATLAS job with PandaID=7035002906
[2026-03-02 01:51:16] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot76/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-02 02:59:41]  *** The last 200 lines of the pilot log: ***
[2026-03-02 02:59:41] 2026-03-02 01:58:46,941 | INFO     | adding to output.list: log.48700906._001951.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f1/33/log.48700906._001951.job.log.tg
[2026-03-02 02:59:41] 2026-03-02 01:58:46,942 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-02 02:59:41] 2026-03-02 01:58:46,942 | INFO     | summary of transferred files:
[2026-03-02 02:59:41] 2026-03-02 01:58:46,942 | INFO     |  -- lfn=log.48700906._001951.job.log.tgz.1, status_code=0, status=transferred
[2026-03-02 02:59:41] 2026-03-02 01:58:46,943 | INFO     | stage-out finished correctly
[2026-03-02 02:59:41] 2026-03-02 01:58:47,323 | WARNING  | process 3114402 can no longer be monitored (due to stat problems) - aborting
[2026-03-02 02:59:41] 2026-03-02 01:58:47,323 | INFO     | using path: /var/lib/boinc/var/slot76/slots/0/PanDA_Pilot-7035002906/memory_monitor_summary.json (trf name=prmon)
[2026-03-02 02:59:41] 2026-03-02 01:58:47,324 | INFO     | using path: /var/lib/boinc/var/slot76/slots/0/PanDA_Pilot-7035002906/memory_monitor_summary.json (trf name=prmon)
[2026-03-02 02:59:41] 2026-03-02 01:58:47,324 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-02 02:59:41] 2026-03-02 01:58:47,324 | WARNING  | maxPSS not found in memory monitor output
[2026-03-02 02:59:41] 2026-03-02 01:58:47,324 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 1916020 B
[2026-03-02 02:59:41] 2026-03-02 01:58:47,324 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15600 B
[2026-03-02 02:59:41] 2026-03-02 01:58:47,324 | INFO     | executing command: df -mP /var/lib/boinc/var/slot76/slots/0
[2026-03-02 02:59:41] 2026-03-02 01:58:47,336 | INFO     | sufficient remaining disk space (20974665728 B)
[2026-03-02 02:59:41] 2026-03-02 01:58:47,336 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-03-02 02:59:41] 2026-03-02 01:58:47,337 | INFO     | size of work directory /var/lib/boinc/var/slot76/slots/0/PanDA_Pilot-7035002906: 2210537 B (within 5033164800 B limit)
[2026-03-02 02:59:41] 2026-03-02 01:58:47,337 | INFO     | pfn file=/var/lib/boinc/var/slot76/slots/0/PanDA_Pilot-7035002906/HITS.48700906._001951.pool.root.1 does not exist (skip from workdir size calculation)
[2026-03-02 02:59:41] 2026-03-02 01:58:47,337 | INFO     | total size of present files: 0 B (workdir size: 2210537 B)
[2026-03-02 02:59:41] 2026-03-02 01:58:47,337 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot76/slots/0/PanDA_Pilot-7035002906/HITS.48700906._001951.pool.root.1 since it does not exist
[2026-03-02 02:59:41] 2026-03-02 01:58:47,750 | INFO     | time since job start (4037s) is within the limit (349056.0s)
[2026-03-02 02:59:41] 2026-03-02 01:58:47,791 | INFO     | number of running child processes to parent process 3114402: 1
[2026-03-02 02:59:41] 2026-03-02 01:58:47,792 | INFO     | maximum number of monitored processes: 6
[2026-03-02 02:59:41] 2026-03-02 01:58:49,755 | INFO     | time since job start (4039s) is within the limit (349056.0s)
[2026-03-02 02:59:41] 2026-03-02 01:58:50,119 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-02 02:59:41] 2026-03-02 01:58:50,294 | INFO     | monitor loop #293: job 0:7035002906 is in state 'finished'
[2026-03-02 02:59:41] 2026-03-02 01:58:50,294 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-02 02:59:41] 2026-03-02 01:58:51,760 | INFO     | time since job start (4041s) is within the limit (349056.0s)
[2026-03-02 02:59:41] 2026-03-02 01:58:52,797 | INFO     | monitor loop #294: job 0:7035002906 is in state 'finished'
[2026-03-02 02:59:41] 2026-03-02 01:58:52,797 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-02 02:59:41] 2026-03-02 01:58:52,973 | INFO     | job 7035002906 has state=finished
[2026-03-02 02:59:41] 2026-03-02 01:58:52,973 | INFO     | preparing for final server update for job 7035002906 in state='finished'
[2026-03-02 02:59:41] 2026-03-02 01:58:52,973 | INFO     | reading metadata from: /var/lib/boinc/var/slot76/slots/0/PanDA_Pilot-7035002906/jobReport.json
[2026-03-02 02:59:41] 2026-03-02 01:58:52,975 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot76/slots/0/workernode_map.json
[2026-03-02 02:59:41] 2026-03-02 01:58:52,975 | INFO     | this job has now completed (state=finished)
[2026-03-02 02:59:41] 2026-03-02 01:58:52,975 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-02 02:59:41] 2026-03-02 01:58:52,975 | INFO     | log transfer has been attempted: DONE
[2026-03-02 02:59:41] 2026-03-02 01:58:52,975 | INFO     | job 7035002906 has finished - writing final server update
[2026-03-02 02:59:41] 2026-03-02 01:58:52,976 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_201508/.job.ad'
[2026-03-02 02:59:41] 2026-03-02 01:58:52,976 | INFO     | total number of processed events: 400 (read)
[2026-03-02 02:59:41] 2026-03-02 01:58:52,994 | INFO     | using path: /var/lib/boinc/var/slot76/slots/0/PanDA_Pilot-7035002906/memory_monitor_summary.json (trf name=prmon)
[2026-03-02 02:59:41] 2026-03-02 01:58:52,994 | INFO     | extracted standard info from prmon json
[2026-03-02 02:59:41] 2026-03-02 01:58:52,994 | INFO     | extracted standard memory fields from prmon json
[2026-03-02 02:59:41] 2026-03-02 01:58:52,994 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-02 02:59:41] 2026-03-02 01:58:52,994 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-02 02:59:41] 2026-03-02 01:58:52,994 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-02 02:59:41] 2026-03-02 01:58:52,995 | INFO     | fitting pss+swap vs Time
[2026-03-02 02:59:41] 2026-03-02 01:58:52,995 | INFO     | sum of square deviations: 63666310.0
[2026-03-02 02:59:41] 2026-03-02 01:58:52,996 | INFO     | sum of deviations: -228197035.0
[2026-03-02 02:59:41] 2026-03-02 01:58:52,996 | INFO     | mean x: 1772414786.0
[2026-03-02 02:59:41] 2026-03-02 01:58:52,996 | INFO     | mean y: 2320616.5084745763
[2026-03-02 02:59:41] 2026-03-02 01:58:52,996 | INFO     | intersect: 6355127916.87439
[2026-03-02 02:59:41] 2026-03-02 01:58:52,996 | INFO     | chi2: 0.00021988265136046708
[2026-03-02 02:59:41] 2026-03-02 01:58:52,996 | INFO     | current memory leak: -3.58 B/s (using 59 data points, chi2=0.00)
[2026-03-02 02:59:41] 2026-03-02 01:58:52,996 | INFO     | could have reported an average CPU frequency of 3553 MHz (6 samples)
[2026-03-02 02:59:41] 2026-03-02 01:58:52,996 | INFO     | ..............................
[2026-03-02 02:59:41] 2026-03-02 01:58:52,996 | INFO     | . Timing measurements:
[2026-03-02 02:59:41] 2026-03-02 01:58:52,996 | INFO     | . get job = 0 s
[2026-03-02 02:59:41] 2026-03-02 01:58:52,996 | INFO     | . initial setup = 5 s
[2026-03-02 02:59:41] 2026-03-02 01:58:52,996 | INFO     | . payload setup = 5 s
[2026-03-02 02:59:41] 2026-03-02 01:58:52,996 | INFO     | . stage-in = 0 s
[2026-03-02 02:59:41] 2026-03-02 01:58:52,996 | INFO     | . payload execution = 4015 s
[2026-03-02 02:59:41] 2026-03-02 01:58:52,996 | INFO     | . stage-out = 0 s
[2026-03-02 02:59:41] 2026-03-02 01:58:52,996 | INFO     | . log creation = 0 s
[2026-03-02 02:59:41] 2026-03-02 01:58:52,996 | INFO     | ..............................
[2026-03-02 02:59:41] 2026-03-02 01:58:53,046 | INFO     | 
[2026-03-02 02:59:41] 2026-03-02 01:58:53,046 | INFO     | job summary report
[2026-03-02 02:59:41] 2026-03-02 01:58:53,046 | INFO     | --------------------------------------------------
[2026-03-02 02:59:41] 2026-03-02 01:58:53,046 | INFO     | PanDA job id: 7035002906
[2026-03-02 02:59:41] 2026-03-02 01:58:53,046 | INFO     | task id: 48700906
[2026-03-02 02:59:41] 2026-03-02 01:58:53,046 | INFO     | errors: (none)
[2026-03-02 02:59:41] 2026-03-02 01:58:53,046 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-02 02:59:41] 2026-03-02 01:58:53,046 | INFO     | pilot state: finished 
[2026-03-02 02:59:41] 2026-03-02 01:58:53,046 | INFO     | transexitcode: 0
[2026-03-02 02:59:41] 2026-03-02 01:58:53,046 | INFO     | exeerrorcode: 0
[2026-03-02 02:59:41] 2026-03-02 01:58:53,046 | INFO     | exeerrordiag: 
[2026-03-02 02:59:41] 2026-03-02 01:58:53,046 | INFO     | exitcode: 0
[2026-03-02 02:59:41] 2026-03-02 01:58:53,046 | INFO     | exitmsg: OK
[2026-03-02 02:59:41] 2026-03-02 01:58:53,046 | INFO     | cpuconsumptiontime: 15187 s
[2026-03-02 02:59:41] 2026-03-02 01:58:53,046 | INFO     | nevents: 400
[2026-03-02 02:59:41] 2026-03-02 01:58:53,047 | INFO     | neventsw: 0
[2026-03-02 02:59:41] 2026-03-02 01:58:53,047 | INFO     | pid: 3114402
[2026-03-02 02:59:41] 2026-03-02 01:58:53,047 | INFO     | pgrp: 3114402
[2026-03-02 02:59:41] 2026-03-02 01:58:53,047 | INFO     | corecount: 4
[2026-03-02 02:59:41] 2026-03-02 01:58:53,047 | INFO     | event service: False
[2026-03-02 02:59:41] 2026-03-02 01:58:53,047 | INFO     | sizes: {0: 2282167, 11: 2282167, 4024: 2308051, 4026: 2317071, 4029: 2317155, 4032: 2317349}
[2026-03-02 02:59:41] 2026-03-02 01:58:53,047 | INFO     | --------------------------------------------------
[2026-03-02 02:59:41] 2026-03-02 01:58:53,047 | INFO     | 
[2026-03-02 02:59:41] 2026-03-02 01:58:53,047 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot76/slots/0
[2026-03-02 02:59:41] 2026-03-02 01:58:53,068 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-02 02:59:41] 2026-03-02 01:58:53,069 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-02 02:59:41] 2026-03-02 01:58:53,069 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-02 02:59:41] 2026-03-02 01:58:53,069 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-02 02:59:41] 2026-03-02 01:58:53,069 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-02 02:59:41] 2026-03-02 01:58:53,069 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-02 02:59:41] 2026-03-02 01:58:53,069 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-02 02:59:41] 2026-03-02 01:58:53,069 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-02 02:59:41] 2026-03-02 01:58:53,069 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-02 02:59:41] 2026-03-02 01:58:53,069 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-02 02:59:41] 2026-03-02 01:58:53,069 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-02 02:59:41] 2026-03-02 01:58:53,069 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-02 02:59:41] 2026-03-02 01:58:53,069 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-02 02:59:41] 2026-03-02 01:58:53,069 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-02 02:59:41] 2026-03-02 01:58:53,069 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-02 02:59:41] 2026-03-02 01:58:53,069 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-02 02:59:41] 2026-03-02 01:58:53,069 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-02 02:59:41] 2026-03-02 01:58:53,069 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-02 02:59:41] 2026-03-02 01:58:53,069 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-02 02:59:41] 2026-03-02 01:58:53,069 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-02 02:59:41] 2026-03-02 01:58:53,069 | INFO     | job 7035002906 has completed (purged errors)
[2026-03-02 02:59:41] 2026-03-02 01:58:53,072 | INFO     | overall cleanup function is called
[2026-03-02 02:59:41] 2026-03-02 01:58:54,079 | INFO     | --- collectZombieJob: --- 10, [3114402]
[2026-03-02 02:59:41] 2026-03-02 01:58:54,079 | INFO     | zombie collector waiting for pid 3114402
[2026-03-02 02:59:41] 2026-03-02 01:58:54,079 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-02 02:59:41] 2026-03-02 01:58:54,079 | INFO     | collected zombie processes
[2026-03-02 02:59:41] 2026-03-02 01:58:54,079 | INFO     | will attempt to kill all subprocesses of pid=3114402
[2026-03-02 02:59:41] 2026-03-02 01:58:54,524 | INFO     | process IDs to be killed: [3114402] (in reverse order)
[2026-03-02 02:59:41] 2026-03-02 01:58:54,731 | WARNING  | found no corresponding commands to process id(s)
[2026-03-02 02:59:41] 2026-03-02 01:58:54,731 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-02 02:59:41] 2026-03-02 01:58:54,762 | INFO     | did not find any defunct processes belonging to 3114402
[2026-03-02 02:59:41] 2026-03-02 01:58:54,791 | INFO     | did not find any defunct processes belonging to 3114402
[2026-03-02 02:59:41] 2026-03-02 01:58:54,792 | INFO     | ready for new job
[2026-03-02 02:59:41] 2026-03-02 01:58:54,792 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-02 02:59:41] 2026-03-02 01:58:54,793 | INFO     | **************************************
[2026-03-02 02:59:41] 2026-03-02 01:58:54,793 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-02 02:59:41] 2026-03-02 01:58:54,793 | INFO     | **************************************
[2026-03-02 02:59:41] 2026-03-02 01:58:54,793 | INFO     | 
[2026-03-02 02:59:41] 2026-03-02 01:58:54,800 | INFO     | architecture information:
[2026-03-02 02:59:41] 2026-03-02 01:58:54,800 | INFO     | executing command: cat /etc/os-release
[2026-03-02 02:59:41] 2026-03-02 01:58:54,814 | INFO     | cat /etc/os-release:
[2026-03-02 02:59:41] NAME="CentOS Linux"
[2026-03-02 02:59:41] VERSION="7 (Core)"
[2026-03-02 02:59:41] ID="centos"
[2026-03-02 02:59:41] ID_LIKE="rhel fedora"
[2026-03-02 02:59:41] VERSION_ID="7"
[2026-03-02 02:59:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-02 02:59:41] ANSI_COLOR="0;31"
[2026-03-02 02:59:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-02 02:59:41] HOME_URL="https://www.centos.org/"
[2026-03-02 02:59:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-02 02:59:41] 
[2026-03-02 02:59:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-02 02:59:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-02 02:59:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-02 02:59:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-02 02:59:41] 
[2026-03-02 02:59:41] 2026-03-02 01:58:54,814 | INFO     | **************************************
[2026-03-02 02:59:41] 2026-03-02 01:58:55,317 | INFO     | executing command: df -mP /var/lib/boinc/var/slot76/slots/0
[2026-03-02 02:59:41] 2026-03-02 01:58:55,331 | INFO     | sufficient remaining disk space (20833107968 B)
[2026-03-02 02:59:41] 2026-03-02 01:58:55,331 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-02 02:59:41] 2026-03-02 01:58:55,331 | INFO     | current server update state: UPDATING_FINAL
[2026-03-02 02:59:41] 2026-03-02 01:58:55,331 | INFO     | update_server=False
[2026-03-02 02:59:41] 2026-03-02 01:58:55,331 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-02 02:59:41] 2026-03-02 01:58:55,331 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-02 02:59:41] 2026-03-02 01:58:55,380 | INFO     | all data control threads have been joined
[2026-03-02 02:59:41] 2026-03-02 01:58:56,162 | INFO     | all payload control threads have been joined
[2026-03-02 02:59:41] 2026-03-02 01:58:56,177 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-02 02:59:41] 2026-03-02 01:58:56,305 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-02 02:59:41] 2026-03-02 01:58:56,305 | INFO     | aborting loop
[2026-03-02 02:59:41] 2026-03-02 01:58:56,334 | INFO     | [job] retrieve thread has finished
[2026-03-02 02:59:41] 2026-03-02 01:58:56,385 | INFO     | [data] control thread has finished
[2026-03-02 02:59:41] 2026-03-02 01:58:56,389 | INFO     | [job] validate thread has finished
[2026-03-02 02:59:41] 2026-03-02 01:58:56,578 | INFO     | all job control threads have been joined
[2026-03-02 02:59:41] 2026-03-02 01:58:56,736 | INFO     | [payload] execute_payloads thread has finished
[2026-03-02 02:59:41] 2026-03-02 01:58:56,736 | INFO     | [job] create_data_payload thread has finished
[2026-03-02 02:59:41] 2026-03-02 01:58:56,803 | INFO     | [payload] validate_pre thread has finished
[2026-03-02 02:59:41] 2026-03-02 01:58:57,057 | INFO     | [payload] failed_post thread has finished
[2026-03-02 02:59:41] 2026-03-02 01:58:57,110 | INFO     | [data] copytool_in thread has finished
[2026-03-02 02:59:41] 2026-03-02 01:58:57,167 | INFO     | [payload] control thread has finished
[2026-03-02 02:59:41] 2026-03-02 01:58:57,310 | INFO     | [job] job monitor thread has finished
[2026-03-02 02:59:41] 2026-03-02 01:58:57,337 | INFO     | [data] copytool_out thread has finished
[2026-03-02 02:59:41] 2026-03-02 01:58:57,493 | INFO     | [payload] validate_post thread has finished
[2026-03-02 02:59:41] 2026-03-02 01:58:57,583 | INFO     | [job] control thread has finished
[2026-03-02 02:59:41] 2026-03-02 01:58:58,057 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-02 02:59:41] 2026-03-02 01:58:59,062 | INFO     | [job] queue monitor thread has finished
[2026-03-02 02:59:41] 2026-03-02 01:59:00,182 | INFO     | [data] queue_monitor thread has finished
[2026-03-02 02:59:41] 2026-03-02 01:59:05,677 | INFO     | job.realtimelogging is not enabled
[2026-03-02 02:59:41] 2026-03-02 01:59:06,682 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-02 02:59:41] 2026-03-02 01:59:25,384 | INFO     | PID=3103093 has CPU usage=7.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-02 02:59:41] 2026-03-02 01:59:25,384 | INFO     | .. there are 46 such processes running
[2026-03-02 02:59:41] 2026-03-02 01:59:25,384 | INFO     | found 0 job(s) in 20 queues
[2026-03-02 02:59:41] 2026-03-02 01:59:25,384 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-02 02:59:41] 2026-03-02 01:59:25,384 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-02 02:59:41] 2026-03-02 01:59:36,135 | INFO     | [monitor] cgroup control has ended
[2026-03-02 02:59:41] 2026-03-02 01:59:36,355 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22768476755776)>', '<ExcThread(monitor, started 22768235321088)>']
[2026-03-02 02:59:41] 2026-03-02 01:59:36,439 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-02 02:59:41] 2026-03-02 01:59:36,439 | INFO     | [monitor] control thread has ended
[2026-03-02 02:59:41] 2026-03-02 01:59:41,381 | INFO     | all workflow threads have been joined
[2026-03-02 02:59:41] 2026-03-02 01:59:41,381 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-02 02:59:41] 2026-03-02 01:59:41,381 | INFO     | traces error code: 0
[2026-03-02 02:59:41] 2026-03-02 01:59:41,381 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-02 02:59:41] 2026-03-02 01:59:41,522 [wrapper] ==== pilot stdout END ====
[2026-03-02 02:59:41] 2026-03-02 01:59:41,525 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-02 02:59:41] 2026-03-02 01:59:41,527 [wrapper] pilotpid: 3103093
[2026-03-02 02:59:41] 2026-03-02 01:59:41,530 [wrapper] Pilot exit status: 0
[2026-03-02 02:59:41] 2026-03-02 01:59:41,539 [wrapper] pandaids: 7035002906
[2026-03-02 02:59:41] 2026-03-02 01:59:41,672 [wrapper] cleanup supervisor_pilot 3664934 3103094
[2026-03-02 02:59:41] 2026-03-02 01:59:41,674 [wrapper] Test setup, not cleaning
[2026-03-02 02:59:41] 2026-03-02 01:59:41,676 [wrapper] apfmon messages muted
[2026-03-02 02:59:41] 2026-03-02 01:59:41,678 [wrapper] ==== wrapper stdout END ====
[2026-03-02 02:59:41] 2026-03-02 01:59:41,679 [wrapper] ==== wrapper stderr END ====
[2026-03-02 02:59:41]  *** Error codes and diagnostics ***
[2026-03-02 02:59:41]     "exeErrorCode": 0,
[2026-03-02 02:59:41]     "exeErrorDiag": "",
[2026-03-02 02:59:41]     "pilotErrorCode": 0,
[2026-03-02 02:59:41]     "pilotErrorDiag": "",
[2026-03-02 02:59:41]  *** Listing of results directory ***
[2026-03-02 02:59:41] total 334052
[2026-03-02 02:59:41] -rwx------. 1 boinc boinc     36322 Mar  1 13:55 runpilot2-wrapper.sh
[2026-03-02 02:59:41] -rw-r--r--. 1 boinc boinc      5111 Mar  1 13:55 queuedata.json
[2026-03-02 02:59:41] -rw-r--r--. 1 boinc boinc    584627 Mar  1 13:55 pilot3.tar.gz
[2026-03-02 02:59:41] -rw-r--r--. 1 boinc boinc       100 Mar  2 01:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-02 02:59:41] -rwxr-xr-x. 1 boinc boinc      7986 Mar  2 01:51 run_atlas
[2026-03-02 02:59:41] -rw-r--r--. 1 boinc boinc       105 Mar  2 01:51 job.xml
[2026-03-02 02:59:41] -rw-r--r--. 2 boinc boinc 187599533 Mar  2 01:51 EVNT.48700904._000084.pool.root.1
[2026-03-02 02:59:41] -rw-r--r--. 2 boinc boinc     15845 Mar  2 01:51 start_atlas.sh
[2026-03-02 02:59:41] drwxrwx--x. 2 boinc boinc      4096 Mar  2 01:51 shared
[2026-03-02 02:59:41] -rw-r--r--. 2 boinc boinc    597932 Mar  2 01:51 input.tar.gz
[2026-03-02 02:59:41] -rw-r--r--. 1 boinc boinc      6704 Mar  2 01:51 init_data.xml
[2026-03-02 02:59:41] -rw-r--r--. 1 boinc boinc         0 Mar  2 01:51 boinc_lockfile
[2026-03-02 02:59:41] -rw-r--r--. 1 boinc boinc      2516 Mar  2 01:51 pandaJob.out
[2026-03-02 02:59:41] -rw-------. 1 boinc boinc    998184 Mar  2 01:51 agis_schedconf.cvmfs.json
[2026-03-02 02:59:41] -rw-------. 1 boinc boinc   1513015 Mar  2 01:51 agis_ddmendpoints.agis.ALL.json
[2026-03-02 02:59:41] -rw-------. 1 boinc boinc       444 Mar  2 01:51 workernode_map.json
[2026-03-02 02:59:41] drwx------. 5 boinc boinc      4096 Mar  2 01:51 pilot3
[2026-03-02 02:59:41] -rw-------. 1 boinc boinc 148861004 Mar  2 02:58 HITS.48700906._001951.pool.root.1
[2026-03-02 02:59:41] -rw-r--r--. 1 boinc boinc       529 Mar  2 02:58 boinc_task_state.xml
[2026-03-02 02:59:41] -rw-------. 1 boinc boinc        95 Mar  2 02:58 pilot_heartbeat.json
[2026-03-02 02:59:41] -rw-------. 1 boinc boinc      1029 Mar  2 02:58 memory_monitor_summary.json
[2026-03-02 02:59:41] -rw-------. 1 boinc boinc    240681 Mar  2 02:58 log.48700906._001951.job.log.tgz.1
[2026-03-02 02:59:41] -rw-------. 1 boinc boinc      6342 Mar  2 02:58 heartbeat.json
[2026-03-02 02:59:41] -rw-r--r--. 1 boinc boinc        27 Mar  2 02:59 wrapper_checkpoint.txt
[2026-03-02 02:59:41] -rw-r--r--. 1 boinc boinc      8192 Mar  2 02:59 boinc_mmap_file
[2026-03-02 02:59:41] -rw-------. 1 boinc boinc      4901 Mar  2 02:59 pilotlog.txt
[2026-03-02 02:59:41] -rw-------. 1 boinc boinc    601485 Mar  2 02:59 log.48700906._001951.job.log.1
[2026-03-02 02:59:41] -rw-------. 1 boinc boinc       357 Mar  2 02:59 output.list
[2026-03-02 02:59:41] -rw-r--r--. 1 boinc boinc       620 Mar  2 02:59 runtime_log
[2026-03-02 02:59:41] -rw-------. 1 boinc boinc    860160 Mar  2 02:59 result.tar.gz
[2026-03-02 02:59:41] -rw-r--r--. 1 boinc boinc      9204 Mar  2 02:59 runtime_log.err
[2026-03-02 02:59:41] -rw-------. 1 boinc boinc       663 Mar  2 02:59 iYXNDmEVvG9n9Rq4apOajLDm4fhM0noT9bVooX4SDm7O8KDmsKG36n.diag
[2026-03-02 02:59:41] -rw-r--r--. 1 boinc boinc     22488 Mar  2 02:59 stderr.txt
[2026-03-02 02:59:41] HITS file was successfully produced:
[2026-03-02 02:59:41] -rw-------. 1 boinc boinc 148861004 Mar  2 02:58 shared/HITS.pool.root.1
[2026-03-02 02:59:41]  *** Contents of shared directory: ***
[2026-03-02 02:59:41] total 330024
[2026-03-02 02:59:41] -rw-r--r--. 2 boinc boinc 187599533 Mar  2 01:51 ATLAS.root_0
[2026-03-02 02:59:41] -rw-r--r--. 2 boinc boinc     15845 Mar  2 01:51 start_atlas.sh
[2026-03-02 02:59:41] -rw-r--r--. 2 boinc boinc    597932 Mar  2 01:51 input.tar.gz
[2026-03-02 02:59:41] -rw-------. 1 boinc boinc 148861004 Mar  2 02:58 HITS.pool.root.1
[2026-03-02 02:59:41] -rw-------. 1 boinc boinc    860160 Mar  2 02:59 result.tar.gz
02:59:43 (3094229): run_atlas exited; CPU time 15362.999209
02:59:43 (3094229): called boinc_finish(0)

</stderr_txt>
]]>

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