Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:49:01 (2467492): wrapper (7.7.26015): starting
07:49:01 (2467492): wrapper: running run_atlas (--nthreads 3)
[2026-03-02 07:49:01] Arguments: --nthreads 3
[2026-03-02 07:49:01] Threads: 3
[2026-03-02 07:49:01] Checking for CVMFS
[2026-03-02 07:49:02] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-02 07:49:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-02 07:49:02] Running cvmfs_config stat atlas.cern.ch
[2026-03-02 07:49:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-02 07:49:02] 2.9.2.0 1557025 6686 82604 156797 1 50 27447275 36864000 0 130560 0 2578038 99.981 257755 16250 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-02 07:49:02] CVMFS is ok
[2026-03-02 07:49:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-02 07:49:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-02 07:49:02] Further information can be found at the LHC@home message board.
[2026-03-02 07:49:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-02 07:49:02] Checking for apptainer binary...
[2026-03-02 07:49:02] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-02 07:49:02] Running /usr/bin/apptainer --version
[2026-03-02 07:49:02] apptainer version 1.4.1-1.1
[2026-03-02 07:49:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-02 07:49:02] thA327
[2026-03-02 07:49:02] apptainer works
[2026-03-02 07:49:02] Set ATHENA_PROC_NUMBER=3
[2026-03-02 07:49:02] Set ATHENA_CORE_NUMBER=3
[2026-03-02 07:49:02] Starting ATLAS job with PandaID=7031966538
[2026-03-02 07:49:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-02 09:24:29]  *** The last 200 lines of the pilot log: ***
[2026-03-02 09:24:29] 2026-03-02 08:23:59,269 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-02 09:24:29] 2026-03-02 08:23:59,269 | INFO     | collected zombie processes
[2026-03-02 09:24:29] 2026-03-02 08:23:59,269 | INFO     | will attempt to kill all subprocesses of pid=2475955
[2026-03-02 09:24:29] 2026-03-02 08:23:59,310 | INFO     | process IDs to be killed: [2475955] (in reverse order)
[2026-03-02 09:24:29] 2026-03-02 08:23:59,334 | WARNING  | found no corresponding commands to process id(s)
[2026-03-02 09:24:29] 2026-03-02 08:23:59,334 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-02 09:24:29] 2026-03-02 08:23:59,336 | INFO     | did not find any defunct processes belonging to 2475955
[2026-03-02 09:24:29] 2026-03-02 08:23:59,337 | INFO     | did not find any defunct processes belonging to 2475955
[2026-03-02 09:24:29] 2026-03-02 08:23:59,337 | INFO     | ready for new job
[2026-03-02 09:24:29] 2026-03-02 08:23:59,337 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-02 09:24:29] 2026-03-02 08:23:59,338 | INFO     | **************************************
[2026-03-02 09:24:29] 2026-03-02 08:23:59,338 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-02 09:24:29] 2026-03-02 08:23:59,338 | INFO     | **************************************
[2026-03-02 09:24:29] 2026-03-02 08:23:59,338 | INFO     | 
[2026-03-02 09:24:29] 2026-03-02 08:23:59,338 | INFO     | architecture information:
[2026-03-02 09:24:29] 2026-03-02 08:23:59,338 | INFO     | executing command: cat /etc/os-release
[2026-03-02 09:24:29] 2026-03-02 08:23:59,347 | INFO     | cat /etc/os-release:
[2026-03-02 09:24:29] NAME="CentOS Linux"
[2026-03-02 09:24:29] VERSION="7 (Core)"
[2026-03-02 09:24:29] ID="centos"
[2026-03-02 09:24:29] ID_LIKE="rhel fedora"
[2026-03-02 09:24:29] VERSION_ID="7"
[2026-03-02 09:24:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-02 09:24:29] ANSI_COLOR="0;31"
[2026-03-02 09:24:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-02 09:24:29] HOME_URL="https://www.centos.org/"
[2026-03-02 09:24:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-02 09:24:29] 
[2026-03-02 09:24:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-02 09:24:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-02 09:24:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-02 09:24:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-02 09:24:29] 
[2026-03-02 09:24:29] 2026-03-02 08:23:59,347 | INFO     | **************************************
[2026-03-02 09:24:29] 2026-03-02 08:23:59,850 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-02 09:24:29] 2026-03-02 08:23:59,862 | INFO     | sufficient remaining disk space (376814174208 B)
[2026-03-02 09:24:29] 2026-03-02 08:23:59,862 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-02 09:24:29] 2026-03-02 08:23:59,862 | INFO     | current server update state: UPDATING_FINAL
[2026-03-02 09:24:29] 2026-03-02 08:23:59,862 | INFO     | update_server=False
[2026-03-02 09:24:29] 2026-03-02 08:23:59,862 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-02 09:24:29] 2026-03-02 08:23:59,863 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-02 09:24:29] 2026-03-02 08:23:59,863 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-02 09:24:29] 2026-03-02 08:23:59,863 | INFO     | aborting loop
[2026-03-02 09:24:29] 2026-03-02 08:24:00,275 | INFO     | all payload control threads have been joined
[2026-03-02 09:24:29] 2026-03-02 08:24:00,285 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-02 09:24:29] 2026-03-02 08:24:00,477 | INFO     | all data control threads have been joined
[2026-03-02 09:24:29] 2026-03-02 08:24:00,498 | INFO     | all job control threads have been joined
[2026-03-02 09:24:29] 2026-03-02 08:24:00,867 | INFO     | [job] job monitor thread has finished
[2026-03-02 09:24:29] 2026-03-02 08:24:00,867 | INFO     | [job] queue monitor thread has finished
[2026-03-02 09:24:29] 2026-03-02 08:24:00,868 | INFO     | [job] retrieve thread has finished
[2026-03-02 09:24:29] 2026-03-02 08:24:00,906 | INFO     | [payload] validate_pre thread has finished
[2026-03-02 09:24:29] 2026-03-02 08:24:01,004 | INFO     | [data] copytool_in thread has finished
[2026-03-02 09:24:29] 2026-03-02 08:24:01,276 | INFO     | [payload] control thread has finished
[2026-03-02 09:24:29] 2026-03-02 08:24:01,483 | INFO     | [data] control thread has finished
[2026-03-02 09:24:29] 2026-03-02 08:24:01,504 | INFO     | [job] control thread has finished
[2026-03-02 09:24:29] 2026-03-02 08:24:01,599 | INFO     | [payload] execute_payloads thread has finished
[2026-03-02 09:24:29] 2026-03-02 08:24:01,907 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-02 09:24:29] 2026-03-02 08:24:02,135 | INFO     | [payload] validate_post thread has finished
[2026-03-02 09:24:29] 2026-03-02 08:24:02,262 | INFO     | [job] validate thread has finished
[2026-03-02 09:24:29] 2026-03-02 08:24:02,262 | INFO     | [payload] failed_post thread has finished
[2026-03-02 09:24:29] 2026-03-02 08:24:02,291 | INFO     | [data] copytool_out thread has finished
[2026-03-02 09:24:29] 2026-03-02 08:24:02,340 | INFO     | [job] create_data_payload thread has finished
[2026-03-02 09:24:29] 2026-03-02 08:24:03,042 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-02 09:24:29] 2026-03-02 08:24:07,049 | INFO     | [data] queue_monitor thread has finished
[2026-03-02 09:24:29] 2026-03-02 08:24:19,524 | INFO     | [monitor] cgroup control has ended
[2026-03-02 09:24:29] 2026-03-02 08:24:19,542 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140663604385600)>', '<ExcThread(monitor, started 140663123339008)>']
[2026-03-02 09:24:29] 2026-03-02 08:24:24,568 | INFO     | all workflow threads have been joined
[2026-03-02 09:24:29] 2026-03-02 08:24:24,568 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-02 09:24:29] 2026-03-02 08:24:24,568 | INFO     | traces error code: 0
[2026-03-02 09:24:29] 2026-03-02 08:24:24,568 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-02 09:24:29] 2026-03-02 08:24:29,792 | INFO     | PID=2471531 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-02 09:24:29] 2026-03-02 08:24:29,792 | INFO     | found 0 job(s) in 20 queues
[2026-03-02 09:24:29] 2026-03-02 08:24:29,792 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-02 09:24:29] 2026-03-02 08:24:29,792 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-02 09:24:29] 2026-03-02 08:24:29,792 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-02 09:24:29] 2026-03-02 08:24:29,792 | INFO     | [monitor] control thread has ended
[2026-03-02 09:24:29] 2026-03-02 08:24:29,838 [wrapper] ==== pilot stdout END ====
[2026-03-02 09:24:29] 2026-03-02 08:24:29,840 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-02 09:24:29] 2026-03-02 08:24:29,842 [wrapper] pilotpid: 2471531
[2026-03-02 09:24:29] 2026-03-02 08:24:29,844 [wrapper] Pilot exit status: 0
[2026-03-02 09:24:29] 2026-03-02 08:24:29,851 [wrapper] pandaids: 7031966538
[2026-03-02 09:24:29] 2026-03-02 08:24:29,866 [wrapper] cleanup supervisor_pilot 2481475 2471532
[2026-03-02 09:24:29] 2026-03-02 08:24:29,869 [wrapper] Test setup, not cleaning
[2026-03-02 09:24:29] 2026-03-02 08:24:29,871 [wrapper] apfmon messages muted
[2026-03-02 09:24:29] 2026-03-02 08:24:29,873 [wrapper] ==== wrapper stdout END ====
[2026-03-02 09:24:29] 2026-03-02 08:24:29,875 [wrapper] ==== wrapper stderr END ====
[2026-03-02 09:24:29]  *** Error codes and diagnostics ***
[2026-03-02 09:24:29]     "exeErrorCode": 0,
[2026-03-02 09:24:29]     "exeErrorDiag": "",
[2026-03-02 09:24:29]     "pilotErrorCode": 0,
[2026-03-02 09:24:29]     "pilotErrorDiag": "",
[2026-03-02 09:24:29]  *** Listing of results directory ***
[2026-03-02 09:24:29] total 483096
[2026-03-02 09:24:29] -rw-r--r-- 1 boinc boinc    584627 Feb 27 19:17 pilot3.tar.gz
[2026-03-02 09:24:29] -rwx------ 1 boinc boinc     36322 Feb 27 19:17 runpilot2-wrapper.sh
[2026-03-02 09:24:29] -rw-r--r-- 1 boinc boinc      5111 Feb 27 19:17 queuedata.json
[2026-03-02 09:24:29] -rw-r--r-- 1 boinc boinc       100 Mar  2 07:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-02 09:24:29] -rwxr-xr-x 1 boinc boinc      7986 Mar  2 07:49 run_atlas
[2026-03-02 09:24:29] -rw-r--r-- 1 boinc boinc       105 Mar  2 07:49 job.xml
[2026-03-02 09:24:29] -rw-r--r-- 2 boinc boinc 280494393 Mar  2 07:49 EVNT.48220229._000002.pool.root.1
[2026-03-02 09:24:29] -rw-r--r-- 2 boinc boinc    597970 Mar  2 07:49 input.tar.gz
[2026-03-02 09:24:29] -rw-r--r-- 2 boinc boinc     15845 Mar  2 07:49 start_atlas.sh
[2026-03-02 09:24:29] drwxrwx--x 2 boinc boinc      4096 Mar  2 07:49 shared
[2026-03-02 09:24:29] -rw-r--r-- 1 boinc boinc         0 Mar  2 07:49 boinc_setup_complete
[2026-03-02 09:24:29] -rw-r--r-- 1 boinc boinc      6446 Mar  2 07:49 init_data.xml
[2026-03-02 09:24:29] -rw-r--r-- 1 boinc boinc         0 Mar  2 07:49 boinc_lockfile
[2026-03-02 09:24:29] -rw-r--r-- 1 boinc boinc      2561 Mar  2 07:49 pandaJob.out
[2026-03-02 09:24:29] -rw------- 1 boinc boinc    998242 Mar  2 07:49 agis_schedconf.cvmfs.json
[2026-03-02 09:24:29] -rw------- 1 boinc boinc   1513015 Mar  2 07:49 agis_ddmendpoints.agis.ALL.json
[2026-03-02 09:24:29] -rw------- 1 boinc boinc       423 Mar  2 07:49 workernode_map.json
[2026-03-02 09:24:29] drwx------ 5 boinc boinc      4096 Mar  2 07:49 pilot3
[2026-03-02 09:24:29] -rw-r--r-- 1 boinc boinc       529 Mar  2 09:23 boinc_task_state.xml
[2026-03-02 09:24:29] -rw------- 1 boinc boinc 208102557 Mar  2 09:23 HITS.48838591._000965.pool.root.1
[2026-03-02 09:24:29] -rw------- 1 boinc boinc        95 Mar  2 09:23 pilot_heartbeat.json
[2026-03-02 09:24:29] -rw------- 1 boinc boinc      1028 Mar  2 09:23 memory_monitor_summary.json
[2026-03-02 09:24:29] -rw------- 1 boinc boinc    260545 Mar  2 09:23 log.48838591._000965.job.log.tgz.1
[2026-03-02 09:24:29] -rw------- 1 boinc boinc      6284 Mar  2 09:23 heartbeat.json
[2026-03-02 09:24:29] -rw-r--r-- 1 boinc boinc      8192 Mar  2 09:24 boinc_mmap_file
[2026-03-02 09:24:29] -rw-r--r-- 1 boinc boinc        27 Mar  2 09:24 wrapper_checkpoint.txt
[2026-03-02 09:24:29] -rw------- 1 boinc boinc       747 Mar  2 09:24 pilotlog.txt
[2026-03-02 09:24:29] -rw------- 1 boinc boinc    827552 Mar  2 09:24 log.48838591._000965.job.log.1
[2026-03-02 09:24:29] -rw------- 1 boinc boinc       357 Mar  2 09:24 output.list
[2026-03-02 09:24:29] -rw-r--r-- 1 boinc boinc       620 Mar  2 09:24 runtime_log
[2026-03-02 09:24:29] -rw------- 1 boinc boinc   1105920 Mar  2 09:24 result.tar.gz
[2026-03-02 09:24:29] -rw-r--r-- 1 boinc boinc      8896 Mar  2 09:24 runtime_log.err
[2026-03-02 09:24:29] -rw------- 1 boinc boinc       657 Mar  2 09:24 0DVNDmyZHG9n9Rq4apOajLDm4fhM0noT9bVooX4SDmLf3KDmvhSVHo.diag
[2026-03-02 09:24:29] -rw-r--r-- 1 boinc boinc     10412 Mar  2 09:24 stderr.txt
[2026-03-02 09:24:29] HITS file was successfully produced:
[2026-03-02 09:24:29] -rw------- 1 boinc boinc 208102557 Mar  2 09:23 shared/HITS.pool.root.1
[2026-03-02 09:24:29]  *** Contents of shared directory: ***
[2026-03-02 09:24:29] total 478840
[2026-03-02 09:24:29] -rw-r--r-- 2 boinc boinc 280494393 Mar  2 07:49 ATLAS.root_0
[2026-03-02 09:24:29] -rw-r--r-- 2 boinc boinc    597970 Mar  2 07:49 input.tar.gz
[2026-03-02 09:24:29] -rw-r--r-- 2 boinc boinc     15845 Mar  2 07:49 start_atlas.sh
[2026-03-02 09:24:29] -rw------- 1 boinc boinc 208102557 Mar  2 09:23 HITS.pool.root.1
[2026-03-02 09:24:29] -rw------- 1 boinc boinc   1105920 Mar  2 09:24 result.tar.gz
09:24:31 (2467492): run_atlas exited; CPU time 16268.186464
09:24:31 (2467492): called boinc_finish(0)

</stderr_txt>
]]>

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