Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:25:29 (59807): wrapper (7.7.26015): starting
01:25:29 (59807): wrapper: running run_atlas (--nthreads 4)
[2026-03-02 01:25:29] Arguments: --nthreads 4
[2026-03-02 01:25:29] Threads: 4
[2026-03-02 01:25:29] Checking for CVMFS
[2026-03-02 01:25:30] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-02 01:25:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-02 01:25:30] Running cvmfs_config stat atlas.cern.ch
[2026-03-02 01:25:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-02 01:25:30] 2.9.2.0 3007 282 64436 156789 2 49 27888644 36864000 0 130560 0 158916 99.986 12210 19504 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-02 01:25:30] CVMFS is ok
[2026-03-02 01:25:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-02 01:25:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-02 01:25:30] Further information can be found at the LHC@home message board.
[2026-03-02 01:25:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-02 01:25:30] Checking for apptainer binary...
[2026-03-02 01:25:30] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-02 01:25:30] Running /usr/bin/apptainer --version
[2026-03-02 01:25:30] apptainer version 1.4.1-1.1
[2026-03-02 01:25:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-02 01:25:30] atlasA215b
[2026-03-02 01:25:30] apptainer works
[2026-03-02 01:25:30] Set ATHENA_PROC_NUMBER=4
[2026-03-02 01:25:30] Set ATHENA_CORE_NUMBER=4
[2026-03-02 01:25:30] Starting ATLAS job with PandaID=7034982684
[2026-03-02 01:25:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-02 02:23:52]  *** The last 200 lines of the pilot log: ***
[2026-03-02 02:23:52] 2026-03-02 01:22:50,443 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-02 02:23:52] 2026-03-02 01:22:50,443 | INFO     | job 7034982684 has completed (purged errors)
[2026-03-02 02:23:52] 2026-03-02 01:22:50,443 | INFO     | overall cleanup function is called
[2026-03-02 02:23:52] 2026-03-02 01:22:50,637 | INFO     | PID=63918 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-02 02:23:52] 2026-03-02 01:22:51,450 | INFO     | --- collectZombieJob: --- 10, [68421]
[2026-03-02 02:23:52] 2026-03-02 01:22:51,450 | INFO     | zombie collector waiting for pid 68421
[2026-03-02 02:23:52] 2026-03-02 01:22:51,450 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-02 02:23:52] 2026-03-02 01:22:51,450 | INFO     | collected zombie processes
[2026-03-02 02:23:52] 2026-03-02 01:22:51,450 | INFO     | will attempt to kill all subprocesses of pid=68421
[2026-03-02 02:23:52] 2026-03-02 01:22:51,492 | INFO     | process IDs to be killed: [68421] (in reverse order)
[2026-03-02 02:23:52] 2026-03-02 01:22:51,525 | WARNING  | found no corresponding commands to process id(s)
[2026-03-02 02:23:52] 2026-03-02 01:22:51,526 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-02 02:23:52] 2026-03-02 01:22:51,527 | INFO     | did not find any defunct processes belonging to 68421
[2026-03-02 02:23:52] 2026-03-02 01:22:51,529 | INFO     | did not find any defunct processes belonging to 68421
[2026-03-02 02:23:52] 2026-03-02 01:22:51,529 | INFO     | ready for new job
[2026-03-02 02:23:52] 2026-03-02 01:22:51,529 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-02 02:23:52] 2026-03-02 01:22:51,529 | INFO     | **************************************
[2026-03-02 02:23:52] 2026-03-02 01:22:51,529 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-02 02:23:52] 2026-03-02 01:22:51,529 | INFO     | **************************************
[2026-03-02 02:23:52] 2026-03-02 01:22:51,530 | INFO     | 
[2026-03-02 02:23:52] 2026-03-02 01:22:51,530 | INFO     | architecture information:
[2026-03-02 02:23:52] 2026-03-02 01:22:51,530 | INFO     | executing command: cat /etc/os-release
[2026-03-02 02:23:52] 2026-03-02 01:22:51,544 | INFO     | cat /etc/os-release:
[2026-03-02 02:23:52] NAME="CentOS Linux"
[2026-03-02 02:23:52] VERSION="7 (Core)"
[2026-03-02 02:23:52] ID="centos"
[2026-03-02 02:23:52] ID_LIKE="rhel fedora"
[2026-03-02 02:23:52] VERSION_ID="7"
[2026-03-02 02:23:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-02 02:23:52] ANSI_COLOR="0;31"
[2026-03-02 02:23:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-02 02:23:52] HOME_URL="https://www.centos.org/"
[2026-03-02 02:23:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-02 02:23:52] 
[2026-03-02 02:23:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-02 02:23:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-02 02:23:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-02 02:23:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-02 02:23:52] 
[2026-03-02 02:23:52] 2026-03-02 01:22:51,545 | INFO     | **************************************
[2026-03-02 02:23:52] 2026-03-02 01:22:52,048 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-02 02:23:52] 2026-03-02 01:22:52,066 | INFO     | sufficient remaining disk space (331813486592 B)
[2026-03-02 02:23:52] 2026-03-02 01:22:52,067 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-02 02:23:52] 2026-03-02 01:22:52,067 | INFO     | current server update state: UPDATING_FINAL
[2026-03-02 02:23:52] 2026-03-02 01:22:52,067 | INFO     | update_server=False
[2026-03-02 02:23:52] 2026-03-02 01:22:52,067 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-02 02:23:52] 2026-03-02 01:22:52,067 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-02 02:23:52] 2026-03-02 01:22:52,067 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-02 02:23:52] 2026-03-02 01:22:52,603 | INFO     | all payload control threads have been joined
[2026-03-02 02:23:52] 2026-03-02 01:22:52,944 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-02 02:23:52] 2026-03-02 01:22:52,944 | INFO     | aborting loop
[2026-03-02 02:23:52] 2026-03-02 01:22:53,072 | INFO     | [job] retrieve thread has finished
[2026-03-02 02:23:52] 2026-03-02 01:22:53,073 | INFO     | [job] queue monitor thread has finished
[2026-03-02 02:23:52] 2026-03-02 01:22:53,106 | INFO     | all data control threads have been joined
[2026-03-02 02:23:52] 2026-03-02 01:22:53,108 | INFO     | all job control threads have been joined
[2026-03-02 02:23:52] 2026-03-02 01:22:53,218 | INFO     | [payload] failed_post thread has finished
[2026-03-02 02:23:52] 2026-03-02 01:22:53,609 | INFO     | [payload] control thread has finished
[2026-03-02 02:23:52] 2026-03-02 01:22:53,674 | INFO     | [job] validate thread has finished
[2026-03-02 02:23:52] 2026-03-02 01:22:53,740 | INFO     | [job] create_data_payload thread has finished
[2026-03-02 02:23:52] 2026-03-02 01:22:53,749 | INFO     | [payload] validate_post thread has finished
[2026-03-02 02:23:52] 2026-03-02 01:22:53,847 | INFO     | [payload] validate_pre thread has finished
[2026-03-02 02:23:52] 2026-03-02 01:22:53,950 | INFO     | [job] job monitor thread has finished
[2026-03-02 02:23:52] 2026-03-02 01:22:53,976 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-02 02:23:52] 2026-03-02 01:22:54,007 | INFO     | [data] copytool_in thread has finished
[2026-03-02 02:23:52] 2026-03-02 01:22:54,073 | INFO     | [data] copytool_out thread has finished
[2026-03-02 02:23:52] 2026-03-02 01:22:54,112 | INFO     | [data] control thread has finished
[2026-03-02 02:23:52] 2026-03-02 01:22:54,113 | INFO     | [job] control thread has finished
[2026-03-02 02:23:52] 2026-03-02 01:22:54,469 | INFO     | [payload] execute_payloads thread has finished
[2026-03-02 02:23:52] 2026-03-02 01:22:54,652 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-02 02:23:52] 2026-03-02 01:22:58,659 | INFO     | [data] queue_monitor thread has finished
[2026-03-02 02:23:52] 2026-03-02 01:23:22,761 | INFO     | PID=63918 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-02 02:23:52] 2026-03-02 01:23:22,762 | INFO     | found 0 job(s) in 20 queues
[2026-03-02 02:23:52] 2026-03-02 01:23:22,762 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-02 02:23:52] 2026-03-02 01:23:22,762 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-02 02:23:52] 2026-03-02 01:23:47,126 | INFO     | [monitor] cgroup control has ended
[2026-03-02 02:23:52] 2026-03-02 01:23:47,217 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140167280768832)>', '<ExcThread(monitor, started 140166475781888)>']
[2026-03-02 02:23:52] 2026-03-02 01:23:47,895 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-02 02:23:52] 2026-03-02 01:23:47,895 | INFO     | [monitor] control thread has ended
[2026-03-02 02:23:52] 2026-03-02 01:23:52,243 | INFO     | all workflow threads have been joined
[2026-03-02 02:23:52] 2026-03-02 01:23:52,243 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-02 02:23:52] 2026-03-02 01:23:52,244 | INFO     | traces error code: 0
[2026-03-02 02:23:52] 2026-03-02 01:23:52,244 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-02 02:23:52] 2026-03-02 01:23:52,323 [wrapper] ==== pilot stdout END ====
[2026-03-02 02:23:52] 2026-03-02 01:23:52,327 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-02 02:23:52] 2026-03-02 01:23:52,331 [wrapper] pilotpid: 63918
[2026-03-02 02:23:52] 2026-03-02 01:23:52,336 [wrapper] Pilot exit status: 0
[2026-03-02 02:23:52] 2026-03-02 01:23:52,348 [wrapper] pandaids: 7034982684
[2026-03-02 02:23:52] 2026-03-02 01:23:52,370 [wrapper] cleanup supervisor_pilot   73424 63919
[2026-03-02 02:23:52] 2026-03-02 01:23:52,374 [wrapper] Test setup, not cleaning
[2026-03-02 02:23:52] 2026-03-02 01:23:52,379 [wrapper] apfmon messages muted
[2026-03-02 02:23:52] 2026-03-02 01:23:52,383 [wrapper] ==== wrapper stdout END ====
[2026-03-02 02:23:52] 2026-03-02 01:23:52,386 [wrapper] ==== wrapper stderr END ====
[2026-03-02 02:23:52]  *** Error codes and diagnostics ***
[2026-03-02 02:23:52]     "exeErrorCode": 0,
[2026-03-02 02:23:52]     "exeErrorDiag": "",
[2026-03-02 02:23:52]     "pilotErrorCode": 0,
[2026-03-02 02:23:52]     "pilotErrorDiag": "",
[2026-03-02 02:23:52]  *** Listing of results directory ***
[2026-03-02 02:23:52] total 338244
[2026-03-02 02:23:52] -rw-r--r-- 1 boinc boinc    584627 Mar  1 13:02 pilot3.tar.gz
[2026-03-02 02:23:52] -rwx------ 1 boinc boinc     36322 Mar  1 13:05 runpilot2-wrapper.sh
[2026-03-02 02:23:52] -rw-r--r-- 1 boinc boinc      5111 Mar  1 13:08 queuedata.json
[2026-03-02 02:23:52] -rw-r--r-- 1 boinc boinc       100 Mar  2 01:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-02 02:23:52] -rwxr-xr-x 1 boinc boinc      7986 Mar  2 01:25 run_atlas
[2026-03-02 02:23:52] -rw-r--r-- 1 boinc boinc       105 Mar  2 01:25 job.xml
[2026-03-02 02:23:52] -rw-r--r-- 2 boinc boinc 188761828 Mar  2 01:25 EVNT.48700904._000067.pool.root.1
[2026-03-02 02:23:52] -rw-r--r-- 2 boinc boinc    597934 Mar  2 01:25 input.tar.gz
[2026-03-02 02:23:52] -rw-r--r-- 2 boinc boinc     15845 Mar  2 01:25 start_atlas.sh
[2026-03-02 02:23:52] drwxrwx--x 2 boinc boinc      4096 Mar  2 01:25 shared
[2026-03-02 02:23:52] -rw-r--r-- 1 boinc boinc         0 Mar  2 01:25 boinc_setup_complete
[2026-03-02 02:23:52] -rw-r--r-- 1 boinc boinc      6372 Mar  2 01:25 init_data.xml
[2026-03-02 02:23:52] -rw-r--r-- 1 boinc boinc         0 Mar  2 01:25 boinc_lockfile
[2026-03-02 02:23:52] -rw-r--r-- 1 boinc boinc      2519 Mar  2 01:25 pandaJob.out
[2026-03-02 02:23:52] -rw------- 1 boinc boinc    998184 Mar  2 01:25 agis_schedconf.cvmfs.json
[2026-03-02 02:23:52] -rw------- 1 boinc boinc   1513015 Mar  2 01:25 agis_ddmendpoints.agis.ALL.json
[2026-03-02 02:23:52] -rw------- 1 boinc boinc       431 Mar  2 01:25 workernode_map.json
[2026-03-02 02:23:52] drwx------ 5 boinc boinc      4096 Mar  2 01:25 pilot3
[2026-03-02 02:23:52] -rw------- 1 boinc boinc 152161531 Mar  2 02:22 HITS.48700906._001663.pool.root.1
[2026-03-02 02:23:52] -rw-r--r-- 1 boinc boinc       529 Mar  2 02:22 boinc_task_state.xml
[2026-03-02 02:23:52] -rw------- 1 boinc boinc      1017 Mar  2 02:22 memory_monitor_summary.json
[2026-03-02 02:23:52] -rw------- 1 boinc boinc    245820 Mar  2 02:22 log.48700906._001663.job.log.tgz.1
[2026-03-02 02:23:52] -rw------- 1 boinc boinc      6313 Mar  2 02:22 heartbeat.json
[2026-03-02 02:23:52] -rw------- 1 boinc boinc        95 Mar  2 02:23 pilot_heartbeat.json
[2026-03-02 02:23:52] -rw------- 1 boinc boinc      4746 Mar  2 02:23 pilotlog.txt
[2026-03-02 02:23:52] -rw-r--r-- 1 boinc boinc      8192 Mar  2 02:23 boinc_mmap_file
[2026-03-02 02:23:52] -rw-r--r-- 1 boinc boinc        27 Mar  2 02:23 wrapper_checkpoint.txt
[2026-03-02 02:23:52] -rw------- 1 boinc boinc    516023 Mar  2 02:23 log.48700906._001663.job.log.1
[2026-03-02 02:23:52] -rw------- 1 boinc boinc       357 Mar  2 02:23 output.list
[2026-03-02 02:23:52] -rw-r--r-- 1 boinc boinc       620 Mar  2 02:23 runtime_log
[2026-03-02 02:23:52] -rw------- 1 boinc boinc    778240 Mar  2 02:23 result.tar.gz
[2026-03-02 02:23:52] -rw-r--r-- 1 boinc boinc      8916 Mar  2 02:23 runtime_log.err
[2026-03-02 02:23:52] -rw------- 1 boinc boinc       661 Mar  2 02:23 WwfNDmLjuG9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmU99KDmuEqI8m.diag
[2026-03-02 02:23:52] -rw-r--r-- 1 boinc boinc     11106 Mar  2 02:23 stderr.txt
[2026-03-02 02:23:52] HITS file was successfully produced:
[2026-03-02 02:23:52] -rw------- 1 boinc boinc 152161531 Mar  2 02:22 shared/HITS.pool.root.1
[2026-03-02 02:23:52]  *** Contents of shared directory: ***
[2026-03-02 02:23:52] total 334304
[2026-03-02 02:23:52] -rw-r--r-- 2 boinc boinc 188761828 Mar  2 01:25 ATLAS.root_0
[2026-03-02 02:23:52] -rw-r--r-- 2 boinc boinc    597934 Mar  2 01:25 input.tar.gz
[2026-03-02 02:23:52] -rw-r--r-- 2 boinc boinc     15845 Mar  2 01:25 start_atlas.sh
[2026-03-02 02:23:52] -rw------- 1 boinc boinc 152161531 Mar  2 02:22 HITS.pool.root.1
[2026-03-02 02:23:52] -rw------- 1 boinc boinc    778240 Mar  2 02:23 result.tar.gz
02:23:54 (59807): run_atlas exited; CPU time 12739.142322
02:23:54 (59807): called boinc_finish(0)

</stderr_txt>
]]>

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