Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:53:29 (758603): wrapper (7.7.26015): starting
23:53:29 (758603): wrapper: running run_atlas (--nthreads 4)
[2026-03-01 23:53:29] Arguments: --nthreads 4
[2026-03-01 23:53:29] Threads: 4
[2026-03-01 23:53:29] Checking for CVMFS
[2026-03-01 23:53:29] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-01 23:53:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-01 23:53:29] Running cvmfs_config stat atlas.cern.ch
[2026-03-01 23:53:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-01 23:53:30] 2.9.2.0 3049 4552 96676 156785 1 50 27693100 36864001 0 130560 0 2080202 99.985 174942 15254 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-01 23:53:30] CVMFS is ok
[2026-03-01 23:53:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-01 23:53:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-01 23:53:30] Further information can be found at the LHC@home message board.
[2026-03-01 23:53:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-01 23:53:30] Checking for apptainer binary...
[2026-03-01 23:53:30] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-01 23:53:30] Running /usr/bin/apptainer --version
[2026-03-01 23:53:30] apptainer version 1.4.1-1.1
[2026-03-01 23:53:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-01 23:53:30] thA383a
[2026-03-01 23:53:30] apptainer works
[2026-03-01 23:53:30] Set ATHENA_PROC_NUMBER=4
[2026-03-01 23:53:30] Set ATHENA_CORE_NUMBER=4
[2026-03-01 23:53:30] Starting ATLAS job with PandaID=7034680242
[2026-03-01 23:53:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-02 00:49:53]  *** The last 200 lines of the pilot log: ***
[2026-03-02 00:49:53] 2026-03-01 23:49:26,265 | INFO     | 
[2026-03-02 00:49:53] 2026-03-01 23:49:26,265 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2026-03-02 00:49:53] 2026-03-01 23:49:26,285 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-02 00:49:53] 2026-03-01 23:49:26,285 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-02 00:49:53] 2026-03-01 23:49:26,285 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-02 00:49:53] 2026-03-01 23:49:26,285 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-02 00:49:53] 2026-03-01 23:49:26,285 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-02 00:49:53] 2026-03-01 23:49:26,285 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-02 00:49:53] 2026-03-01 23:49:26,285 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-02 00:49:53] 2026-03-01 23:49:26,285 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-02 00:49:53] 2026-03-01 23:49:26,285 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-02 00:49:53] 2026-03-01 23:49:26,285 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-02 00:49:53] 2026-03-01 23:49:26,285 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-02 00:49:53] 2026-03-01 23:49:26,285 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-02 00:49:53] 2026-03-01 23:49:26,285 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-02 00:49:53] 2026-03-01 23:49:26,285 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-02 00:49:53] 2026-03-01 23:49:26,285 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-02 00:49:53] 2026-03-01 23:49:26,285 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-02 00:49:53] 2026-03-01 23:49:26,285 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-02 00:49:53] 2026-03-01 23:49:26,285 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-02 00:49:53] 2026-03-01 23:49:26,286 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-02 00:49:53] 2026-03-01 23:49:26,286 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-02 00:49:53] 2026-03-01 23:49:26,286 | INFO     | job 7034680242 has completed (purged errors)
[2026-03-02 00:49:53] 2026-03-01 23:49:26,286 | INFO     | overall cleanup function is called
[2026-03-02 00:49:53] 2026-03-01 23:49:27,292 | INFO     | --- collectZombieJob: --- 10, [767195]
[2026-03-02 00:49:53] 2026-03-01 23:49:27,292 | INFO     | zombie collector waiting for pid 767195
[2026-03-02 00:49:53] 2026-03-01 23:49:27,292 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-02 00:49:53] 2026-03-01 23:49:27,292 | INFO     | collected zombie processes
[2026-03-02 00:49:53] 2026-03-01 23:49:27,293 | INFO     | will attempt to kill all subprocesses of pid=767195
[2026-03-02 00:49:53] 2026-03-01 23:49:27,334 | INFO     | process IDs to be killed: [767195] (in reverse order)
[2026-03-02 00:49:53] 2026-03-01 23:49:27,367 | WARNING  | found no corresponding commands to process id(s)
[2026-03-02 00:49:53] 2026-03-01 23:49:27,367 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-02 00:49:53] 2026-03-01 23:49:27,369 | INFO     | did not find any defunct processes belonging to 767195
[2026-03-02 00:49:53] 2026-03-01 23:49:27,370 | INFO     | did not find any defunct processes belonging to 767195
[2026-03-02 00:49:53] 2026-03-01 23:49:27,370 | INFO     | ready for new job
[2026-03-02 00:49:53] 2026-03-01 23:49:27,370 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-02 00:49:53] 2026-03-01 23:49:27,371 | INFO     | **************************************
[2026-03-02 00:49:53] 2026-03-01 23:49:27,371 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-02 00:49:53] 2026-03-01 23:49:27,371 | INFO     | **************************************
[2026-03-02 00:49:53] 2026-03-01 23:49:27,371 | INFO     | 
[2026-03-02 00:49:53] 2026-03-01 23:49:27,371 | INFO     | architecture information:
[2026-03-02 00:49:53] 2026-03-01 23:49:27,372 | INFO     | executing command: cat /etc/os-release
[2026-03-02 00:49:53] 2026-03-01 23:49:27,386 | INFO     | cat /etc/os-release:
[2026-03-02 00:49:53] NAME="CentOS Linux"
[2026-03-02 00:49:53] VERSION="7 (Core)"
[2026-03-02 00:49:53] ID="centos"
[2026-03-02 00:49:53] ID_LIKE="rhel fedora"
[2026-03-02 00:49:53] VERSION_ID="7"
[2026-03-02 00:49:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-02 00:49:53] ANSI_COLOR="0;31"
[2026-03-02 00:49:53] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-02 00:49:53] HOME_URL="https://www.centos.org/"
[2026-03-02 00:49:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-02 00:49:53] 
[2026-03-02 00:49:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-02 00:49:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-02 00:49:53] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-02 00:49:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-02 00:49:53] 
[2026-03-02 00:49:53] 2026-03-01 23:49:27,386 | INFO     | **************************************
[2026-03-02 00:49:53] 2026-03-01 23:49:27,889 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-02 00:49:53] 2026-03-01 23:49:27,907 | INFO     | sufficient remaining disk space (231351517184 B)
[2026-03-02 00:49:53] 2026-03-01 23:49:27,907 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-02 00:49:53] 2026-03-01 23:49:27,907 | INFO     | current server update state: UPDATING_FINAL
[2026-03-02 00:49:53] 2026-03-01 23:49:27,907 | INFO     | update_server=False
[2026-03-02 00:49:53] 2026-03-01 23:49:27,907 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-02 00:49:53] 2026-03-01 23:49:27,907 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-02 00:49:53] 2026-03-01 23:49:27,907 | INFO     | found 0 job(s) in 20 queues
[2026-03-02 00:49:53] 2026-03-01 23:49:27,908 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-02 00:49:53] 2026-03-01 23:49:27,908 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-02 00:49:53] 2026-03-01 23:49:27,908 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-02 00:49:53] 2026-03-01 23:49:27,908 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-02 00:49:53] 2026-03-01 23:49:27,908 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-02 00:49:53] 2026-03-01 23:49:27,908 | INFO     | aborting loop
[2026-03-02 00:49:53] 2026-03-01 23:49:28,313 | INFO     | all payload control threads have been joined
[2026-03-02 00:49:53] 2026-03-01 23:49:28,391 | INFO     | all job control threads have been joined
[2026-03-02 00:49:53] 2026-03-01 23:49:28,420 | INFO     | all data control threads have been joined
[2026-03-02 00:49:53] 2026-03-01 23:49:28,867 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-02 00:49:53] 2026-03-01 23:49:28,913 | INFO     | [job] retrieve thread has finished
[2026-03-02 00:49:53] 2026-03-01 23:49:28,914 | INFO     | [job] queue monitor thread has finished
[2026-03-02 00:49:53] 2026-03-01 23:49:28,914 | INFO     | [job] job monitor thread has finished
[2026-03-02 00:49:53] 2026-03-01 23:49:29,003 | INFO     | [payload] validate_pre thread has finished
[2026-03-02 00:49:53] 2026-03-01 23:49:29,114 | INFO     | [payload] failed_post thread has finished
[2026-03-02 00:49:53] 2026-03-01 23:49:29,121 | INFO     | [data] copytool_in thread has finished
[2026-03-02 00:49:53] 2026-03-01 23:49:29,314 | INFO     | [payload] control thread has finished
[2026-03-02 00:49:53] 2026-03-01 23:49:29,397 | INFO     | [job] control thread has finished
[2026-03-02 00:49:53] 2026-03-01 23:49:29,426 | INFO     | [data] control thread has finished
[2026-03-02 00:49:53] 2026-03-01 23:49:29,972 | INFO     | [payload] execute_payloads thread has finished
[2026-03-02 00:49:53] 2026-03-01 23:49:30,309 | INFO     | [job] validate thread has finished
[2026-03-02 00:49:53] 2026-03-01 23:49:30,376 | INFO     | [job] create_data_payload thread has finished
[2026-03-02 00:49:53] 2026-03-01 23:49:30,407 | INFO     | [payload] validate_post thread has finished
[2026-03-02 00:49:53] 2026-03-01 23:49:30,873 | INFO     | [data] copytool_out thread has finished
[2026-03-02 00:49:53] 2026-03-01 23:49:31,915 | INFO     | [data] queue_monitor thread has finished
[2026-03-02 00:49:53] 2026-03-01 23:49:38,530 | INFO     | job.realtimelogging is not enabled
[2026-03-02 00:49:53] 2026-03-01 23:49:39,535 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-02 00:49:53] 2026-03-01 23:49:46,388 | INFO     | [monitor] cgroup control has ended
[2026-03-02 00:49:53] 2026-03-01 23:49:48,364 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140057940125504)>', '<ExcThread(monitor, started 140056853468928)>']
[2026-03-02 00:49:53] 2026-03-01 23:49:49,018 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-02 00:49:53] 2026-03-01 23:49:49,018 | INFO     | [monitor] control thread has ended
[2026-03-02 00:49:53] 2026-03-01 23:49:53,390 | INFO     | all workflow threads have been joined
[2026-03-02 00:49:53] 2026-03-01 23:49:53,390 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-02 00:49:53] 2026-03-01 23:49:53,390 | INFO     | traces error code: 0
[2026-03-02 00:49:53] 2026-03-01 23:49:53,390 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-02 00:49:53] 2026-03-01 23:49:53,468 [wrapper] ==== pilot stdout END ====
[2026-03-02 00:49:53] 2026-03-01 23:49:53,472 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-02 00:49:53] 2026-03-01 23:49:53,476 [wrapper] pilotpid: 762704
[2026-03-02 00:49:53] 2026-03-01 23:49:53,480 [wrapper] Pilot exit status: 0
[2026-03-02 00:49:53] 2026-03-01 23:49:53,491 [wrapper] pandaids: 7034680242
[2026-03-02 00:49:53] 2026-03-01 23:49:53,513 [wrapper] cleanup supervisor_pilot  772590 762705
[2026-03-02 00:49:53] 2026-03-01 23:49:53,517 [wrapper] Test setup, not cleaning
[2026-03-02 00:49:53] 2026-03-01 23:49:53,520 [wrapper] apfmon messages muted
[2026-03-02 00:49:53] 2026-03-01 23:49:53,524 [wrapper] ==== wrapper stdout END ====
[2026-03-02 00:49:53] 2026-03-01 23:49:53,528 [wrapper] ==== wrapper stderr END ====
[2026-03-02 00:49:53]  *** Error codes and diagnostics ***
[2026-03-02 00:49:53]     "exeErrorCode": 0,
[2026-03-02 00:49:53]     "exeErrorDiag": "",
[2026-03-02 00:49:53]     "pilotErrorCode": 0,
[2026-03-02 00:49:53]     "pilotErrorDiag": "",
[2026-03-02 00:49:53]  *** Listing of results directory ***
[2026-03-02 00:49:53] total 331224
[2026-03-02 00:49:53] -rw-r--r-- 1 boinc boinc    584627 Mar  1 11:14 pilot3.tar.gz
[2026-03-02 00:49:53] -rwx------ 1 boinc boinc     36322 Mar  1 11:14 runpilot2-wrapper.sh
[2026-03-02 00:49:53] -rw-r--r-- 1 boinc boinc      5111 Mar  1 11:15 queuedata.json
[2026-03-02 00:49:53] -rw-r--r-- 1 boinc boinc       100 Mar  1 23:53 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-02 00:49:53] -rwxr-xr-x 1 boinc boinc      7986 Mar  1 23:53 run_atlas
[2026-03-02 00:49:53] -rw-r--r-- 1 boinc boinc       105 Mar  1 23:53 job.xml
[2026-03-02 00:49:53] -rw-r--r-- 2 boinc boinc 191514740 Mar  1 23:53 EVNT.48700928._000054.pool.root.1
[2026-03-02 00:49:53] -rw-r--r-- 2 boinc boinc    597941 Mar  1 23:53 input.tar.gz
[2026-03-02 00:49:53] -rw-r--r-- 2 boinc boinc     15845 Mar  1 23:53 start_atlas.sh
[2026-03-02 00:49:53] drwxrwx--x 2 boinc boinc      4096 Mar  1 23:53 shared
[2026-03-02 00:49:53] -rw-r--r-- 1 boinc boinc         0 Mar  1 23:53 boinc_setup_complete
[2026-03-02 00:49:53] -rw-r--r-- 1 boinc boinc      6377 Mar  1 23:53 init_data.xml
[2026-03-02 00:49:53] -rw-r--r-- 1 boinc boinc         0 Mar  1 23:53 boinc_lockfile
[2026-03-02 00:49:53] -rw-r--r-- 1 boinc boinc      2518 Mar  1 23:53 pandaJob.out
[2026-03-02 00:49:53] -rw------- 1 boinc boinc    998184 Mar  1 23:53 agis_schedconf.cvmfs.json
[2026-03-02 00:49:53] -rw------- 1 boinc boinc   1513015 Mar  1 23:53 agis_ddmendpoints.agis.ALL.json
[2026-03-02 00:49:53] -rw------- 1 boinc boinc       422 Mar  1 23:53 workernode_map.json
[2026-03-02 00:49:53] drwx------ 5 boinc boinc      4096 Mar  1 23:53 pilot3
[2026-03-02 00:49:53] -rw------- 1 boinc boinc        95 Mar  2 00:48 pilot_heartbeat.json
[2026-03-02 00:49:53] -rw-r--r-- 1 boinc boinc       529 Mar  2 00:49 boinc_task_state.xml
[2026-03-02 00:49:53] -rw------- 1 boinc boinc 142225029 Mar  2 00:49 HITS.48700930._001354.pool.root.1
[2026-03-02 00:49:53] -rw------- 1 boinc boinc      1022 Mar  2 00:49 memory_monitor_summary.json
[2026-03-02 00:49:53] -rw------- 1 boinc boinc    254453 Mar  2 00:49 log.48700930._001354.job.log.tgz.1
[2026-03-02 00:49:53] -rw------- 1 boinc boinc      6310 Mar  2 00:49 heartbeat.json
[2026-03-02 00:49:53] -rw-r--r-- 1 boinc boinc      8192 Mar  2 00:49 boinc_mmap_file
[2026-03-02 00:49:53] -rw-r--r-- 1 boinc boinc        27 Mar  2 00:49 wrapper_checkpoint.txt
[2026-03-02 00:49:53] -rw------- 1 boinc boinc      4624 Mar  2 00:49 pilotlog.txt
[2026-03-02 00:49:53] -rw------- 1 boinc boinc    505703 Mar  2 00:49 log.48700930._001354.job.log.1
[2026-03-02 00:49:53] -rw------- 1 boinc boinc       357 Mar  2 00:49 output.list
[2026-03-02 00:49:53] -rw-r--r-- 1 boinc boinc       620 Mar  2 00:49 runtime_log
[2026-03-02 00:49:53] -rw------- 1 boinc boinc    778240 Mar  2 00:49 result.tar.gz
[2026-03-02 00:49:53] -rw------- 1 boinc boinc       658 Mar  2 00:49 yxFNDm4zsG9n9Rq4apOajLDm4fhM0noT9bVooX4SDmQs7KDmHHYjOn.diag
[2026-03-02 00:49:53] -rw-r--r-- 1 boinc boinc      8901 Mar  2 00:49 runtime_log.err
[2026-03-02 00:49:53] -rw-r--r-- 1 boinc boinc     13003 Mar  2 00:49 stderr.txt
[2026-03-02 00:49:53] HITS file was successfully produced:
[2026-03-02 00:49:53] -rw------- 1 boinc boinc 142225029 Mar  2 00:49 shared/HITS.pool.root.1
[2026-03-02 00:49:53]  *** Contents of shared directory: ***
[2026-03-02 00:49:53] total 327280
[2026-03-02 00:49:53] -rw-r--r-- 2 boinc boinc 191514740 Mar  1 23:53 ATLAS.root_0
[2026-03-02 00:49:53] -rw-r--r-- 2 boinc boinc    597941 Mar  1 23:53 input.tar.gz
[2026-03-02 00:49:53] -rw-r--r-- 2 boinc boinc     15845 Mar  1 23:53 start_atlas.sh
[2026-03-02 00:49:53] -rw------- 1 boinc boinc 142225029 Mar  2 00:49 HITS.pool.root.1
[2026-03-02 00:49:53] -rw------- 1 boinc boinc    778240 Mar  2 00:49 result.tar.gz
00:49:55 (758603): run_atlas exited; CPU time 12329.488380
00:49:55 (758603): called boinc_finish(0)

</stderr_txt>
]]>

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