Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
06:07:21 (4169): wrapper (7.7.26015): starting
06:07:21 (4169): wrapper: running run_atlas (--nthreads 12)
[2026-03-01 06:07:21] Arguments: --nthreads 12
[2026-03-01 06:07:21] Threads: 12
[2026-03-01 06:07:21] Checking for CVMFS
[2026-03-01 06:07:21] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-01 06:07:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-01 06:07:22] Running cvmfs_config stat atlas.cern.ch
[2026-03-01 06:07:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-01 06:07:22] 2.11.2.0 25590 325082 99420 156766 2 50 17017052 20275200 1 130560 2 151049949 99.953 15013300 26504 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-01 06:07:22] CVMFS is ok
[2026-03-01 06:07:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-01 06:07:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-01 06:07:22] Further information can be found at the LHC@home message board.
[2026-03-01 06:07:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-01 06:07:22] Checking for apptainer binary...
[2026-03-01 06:07:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-01 06:07:22] Running /usr/bin/apptainer --version
[2026-03-01 06:07:22] apptainer version 1.3.2-1.el7
[2026-03-01 06:07:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-01 06:07:23] c-205-24.aglt2.org
[2026-03-01 06:07:23] apptainer works
[2026-03-01 06:07:23] Set ATHENA_PROC_NUMBER=12
[2026-03-01 06:07:23] Set ATHENA_CORE_NUMBER=12
[2026-03-01 06:07:23] Starting ATLAS job with PandaID=7034442105
[2026-03-01 06:07:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-01 07:28:56]  *** The last 200 lines of the pilot log: ***
[2026-03-01 07:28:56]  guid=fc867b2b-89c8-4680-b9cc-39e4e4b9b5d7
[2026-03-01 07:28:56]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-01 07:28:56]  is_altstaged=None
[2026-03-01 07:28:56]  is_tar=False
[2026-03-01 07:28:56]  lfn=log.48838577._002317.job.log.tgz.1
[2026-03-01 07:28:56]  mtime=0
[2026-03-01 07:28:56]  protocol_id=None
[2026-03-01 07:28:56]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-01 07:28:56]  replicas=None
[2026-03-01 07:28:56]  scope=mc23_13p6TeV
[2026-03-01 07:28:56]  status=None
[2026-03-01 07:28:56]  status_code=0
[2026-03-01 07:28:56]  storage_token=
[2026-03-01 07:28:56]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-7034442105/log.48838577._002317.job.log.tgz.1
[2026-03-01 07:28:56]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f5/17/log.48838577._002317.job.log.tgz.1
[2026-03-01 07:28:56]  workdir=None
[2026-03-01 07:28:56] ]
[2026-03-01 07:28:56] 2026-03-01 12:28:28,434 | INFO     | transferring file log.48838577._002317.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-7034442105/log.48838577._002317.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-03-01 07:28:56] 2026-03-01 12:28:28,434 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-7034442105/log.48838577._002317.job.log.tgz.1 /tmp/boinchome/slots/0/log.48838577._002317.job
[2026-03-01 07:28:56] 2026-03-01 12:28:28,458 | INFO     | adding to output.list: log.48838577._002317.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f5/17/log.48838577._002317.job.log.tg
[2026-03-01 07:28:56] 2026-03-01 12:28:28,459 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-01 07:28:56] 2026-03-01 12:28:28,459 | INFO     | summary of transferred files:
[2026-03-01 07:28:56] 2026-03-01 12:28:28,459 | INFO     |  -- lfn=log.48838577._002317.job.log.tgz.1, status_code=0, status=transferred
[2026-03-01 07:28:56] 2026-03-01 12:28:28,460 | INFO     | stage-out finished correctly
[2026-03-01 07:28:56] 2026-03-01 12:28:29,352 | WARNING  | process 12293 can no longer be monitored (due to stat problems) - aborting
[2026-03-01 07:28:56] 2026-03-01 12:28:29,352 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7034442105/memory_monitor_summary.json (trf name=prmon)
[2026-03-01 07:28:56] 2026-03-01 12:28:29,437 | INFO     | number of running child processes to parent process 12293: 1
[2026-03-01 07:28:56] 2026-03-01 12:28:29,437 | INFO     | maximum number of monitored processes: 6
[2026-03-01 07:28:56] 2026-03-01 12:28:29,504 | INFO     | time since job start (4846s) is within the limit (349056.0s)
[2026-03-01 07:28:56] 2026-03-01 12:28:29,540 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-01 07:28:56] 2026-03-01 12:28:31,340 | INFO     | job 7034442105 has state=finished
[2026-03-01 07:28:56] 2026-03-01 12:28:31,341 | INFO     | preparing for final server update for job 7034442105 in state='finished'
[2026-03-01 07:28:56] 2026-03-01 12:28:31,459 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-03-01 07:28:56] 2026-03-01 12:28:31,459 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-7034442105/jobReport.json
[2026-03-01 07:28:56] 2026-03-01 12:28:31,461 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-03-01 07:28:56] 2026-03-01 12:28:31,461 | INFO     | this job has now completed (state=finished)
[2026-03-01 07:28:56] 2026-03-01 12:28:31,461 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-01 07:28:56] 2026-03-01 12:28:31,461 | INFO     | log transfer has been attempted: DONE
[2026-03-01 07:28:56] 2026-03-01 12:28:31,461 | INFO     | job 7034442105 has finished - writing final server update
[2026-03-01 07:28:56] 2026-03-01 12:28:31,462 | INFO     | total number of processed events: 400 (read)
[2026-03-01 07:28:56] 2026-03-01 12:28:31,463 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7034442105/memory_monitor_summary.json (trf name=prmon)
[2026-03-01 07:28:56] 2026-03-01 12:28:31,464 | INFO     | extracted standard info from prmon json
[2026-03-01 07:28:56] 2026-03-01 12:28:31,464 | INFO     | extracted standard memory fields from prmon json
[2026-03-01 07:28:56] 2026-03-01 12:28:31,464 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-01 07:28:56] 2026-03-01 12:28:31,464 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-01 07:28:56] 2026-03-01 12:28:31,464 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-01 07:28:56] 2026-03-01 12:28:31,466 | INFO     | fitting pss+swap vs Time
[2026-03-01 07:28:56] 2026-03-01 12:28:31,466 | INFO     | sum of square deviations: 115715658.0
[2026-03-01 07:28:56] 2026-03-01 12:28:31,466 | INFO     | sum of deviations: 2522940419.0
[2026-03-01 07:28:56] 2026-03-01 12:28:31,466 | INFO     | mean x: 1772365757.5
[2026-03-01 07:28:56] 2026-03-01 12:28:31,466 | INFO     | mean y: 2709132.75
[2026-03-01 07:28:56] 2026-03-01 12:28:31,467 | INFO     | intersect: -38640057837.026054
[2026-03-01 07:28:56] 2026-03-01 12:28:31,467 | INFO     | chi2: 0.033181087944761684
[2026-03-01 07:28:56] 2026-03-01 12:28:31,467 | INFO     | current memory leak: 21.80 B/s (using 72 data points, chi2=0.03)
[2026-03-01 07:28:56] 2026-03-01 12:28:31,467 | INFO     | could have reported an average CPU frequency of 1718 MHz (6 samples)
[2026-03-01 07:28:56] 2026-03-01 12:28:31,467 | INFO     | ..............................
[2026-03-01 07:28:56] 2026-03-01 12:28:31,467 | INFO     | . Timing measurements:
[2026-03-01 07:28:56] 2026-03-01 12:28:31,467 | INFO     | . get job = 0 s
[2026-03-01 07:28:56] 2026-03-01 12:28:31,468 | INFO     | . initial setup = 7 s
[2026-03-01 07:28:56] 2026-03-01 12:28:31,468 | INFO     | . payload setup = 7 s
[2026-03-01 07:28:56] 2026-03-01 12:28:31,468 | INFO     | . stage-in = 0 s
[2026-03-01 07:28:56] 2026-03-01 12:28:31,468 | INFO     | . payload execution = 4820 s
[2026-03-01 07:28:56] 2026-03-01 12:28:31,468 | INFO     | . stage-out = 0 s
[2026-03-01 07:28:56] 2026-03-01 12:28:31,468 | INFO     | . log creation = 0 s
[2026-03-01 07:28:56] 2026-03-01 12:28:31,468 | INFO     | ..............................
[2026-03-01 07:28:56] 2026-03-01 12:28:31,517 | INFO     | time since job start (4848s) is within the limit (349056.0s)
[2026-03-01 07:28:56] 2026-03-01 12:28:31,735 | INFO     | 
[2026-03-01 07:28:56] 2026-03-01 12:28:31,735 | INFO     | job summary report
[2026-03-01 07:28:56] 2026-03-01 12:28:31,735 | INFO     | --------------------------------------------------
[2026-03-01 07:28:56] 2026-03-01 12:28:31,736 | INFO     | PanDA job id: 7034442105
[2026-03-01 07:28:56] 2026-03-01 12:28:31,736 | INFO     | task id: 48838577
[2026-03-01 07:28:56] 2026-03-01 12:28:31,736 | INFO     | errors: (none)
[2026-03-01 07:28:56] 2026-03-01 12:28:31,736 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-01 07:28:56] 2026-03-01 12:28:31,736 | INFO     | pilot state: finished 
[2026-03-01 07:28:56] 2026-03-01 12:28:31,736 | INFO     | transexitcode: 0
[2026-03-01 07:28:56] 2026-03-01 12:28:31,737 | INFO     | exeerrorcode: 0
[2026-03-01 07:28:56] 2026-03-01 12:28:31,737 | INFO     | exeerrordiag: 
[2026-03-01 07:28:56] 2026-03-01 12:28:31,737 | INFO     | exitcode: 0
[2026-03-01 07:28:56] 2026-03-01 12:28:31,737 | INFO     | exitmsg: OK
[2026-03-01 07:28:56] 2026-03-01 12:28:31,737 | INFO     | cpuconsumptiontime: 52964 s
[2026-03-01 07:28:56] 2026-03-01 12:28:31,737 | INFO     | nevents: 400
[2026-03-01 07:28:56] 2026-03-01 12:28:31,737 | INFO     | neventsw: 0
[2026-03-01 07:28:56] 2026-03-01 12:28:31,738 | INFO     | pid: 12293
[2026-03-01 07:28:56] 2026-03-01 12:28:31,738 | INFO     | pgrp: 12293
[2026-03-01 07:28:56] 2026-03-01 12:28:31,738 | INFO     | corecount: 12
[2026-03-01 07:28:56] 2026-03-01 12:28:31,738 | INFO     | event service: False
[2026-03-01 07:28:56] 2026-03-01 12:28:31,738 | INFO     | sizes: {0: 2282217, 1: 2282277, 11: 2282305, 4831: 2308472, 4834: 2317470, 4835: 2317526, 4837: 2317848}
[2026-03-01 07:28:56] 2026-03-01 12:28:31,738 | INFO     | --------------------------------------------------
[2026-03-01 07:28:56] 2026-03-01 12:28:31,738 | INFO     | 
[2026-03-01 07:28:56] 2026-03-01 12:28:31,738 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-03-01 07:28:56] 2026-03-01 12:28:31,764 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-01 07:28:56] 2026-03-01 12:28:31,764 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-01 07:28:56] 2026-03-01 12:28:31,764 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-01 07:28:56] 2026-03-01 12:28:31,765 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-01 07:28:56] 2026-03-01 12:28:31,765 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-01 07:28:56] 2026-03-01 12:28:31,765 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-01 07:28:56] 2026-03-01 12:28:31,765 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-01 07:28:56] 2026-03-01 12:28:31,765 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-01 07:28:56] 2026-03-01 12:28:31,766 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-01 07:28:56] 2026-03-01 12:28:31,766 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-01 07:28:56] 2026-03-01 12:28:31,766 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-01 07:28:56] 2026-03-01 12:28:31,766 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-01 07:28:56] 2026-03-01 12:28:31,766 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-01 07:28:56] 2026-03-01 12:28:31,766 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-01 07:28:56] 2026-03-01 12:28:31,767 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-01 07:28:56] 2026-03-01 12:28:31,767 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-01 07:28:56] 2026-03-01 12:28:31,767 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-01 07:28:56] 2026-03-01 12:28:31,767 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-01 07:28:56] 2026-03-01 12:28:31,767 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-01 07:28:56] 2026-03-01 12:28:31,767 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-01 07:28:56] 2026-03-01 12:28:31,768 | INFO     | job 7034442105 has completed (purged errors)
[2026-03-01 07:28:56] 2026-03-01 12:28:31,768 | INFO     | overall cleanup function is called
[2026-03-01 07:28:56] 2026-03-01 12:28:32,776 | INFO     | --- collectZombieJob: --- 10, [12293]
[2026-03-01 07:28:56] 2026-03-01 12:28:32,776 | INFO     | zombie collector waiting for pid 12293
[2026-03-01 07:28:56] 2026-03-01 12:28:32,785 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-01 07:28:56] 2026-03-01 12:28:32,785 | INFO     | collected zombie processes
[2026-03-01 07:28:56] 2026-03-01 12:28:32,786 | INFO     | will attempt to kill all subprocesses of pid=12293
[2026-03-01 07:28:56] 2026-03-01 12:28:32,874 | INFO     | process IDs to be killed: [12293] (in reverse order)
[2026-03-01 07:28:56] 2026-03-01 12:28:32,925 | WARNING  | found no corresponding commands to process id(s)
[2026-03-01 07:28:56] 2026-03-01 12:28:32,925 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-01 07:28:56] 2026-03-01 12:28:32,929 | INFO     | did not find any defunct processes belonging to 12293
[2026-03-01 07:28:56] 2026-03-01 12:28:32,931 | INFO     | did not find any defunct processes belonging to 12293
[2026-03-01 07:28:56] 2026-03-01 12:28:32,931 | INFO     | ready for new job
[2026-03-01 07:28:56] 2026-03-01 12:28:32,931 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-01 07:28:56] 2026-03-01 12:28:32,932 | INFO     | **************************************
[2026-03-01 07:28:56] 2026-03-01 12:28:32,932 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-01 07:28:56] 2026-03-01 12:28:32,932 | INFO     | **************************************
[2026-03-01 07:28:56] 2026-03-01 12:28:32,933 | INFO     | 
[2026-03-01 07:28:56] 2026-03-01 12:28:32,933 | INFO     | architecture information:
[2026-03-01 07:28:56] 2026-03-01 12:28:32,934 | INFO     | executing command: cat /etc/os-release
[2026-03-01 07:28:56] 2026-03-01 12:28:32,949 | INFO     | cat /etc/os-release:
[2026-03-01 07:28:56] NAME="CentOS Linux"
[2026-03-01 07:28:56] VERSION="7 (Core)"
[2026-03-01 07:28:56] ID="centos"
[2026-03-01 07:28:56] ID_LIKE="rhel fedora"
[2026-03-01 07:28:56] VERSION_ID="7"
[2026-03-01 07:28:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-01 07:28:56] ANSI_COLOR="0;31"
[2026-03-01 07:28:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-01 07:28:56] HOME_URL="https://www.centos.org/"
[2026-03-01 07:28:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-01 07:28:56] 
[2026-03-01 07:28:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-01 07:28:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-01 07:28:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-01 07:28:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-01 07:28:56] 
[2026-03-01 07:28:56] 2026-03-01 12:28:32,949 | INFO     | **************************************
[2026-03-01 07:28:56] 2026-03-01 12:28:33,452 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-03-01 07:28:56] 2026-03-01 12:28:33,468 | INFO     | sufficient remaining disk space (29161947136 B)
[2026-03-01 07:28:56] 2026-03-01 12:28:33,469 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-01 07:28:56] 2026-03-01 12:28:33,469 | INFO     | current server update state: UPDATING_FINAL
[2026-03-01 07:28:56] 2026-03-01 12:28:33,469 | INFO     | update_server=False
[2026-03-01 07:28:56] 2026-03-01 12:28:33,469 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-01 07:28:56] 2026-03-01 12:28:33,470 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-01 07:28:56] 2026-03-01 12:28:33,470 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-01 07:28:56] 2026-03-01 12:28:33,470 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-01 07:28:56] 2026-03-01 12:28:33,471 | INFO     | found 0 job(s) in 20 queues
[2026-03-01 07:28:56] 2026-03-01 12:28:33,471 | INFO     | aborting loop
[2026-03-01 07:28:56] 2026-03-01 12:28:33,471 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-01 07:28:56] 2026-03-01 12:28:33,472 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-01 07:28:56] 2026-03-01 12:28:34,051 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-01 07:28:56] 2026-03-01 12:28:34,128 | INFO     | all payload control threads have been joined
[2026-03-01 07:28:56] 2026-03-01 12:28:34,357 | INFO     | all data control threads have been joined
[2026-03-01 07:28:56] 2026-03-01 12:28:34,474 | INFO     | [job] job monitor thread has finished
[2026-03-01 07:28:56] 2026-03-01 12:28:34,475 | INFO     | [job] retrieve thread has finished
[2026-03-01 07:28:56] 2026-03-01 12:28:34,476 | INFO     | [job] queue monitor thread has finished
[2026-03-01 07:28:56] 2026-03-01 12:28:34,602 | INFO     | [job] create_data_payload thread has finished
[2026-03-01 07:28:56] 2026-03-01 12:28:34,752 | INFO     | [payload] execute_payloads thread has finished
[2026-03-01 07:28:56] 2026-03-01 12:28:34,824 | INFO     | all job control threads have been joined
[2026-03-01 07:28:56] 2026-03-01 12:28:34,967 | INFO     | [payload] validate_pre thread has finished
[2026-03-01 07:28:56] 2026-03-01 12:28:35,123 | INFO     | [data] copytool_in thread has finished
[2026-03-01 07:28:56] 2026-03-01 12:28:35,133 | INFO     | [payload] control thread has finished
[2026-03-01 07:28:56] 2026-03-01 12:28:35,267 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-01 07:28:56] 2026-03-01 12:28:35,337 | INFO     | [payload] validate_post thread has finished
[2026-03-01 07:28:56] 2026-03-01 12:28:35,362 | INFO     | [data] control thread has finished
[2026-03-01 07:28:56] 2026-03-01 12:28:35,593 | INFO     | [payload] failed_post thread has finished
[2026-03-01 07:28:56] 2026-03-01 12:28:35,626 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-01 07:28:56] 2026-03-01 12:28:35,825 | INFO     | [job] control thread has finished
[2026-03-01 07:28:56] 2026-03-01 12:28:35,831 | INFO     | [job] validate thread has finished
[2026-03-01 07:28:56] 2026-03-01 12:28:36,056 | INFO     | [data] copytool_out thread has finished
[2026-03-01 07:28:56] 2026-03-01 12:28:39,632 | INFO     | [data] queue_monitor thread has finished
[2026-03-01 07:28:56] 2026-03-01 12:28:50,812 | INFO     | [monitor] cgroup control has ended
[2026-03-01 07:28:56] 2026-03-01 12:28:51,334 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139828446820160)>', '<ExcThread(monitor, started 139827987064576)>']
[2026-03-01 07:28:56] 2026-03-01 12:28:51,549 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-01 07:28:56] 2026-03-01 12:28:51,549 | INFO     | [monitor] control thread has ended
[2026-03-01 07:28:56] 2026-03-01 12:28:56,359 | INFO     | all workflow threads have been joined
[2026-03-01 07:28:56] 2026-03-01 12:28:56,366 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-01 07:28:56] 2026-03-01 12:28:56,366 | INFO     | traces error code: 0
[2026-03-01 07:28:56] 2026-03-01 12:28:56,366 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-01 07:28:56] 2026-03-01 12:28:56,447 [wrapper] ==== pilot stdout END ====
[2026-03-01 07:28:56] 2026-03-01 12:28:56,450 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-01 07:28:56] 2026-03-01 12:28:56,454 [wrapper] pilotpid: 7875
[2026-03-01 07:28:56] 2026-03-01 12:28:56,458 [wrapper] Pilot exit status: 0
[2026-03-01 07:28:56] 2026-03-01 12:28:56,474 [wrapper] pandaids: 7034442105
[2026-03-01 07:28:56] 2026-03-01 12:28:56,514 [wrapper] cleanup supervisor_pilot  2149 7876
[2026-03-01 07:28:56] 2026-03-01 12:28:56,518 [wrapper] Test setup, not cleaning
[2026-03-01 07:28:56] 2026-03-01 12:28:56,522 [wrapper] apfmon messages muted
[2026-03-01 07:28:56] 2026-03-01 12:28:56,526 [wrapper] ==== wrapper stdout END ====
[2026-03-01 07:28:56] 2026-03-01 12:28:56,530 [wrapper] ==== wrapper stderr END ====
[2026-03-01 07:28:56]  *** Error codes and diagnostics ***
[2026-03-01 07:28:56]     "exeErrorCode": 0,
[2026-03-01 07:28:56]     "exeErrorDiag": "",
[2026-03-01 07:28:56]     "pilotErrorCode": 0,
[2026-03-01 07:28:56]     "pilotErrorDiag": "",
[2026-03-01 07:28:56]  *** Listing of results directory ***
[2026-03-01 07:28:56] total 509152
[2026-03-01 07:28:56] -rw-r--r-- 1 boincer umatlas    584627 Mar  1 00:54 pilot3.tar.gz
[2026-03-01 07:28:56] -rwx------ 1 boincer umatlas     36322 Mar  1 00:56 runpilot2-wrapper.sh
[2026-03-01 07:28:56] -rw-r--r-- 1 boincer umatlas      5111 Mar  1 00:57 queuedata.json
[2026-03-01 07:28:56] -rw-r--r-- 1 boincer umatlas       100 Mar  1 06:07 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-01 07:28:56] -rwxr-xr-x 1 boincer umatlas      7986 Mar  1 06:07 run_atlas
[2026-03-01 07:28:56] -rw-r--r-- 1 boincer umatlas       105 Mar  1 06:07 job.xml
[2026-03-01 07:28:56] -rw-r--r-- 2 boincer umatlas 293404082 Mar  1 06:07 EVNT.48220197._000089.pool.root.1
[2026-03-01 07:28:56] -rw-r--r-- 2 boincer umatlas     15845 Mar  1 06:07 start_atlas.sh
[2026-03-01 07:28:56] drwxrwx--x 2 boincer umatlas      4096 Mar  1 06:07 shared
[2026-03-01 07:28:56] -rw-r--r-- 2 boincer umatlas    597978 Mar  1 06:07 input.tar.gz
[2026-03-01 07:28:56] -rw-r--r-- 1 boincer umatlas         0 Mar  1 06:07 boinc_lockfile
[2026-03-01 07:28:56] -rw-r--r-- 1 boincer umatlas      2566 Mar  1 06:07 pandaJob.out
[2026-03-01 07:28:56] -rw------- 1 boincer umatlas        57 Mar  1 06:07 setup.sh.local
[2026-03-01 07:28:56] -rw------- 1 boincer umatlas    998198 Mar  1 06:07 agis_schedconf.cvmfs.json
[2026-03-01 07:28:56] -rw------- 1 boincer umatlas   1513015 Mar  1 06:07 agis_ddmendpoints.agis.ALL.json
[2026-03-01 07:28:56] -rw------- 1 boincer umatlas       433 Mar  1 06:07 workernode_map.json
[2026-03-01 07:28:56] drwx------ 5 boincer umatlas      4096 Mar  1 06:07 pilot3
[2026-03-01 07:28:56] -rw-r--r-- 1 boincer umatlas      5953 Mar  1 07:21 init_data.xml
[2026-03-01 07:28:56] -rw------- 1 boincer umatlas        95 Mar  1 07:27 pilot_heartbeat.json
[2026-03-01 07:28:56] -rw------- 1 boincer umatlas 221843809 Mar  1 07:27 HITS.48838577._002317.pool.root.1
[2026-03-01 07:28:56] -rw-r--r-- 1 boincer umatlas        27 Mar  1 07:28 wrapper_checkpoint.txt
[2026-03-01 07:28:56] -rw------- 1 boincer umatlas      1045 Mar  1 07:28 memory_monitor_summary.json
[2026-03-01 07:28:56] -rw-r--r-- 1 boincer umatlas      8192 Mar  1 07:28 boinc_mmap_file
[2026-03-01 07:28:56] -rw-r--r-- 1 boincer umatlas       529 Mar  1 07:28 boinc_task_state.xml
[2026-03-01 07:28:56] -rw------- 1 boincer umatlas    393212 Mar  1 07:28 log.48838577._002317.job.log.tgz.1
[2026-03-01 07:28:56] -rw------- 1 boincer umatlas      6401 Mar  1 07:28 heartbeat.json
[2026-03-01 07:28:56] -rw------- 1 boincer umatlas      4548 Mar  1 07:28 pilotlog.txt
[2026-03-01 07:28:56] -rw------- 1 boincer umatlas    702147 Mar  1 07:28 log.48838577._002317.job.log.1
[2026-03-01 07:28:56] -rw------- 1 boincer umatlas       357 Mar  1 07:28 output.list
[2026-03-01 07:28:56] -rw-r--r-- 1 boincer umatlas       620 Mar  1 07:28 runtime_log
[2026-03-01 07:28:56] -rw------- 1 boincer umatlas   1116160 Mar  1 07:28 result.tar.gz
[2026-03-01 07:28:56] -rw------- 1 boincer umatlas       659 Mar  1 07:28 WcuNDmpxoG9n9Rq4apOajLDm4fhM0noT9bVooX4SDmZK7KDmPwOtyn.diag
[2026-03-01 07:28:56] -rw-r--r-- 1 boincer umatlas      9343 Mar  1 07:28 runtime_log.err
[2026-03-01 07:28:56] -rw-r--r-- 1 boincer umatlas     21317 Mar  1 07:28 stderr.txt
[2026-03-01 07:28:56] HITS file was successfully produced:
[2026-03-01 07:28:56] -rw------- 1 boincer umatlas 221843809 Mar  1 07:27 shared/HITS.pool.root.1
[2026-03-01 07:28:56]  *** Contents of shared directory: ***
[2026-03-01 07:28:56] total 504872
[2026-03-01 07:28:56] -rw-r--r-- 2 boincer umatlas 293404082 Mar  1 06:07 ATLAS.root_0
[2026-03-01 07:28:56] -rw-r--r-- 2 boincer umatlas     15845 Mar  1 06:07 start_atlas.sh
[2026-03-01 07:28:56] -rw-r--r-- 2 boincer umatlas    597978 Mar  1 06:07 input.tar.gz
[2026-03-01 07:28:56] -rw------- 1 boincer umatlas 221843809 Mar  1 07:27 HITS.pool.root.1
[2026-03-01 07:28:56] -rw------- 1 boincer umatlas   1116160 Mar  1 07:28 result.tar.gz
07:28:57 (4169): run_atlas exited; CPU time 52951.616927
07:28:57 (4169): called boinc_finish(0)

</stderr_txt>
]]>

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