Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:44:57 (383971): wrapper (7.7.26015): starting
04:44:57 (383971): wrapper: running run_atlas (--nthreads 4)
[2026-03-02 04:44:57] Arguments: --nthreads 4
[2026-03-02 04:44:57] Threads: 4
[2026-03-02 04:44:57] Checking for CVMFS
[2026-03-02 04:44:57] No cvmfs_config command found, will try listing directly
[2026-03-02 04:44:57] CVMFS is ok
[2026-03-02 04:44:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-02 04:44:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-02 04:44:57] Further information can be found at the LHC@home message board.
[2026-03-02 04:44:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-02 04:44:57] Checking for apptainer binary...
[2026-03-02 04:44:57] which: no apptainer in ((null))
[2026-03-02 04:44:57] apptainer is not installed, using version from CVMFS
[2026-03-02 04:44:57] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-02 04:44:57] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot132/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut19.grid.cesnet.cz
[2026-03-02 04:44:57] apptainer works
[2026-03-02 04:44:57] Set ATHENA_PROC_NUMBER=4
[2026-03-02 04:44:57] Set ATHENA_CORE_NUMBER=4
[2026-03-02 04:44:57] Starting ATLAS job with PandaID=7034075914
[2026-03-02 04:44:57] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot132/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-02 05:53:23]  *** The last 200 lines of the pilot log: ***
[2026-03-02 05:53:23]  is_tar=False
[2026-03-02 05:53:23]  lfn=log.48700930._000587.job.log.tgz.1
[2026-03-02 05:53:23]  mtime=0
[2026-03-02 05:53:23]  protocol_id=None
[2026-03-02 05:53:23]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-02 05:53:23]  replicas=None
[2026-03-02 05:53:23]  scope=mc23_13p6TeV
[2026-03-02 05:53:23]  status=None
[2026-03-02 05:53:23]  status_code=0
[2026-03-02 05:53:23]  storage_token=
[2026-03-02 05:53:23]  surl=/var/lib/boinc/var/slot132/slots/0/PanDA_Pilot-7034075914/log.48700930._000587.job.log.tgz.1
[2026-03-02 05:53:23]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bc/44/log.48700930._000587.job.log.tgz.1
[2026-03-02 05:53:23]  workdir=None
[2026-03-02 05:53:23] ]
[2026-03-02 05:53:23] 2026-03-02 04:52:31,097 | INFO     | transferring file log.48700930._000587.job.log.tgz.1 from /var/lib/boinc/var/slot132/slots/0/PanDA_Pilot-7034075914/log.48700930._000587.job.log.tgz.1 to /var/lib/
[2026-03-02 05:53:23] 2026-03-02 04:52:31,097 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot132/slots/0/PanDA_Pilot-7034075914/log.48700930._000587.job.log.tgz.1 /var/lib/boinc/var/slot132/slots/0/
[2026-03-02 05:53:23] 2026-03-02 04:52:31,115 | INFO     | adding to output.list: log.48700930._000587.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bc/44/log.48700930._000587.job.log.tg
[2026-03-02 05:53:23] 2026-03-02 04:52:31,115 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-02 05:53:23] 2026-03-02 04:52:31,115 | INFO     | summary of transferred files:
[2026-03-02 05:53:23] 2026-03-02 04:52:31,115 | INFO     |  -- lfn=log.48700930._000587.job.log.tgz.1, status_code=0, status=transferred
[2026-03-02 05:53:23] 2026-03-02 04:52:31,115 | INFO     | stage-out finished correctly
[2026-03-02 05:53:23] 2026-03-02 04:52:31,571 | INFO     | time since job start (4041s) is within the limit (349056.0s)
[2026-03-02 05:53:23] 2026-03-02 04:52:33,576 | INFO     | time since job start (4043s) is within the limit (349056.0s)
[2026-03-02 05:53:23] 2026-03-02 04:52:33,912 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-02 05:53:23] 2026-03-02 04:52:34,434 | WARNING  | process 394616 can no longer be monitored (due to stat problems) - aborting
[2026-03-02 05:53:23] 2026-03-02 04:52:34,434 | INFO     | using path: /var/lib/boinc/var/slot132/slots/0/PanDA_Pilot-7034075914/memory_monitor_summary.json (trf name=prmon)
[2026-03-02 05:53:23] 2026-03-02 04:52:35,417 | INFO     | number of running child processes to parent process 394616: 1
[2026-03-02 05:53:23] 2026-03-02 04:52:35,418 | INFO     | maximum number of monitored processes: 6
[2026-03-02 05:53:23] 2026-03-02 04:52:35,625 | INFO     | PID=388766 has CPU usage=15.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-02 05:53:23] 2026-03-02 04:52:35,625 | INFO     | .. there are 46 such processes running
[2026-03-02 05:53:23] 2026-03-02 04:52:36,265 | INFO     | job 7034075914 has state=finished
[2026-03-02 05:53:23] 2026-03-02 04:52:36,265 | INFO     | preparing for final server update for job 7034075914 in state='finished'
[2026-03-02 05:53:23] 2026-03-02 04:52:36,265 | INFO     | reading metadata from: /var/lib/boinc/var/slot132/slots/0/PanDA_Pilot-7034075914/jobReport.json
[2026-03-02 05:53:23] 2026-03-02 04:52:36,267 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot132/slots/0/workernode_map.json
[2026-03-02 05:53:23] 2026-03-02 04:52:36,267 | INFO     | this job has now completed (state=finished)
[2026-03-02 05:53:23] 2026-03-02 04:52:36,267 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-02 05:53:23] 2026-03-02 04:52:36,268 | INFO     | log transfer has been attempted: DONE
[2026-03-02 05:53:23] 2026-03-02 04:52:36,268 | INFO     | job 7034075914 has finished - writing final server update
[2026-03-02 05:53:23] 2026-03-02 04:52:36,268 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_202635/.job.ad'
[2026-03-02 05:53:23] 2026-03-02 04:52:36,268 | INFO     | total number of processed events: 400 (read)
[2026-03-02 05:53:23] 2026-03-02 04:52:36,286 | INFO     | using path: /var/lib/boinc/var/slot132/slots/0/PanDA_Pilot-7034075914/memory_monitor_summary.json (trf name=prmon)
[2026-03-02 05:53:23] 2026-03-02 04:52:36,287 | INFO     | extracted standard info from prmon json
[2026-03-02 05:53:23] 2026-03-02 04:52:36,287 | INFO     | extracted standard memory fields from prmon json
[2026-03-02 05:53:23] 2026-03-02 04:52:36,287 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-02 05:53:23] 2026-03-02 04:52:36,287 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-02 05:53:23] 2026-03-02 04:52:36,287 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-02 05:53:23] 2026-03-02 04:52:36,288 | INFO     | fitting pss+swap vs Time
[2026-03-02 05:53:23] 2026-03-02 04:52:36,288 | INFO     | sum of square deviations: 63666310.0
[2026-03-02 05:53:23] 2026-03-02 04:52:36,288 | INFO     | sum of deviations: 102572109.99999996
[2026-03-02 05:53:23] 2026-03-02 04:52:36,289 | INFO     | mean x: 1772425205.0
[2026-03-02 05:53:23] 2026-03-02 04:52:36,289 | INFO     | mean y: 2322741.084745763
[2026-03-02 05:53:23] 2026-03-02 04:52:36,289 | INFO     | intersect: -2853212519.1499443
[2026-03-02 05:53:23] 2026-03-02 04:52:36,289 | INFO     | chi2: 0.00020470540691246465
[2026-03-02 05:53:23] 2026-03-02 04:52:36,289 | INFO     | current memory leak: 1.61 B/s (using 59 data points, chi2=0.00)
[2026-03-02 05:53:23] 2026-03-02 04:52:36,289 | INFO     | could have reported an average CPU frequency of 3576 MHz (6 samples)
[2026-03-02 05:53:23] 2026-03-02 04:52:36,289 | INFO     | ..............................
[2026-03-02 05:53:23] 2026-03-02 04:52:36,289 | INFO     | . Timing measurements:
[2026-03-02 05:53:23] 2026-03-02 04:52:36,289 | INFO     | . get job = 0 s
[2026-03-02 05:53:23] 2026-03-02 04:52:36,289 | INFO     | . initial setup = 5 s
[2026-03-02 05:53:23] 2026-03-02 04:52:36,289 | INFO     | . payload setup = 5 s
[2026-03-02 05:53:23] 2026-03-02 04:52:36,289 | INFO     | . stage-in = 0 s
[2026-03-02 05:53:23] 2026-03-02 04:52:36,289 | INFO     | . payload execution = 4019 s
[2026-03-02 05:53:23] 2026-03-02 04:52:36,289 | INFO     | . stage-out = 0 s
[2026-03-02 05:53:23] 2026-03-02 04:52:36,289 | INFO     | . log creation = 0 s
[2026-03-02 05:53:23] 2026-03-02 04:52:36,289 | INFO     | ..............................
[2026-03-02 05:53:23] 2026-03-02 04:52:36,339 | INFO     | 
[2026-03-02 05:53:23] 2026-03-02 04:52:36,339 | INFO     | job summary report
[2026-03-02 05:53:23] 2026-03-02 04:52:36,339 | INFO     | --------------------------------------------------
[2026-03-02 05:53:23] 2026-03-02 04:52:36,339 | INFO     | PanDA job id: 7034075914
[2026-03-02 05:53:23] 2026-03-02 04:52:36,339 | INFO     | task id: 48700930
[2026-03-02 05:53:23] 2026-03-02 04:52:36,339 | INFO     | errors: (none)
[2026-03-02 05:53:23] 2026-03-02 04:52:36,339 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-02 05:53:23] 2026-03-02 04:52:36,339 | INFO     | pilot state: finished 
[2026-03-02 05:53:23] 2026-03-02 04:52:36,340 | INFO     | transexitcode: 0
[2026-03-02 05:53:23] 2026-03-02 04:52:36,340 | INFO     | exeerrorcode: 0
[2026-03-02 05:53:23] 2026-03-02 04:52:36,340 | INFO     | exeerrordiag: 
[2026-03-02 05:53:23] 2026-03-02 04:52:36,340 | INFO     | exitcode: 0
[2026-03-02 05:53:23] 2026-03-02 04:52:36,340 | INFO     | exitmsg: OK
[2026-03-02 05:53:23] 2026-03-02 04:52:36,340 | INFO     | cpuconsumptiontime: 15224 s
[2026-03-02 05:53:23] 2026-03-02 04:52:36,340 | INFO     | nevents: 400
[2026-03-02 05:53:23] 2026-03-02 04:52:36,340 | INFO     | neventsw: 0
[2026-03-02 05:53:23] 2026-03-02 04:52:36,340 | INFO     | pid: 394616
[2026-03-02 05:53:23] 2026-03-02 04:52:36,340 | INFO     | pgrp: 394616
[2026-03-02 05:53:23] 2026-03-02 04:52:36,340 | INFO     | corecount: 4
[2026-03-02 05:53:23] 2026-03-02 04:52:36,340 | INFO     | event service: False
[2026-03-02 05:53:23] 2026-03-02 04:52:36,340 | INFO     | sizes: {0: 2281788, 1: 2282249, 11: 2282249, 4028: 2308113, 4030: 2317135, 4033: 2317191, 4035: 2317513}
[2026-03-02 05:53:23] 2026-03-02 04:52:36,340 | INFO     | --------------------------------------------------
[2026-03-02 05:53:23] 2026-03-02 04:52:36,340 | INFO     | 
[2026-03-02 05:53:23] 2026-03-02 04:52:36,340 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot132/slots/0
[2026-03-02 05:53:23] 2026-03-02 04:52:36,357 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-02 05:53:23] 2026-03-02 04:52:36,357 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-02 05:53:23] 2026-03-02 04:52:36,357 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-02 05:53:23] 2026-03-02 04:52:36,357 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-02 05:53:23] 2026-03-02 04:52:36,357 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-02 05:53:23] 2026-03-02 04:52:36,357 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-02 05:53:23] 2026-03-02 04:52:36,357 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-02 05:53:23] 2026-03-02 04:52:36,357 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-02 05:53:23] 2026-03-02 04:52:36,358 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-02 05:53:23] 2026-03-02 04:52:36,358 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-02 05:53:23] 2026-03-02 04:52:36,358 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-02 05:53:23] 2026-03-02 04:52:36,358 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-02 05:53:23] 2026-03-02 04:52:36,358 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-02 05:53:23] 2026-03-02 04:52:36,358 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-02 05:53:23] 2026-03-02 04:52:36,358 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-02 05:53:23] 2026-03-02 04:52:36,358 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-02 05:53:23] 2026-03-02 04:52:36,358 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-02 05:53:23] 2026-03-02 04:52:36,358 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-02 05:53:23] 2026-03-02 04:52:36,358 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-02 05:53:23] 2026-03-02 04:52:36,358 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-02 05:53:23] 2026-03-02 04:52:36,358 | INFO     | job 7034075914 has completed (purged errors)
[2026-03-02 05:53:23] 2026-03-02 04:52:36,358 | INFO     | overall cleanup function is called
[2026-03-02 05:53:23] 2026-03-02 04:52:37,365 | INFO     | --- collectZombieJob: --- 10, [394616]
[2026-03-02 05:53:23] 2026-03-02 04:52:37,365 | INFO     | zombie collector waiting for pid 394616
[2026-03-02 05:53:23] 2026-03-02 04:52:37,365 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-02 05:53:23] 2026-03-02 04:52:37,365 | INFO     | collected zombie processes
[2026-03-02 05:53:23] 2026-03-02 04:52:37,365 | INFO     | will attempt to kill all subprocesses of pid=394616
[2026-03-02 05:53:23] 2026-03-02 04:52:37,834 | INFO     | process IDs to be killed: [394616] (in reverse order)
[2026-03-02 05:53:23] 2026-03-02 04:52:38,040 | WARNING  | found no corresponding commands to process id(s)
[2026-03-02 05:53:23] 2026-03-02 04:52:38,040 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-02 05:53:23] 2026-03-02 04:52:38,070 | INFO     | did not find any defunct processes belonging to 394616
[2026-03-02 05:53:23] 2026-03-02 04:52:38,098 | INFO     | did not find any defunct processes belonging to 394616
[2026-03-02 05:53:23] 2026-03-02 04:52:38,098 | INFO     | ready for new job
[2026-03-02 05:53:23] 2026-03-02 04:52:38,099 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-02 05:53:23] 2026-03-02 04:52:38,100 | INFO     | **************************************
[2026-03-02 05:53:23] 2026-03-02 04:52:38,100 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-02 05:53:23] 2026-03-02 04:52:38,100 | INFO     | **************************************
[2026-03-02 05:53:23] 2026-03-02 04:52:38,100 | INFO     | 
[2026-03-02 05:53:23] 2026-03-02 04:52:38,105 | INFO     | architecture information:
[2026-03-02 05:53:23] 2026-03-02 04:52:38,106 | INFO     | executing command: cat /etc/os-release
[2026-03-02 05:53:23] 2026-03-02 04:52:38,118 | INFO     | cat /etc/os-release:
[2026-03-02 05:53:23] NAME="CentOS Linux"
[2026-03-02 05:53:23] VERSION="7 (Core)"
[2026-03-02 05:53:23] ID="centos"
[2026-03-02 05:53:23] ID_LIKE="rhel fedora"
[2026-03-02 05:53:23] VERSION_ID="7"
[2026-03-02 05:53:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-02 05:53:23] ANSI_COLOR="0;31"
[2026-03-02 05:53:23] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-02 05:53:23] HOME_URL="https://www.centos.org/"
[2026-03-02 05:53:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-02 05:53:23] 
[2026-03-02 05:53:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-02 05:53:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-02 05:53:23] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-02 05:53:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-02 05:53:23] 
[2026-03-02 05:53:23] 2026-03-02 04:52:38,119 | INFO     | **************************************
[2026-03-02 05:53:23] 2026-03-02 04:52:38,621 | INFO     | executing command: df -mP /var/lib/boinc/var/slot132/slots/0
[2026-03-02 05:53:23] 2026-03-02 04:52:38,633 | INFO     | sufficient remaining disk space (22607298560 B)
[2026-03-02 05:53:23] 2026-03-02 04:52:38,634 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-02 05:53:23] 2026-03-02 04:52:38,634 | INFO     | current server update state: UPDATING_FINAL
[2026-03-02 05:53:23] 2026-03-02 04:52:38,634 | INFO     | update_server=False
[2026-03-02 05:53:23] 2026-03-02 04:52:38,634 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-02 05:53:23] 2026-03-02 04:52:38,922 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-02 05:53:23] 2026-03-02 04:52:38,922 | INFO     | aborting loop
[2026-03-02 05:53:23] 2026-03-02 04:52:39,187 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-02 05:53:23] 2026-03-02 04:52:39,639 | INFO     | [job] retrieve thread has finished
[2026-03-02 05:53:23] 2026-03-02 04:52:39,691 | INFO     | all data control threads have been joined
[2026-03-02 05:53:23] 2026-03-02 04:52:39,715 | INFO     | [payload] validate_post thread has finished
[2026-03-02 05:53:23] 2026-03-02 04:52:39,850 | INFO     | all payload control threads have been joined
[2026-03-02 05:53:23] 2026-03-02 04:52:39,927 | INFO     | [job] job monitor thread has finished
[2026-03-02 05:53:23] 2026-03-02 04:52:39,979 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-02 05:53:23] 2026-03-02 04:52:40,091 | INFO     | [job] validate thread has finished
[2026-03-02 05:53:23] 2026-03-02 04:52:40,124 | INFO     | [payload] failed_post thread has finished
[2026-03-02 05:53:23] 2026-03-02 04:52:40,215 | INFO     | [job] create_data_payload thread has finished
[2026-03-02 05:53:23] 2026-03-02 04:52:40,261 | INFO     | all job control threads have been joined
[2026-03-02 05:53:23] 2026-03-02 04:52:40,323 | INFO     | [payload] validate_pre thread has finished
[2026-03-02 05:53:23] 2026-03-02 04:52:40,548 | INFO     | [data] copytool_in thread has finished
[2026-03-02 05:53:23] 2026-03-02 04:52:40,570 | INFO     | [payload] execute_payloads thread has finished
[2026-03-02 05:53:23] 2026-03-02 04:52:40,696 | INFO     | [data] control thread has finished
[2026-03-02 05:53:23] 2026-03-02 04:52:40,855 | INFO     | [payload] control thread has finished
[2026-03-02 05:53:23] 2026-03-02 04:52:40,900 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-02 05:53:23] 2026-03-02 04:52:41,193 | INFO     | [data] copytool_out thread has finished
[2026-03-02 05:53:23] 2026-03-02 04:52:41,266 | INFO     | [job] control thread has finished
[2026-03-02 05:53:23] 2026-03-02 04:52:41,347 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-02 05:53:23] 2026-03-02 04:52:42,352 | INFO     | [job] queue monitor thread has finished
[2026-03-02 05:53:23] 2026-03-02 04:52:43,984 | INFO     | [data] queue_monitor thread has finished
[2026-03-02 05:53:23] 2026-03-02 04:53:08,248 | INFO     | PID=388766 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-02 05:53:23] 2026-03-02 04:53:08,249 | INFO     | .. there are 46 such processes running
[2026-03-02 05:53:23] 2026-03-02 04:53:08,249 | INFO     | found 0 job(s) in 20 queues
[2026-03-02 05:53:23] 2026-03-02 04:53:08,249 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-02 05:53:23] 2026-03-02 04:53:08,249 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-02 05:53:23] 2026-03-02 04:53:16,747 | INFO     | [monitor] cgroup control has ended
[2026-03-02 05:53:23] 2026-03-02 04:53:17,992 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23147935123264)>', '<ExcThread(monitor, started 23147681396480)>']
[2026-03-02 05:53:23] 2026-03-02 04:53:18,299 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-02 05:53:23] 2026-03-02 04:53:18,299 | INFO     | [monitor] control thread has ended
[2026-03-02 05:53:23] 2026-03-02 04:53:23,017 | INFO     | all workflow threads have been joined
[2026-03-02 05:53:23] 2026-03-02 04:53:23,017 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-02 05:53:23] 2026-03-02 04:53:23,017 | INFO     | traces error code: 0
[2026-03-02 05:53:23] 2026-03-02 04:53:23,017 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-02 05:53:23] 2026-03-02 04:53:23,230 [wrapper] ==== pilot stdout END ====
[2026-03-02 05:53:23] 2026-03-02 04:53:23,232 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-02 05:53:23] 2026-03-02 04:53:23,234 [wrapper] pilotpid: 388766
[2026-03-02 05:53:23] 2026-03-02 04:53:23,237 [wrapper] Pilot exit status: 0
[2026-03-02 05:53:23] 2026-03-02 04:53:23,244 [wrapper] pandaids: 7034075914
[2026-03-02 05:53:23] 2026-03-02 04:53:23,377 [wrapper] cleanup supervisor_pilot 1030739 388767
[2026-03-02 05:53:23] 2026-03-02 04:53:23,380 [wrapper] Test setup, not cleaning
[2026-03-02 05:53:23] 2026-03-02 04:53:23,382 [wrapper] apfmon messages muted
[2026-03-02 05:53:23] 2026-03-02 04:53:23,383 [wrapper] ==== wrapper stdout END ====
[2026-03-02 05:53:23] 2026-03-02 04:53:23,386 [wrapper] ==== wrapper stderr END ====
[2026-03-02 05:53:23]  *** Error codes and diagnostics ***
[2026-03-02 05:53:23]     "exeErrorCode": 0,
[2026-03-02 05:53:23]     "exeErrorDiag": "",
[2026-03-02 05:53:23]     "pilotErrorCode": 0,
[2026-03-02 05:53:23]     "pilotErrorDiag": "",
[2026-03-02 05:53:23]  *** Listing of results directory ***
[2026-03-02 05:53:23] total 333596
[2026-03-02 05:53:23] -rw-r--r--. 1 boinc boinc    584627 Mar  1 01:35 pilot3.tar.gz
[2026-03-02 05:53:23] -rwx------. 1 boinc boinc     36322 Mar  1 01:36 runpilot2-wrapper.sh
[2026-03-02 05:53:23] -rw-r--r--. 1 boinc boinc      5111 Mar  1 01:37 queuedata.json
[2026-03-02 05:53:23] -rw-r--r--. 1 boinc boinc       100 Mar  2 04:44 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-02 05:53:23] -rwxr-xr-x. 1 boinc boinc      7986 Mar  2 04:44 run_atlas
[2026-03-02 05:53:23] -rw-r--r--. 1 boinc boinc       105 Mar  2 04:44 job.xml
[2026-03-02 05:53:23] -rw-r--r--. 1 boinc boinc      6706 Mar  2 04:44 init_data.xml
[2026-03-02 05:53:23] -rw-r--r--. 2 boinc boinc 187137954 Mar  2 04:44 EVNT.48700928._000024.pool.root.1
[2026-03-02 05:53:23] -rw-r--r--. 2 boinc boinc     15845 Mar  2 04:44 start_atlas.sh
[2026-03-02 05:53:23] drwxrwx--x. 2 boinc boinc      4096 Mar  2 04:44 shared
[2026-03-02 05:53:23] -rw-r--r--. 2 boinc boinc    597949 Mar  2 04:44 input.tar.gz
[2026-03-02 05:53:23] -rw-r--r--. 1 boinc boinc         0 Mar  2 04:44 boinc_lockfile
[2026-03-02 05:53:23] -rw-r--r--. 1 boinc boinc      2516 Mar  2 04:44 pandaJob.out
[2026-03-02 05:53:23] -rw-------. 1 boinc boinc    998242 Mar  2 04:45 agis_schedconf.cvmfs.json
[2026-03-02 05:53:23] -rw-------. 1 boinc boinc   1513015 Mar  2 04:45 agis_ddmendpoints.agis.ALL.json
[2026-03-02 05:53:23] -rw-------. 1 boinc boinc       445 Mar  2 04:45 workernode_map.json
[2026-03-02 05:53:23] drwx------. 5 boinc boinc      4096 Mar  2 04:45 pilot3
[2026-03-02 05:53:23] -rw-------. 1 boinc boinc 148832772 Mar  2 05:52 HITS.48700930._000587.pool.root.1
[2026-03-02 05:53:23] -rw-r--r--. 1 boinc boinc       529 Mar  2 05:52 boinc_task_state.xml
[2026-03-02 05:53:23] -rw-------. 1 boinc boinc      1030 Mar  2 05:52 memory_monitor_summary.json
[2026-03-02 05:53:23] -rw-------. 1 boinc boinc    247562 Mar  2 05:52 log.48700930._000587.job.log.tgz.1
[2026-03-02 05:53:23] -rw-------. 1 boinc boinc        95 Mar  2 05:52 pilot_heartbeat.json
[2026-03-02 05:53:23] -rw-------. 1 boinc boinc      6344 Mar  2 05:52 heartbeat.json
[2026-03-02 05:53:23] -rw-r--r--. 1 boinc boinc      8192 Mar  2 05:53 boinc_mmap_file
[2026-03-02 05:53:23] -rw-r--r--. 1 boinc boinc        27 Mar  2 05:53 wrapper_checkpoint.txt
[2026-03-02 05:53:23] -rw-------. 1 boinc boinc      4829 Mar  2 05:53 pilotlog.txt
[2026-03-02 05:53:23] -rw-------. 1 boinc boinc    601852 Mar  2 05:53 log.48700930._000587.job.log.1
[2026-03-02 05:53:23] -rw-------. 1 boinc boinc       357 Mar  2 05:53 output.list
[2026-03-02 05:53:23] -rw-r--r--. 1 boinc boinc       620 Mar  2 05:53 runtime_log
[2026-03-02 05:53:23] -rw-------. 1 boinc boinc    870400 Mar  2 05:53 result.tar.gz
[2026-03-02 05:53:23] -rw-r--r--. 1 boinc boinc      9221 Mar  2 05:53 runtime_log.err
[2026-03-02 05:53:23] -rw-------. 1 boinc boinc       662 Mar  2 05:53 LyVNDmayjG9n9Rq4apOajLDm4fhM0noT9bVooX4SDm5i6KDm0Ubomn.diag
[2026-03-02 05:53:23] -rw-r--r--. 1 boinc boinc     21557 Mar  2 05:53 stderr.txt
[2026-03-02 05:53:23] HITS file was successfully produced:
[2026-03-02 05:53:23] -rw-------. 1 boinc boinc 148832772 Mar  2 05:52 shared/HITS.pool.root.1
[2026-03-02 05:53:23]  *** Contents of shared directory: ***
[2026-03-02 05:53:23] total 329560
[2026-03-02 05:53:23] -rw-r--r--. 2 boinc boinc 187137954 Mar  2 04:44 ATLAS.root_0
[2026-03-02 05:53:23] -rw-r--r--. 2 boinc boinc     15845 Mar  2 04:44 start_atlas.sh
[2026-03-02 05:53:23] -rw-r--r--. 2 boinc boinc    597949 Mar  2 04:44 input.tar.gz
[2026-03-02 05:53:23] -rw-------. 1 boinc boinc 148832772 Mar  2 05:52 HITS.pool.root.1
[2026-03-02 05:53:23] -rw-------. 1 boinc boinc    870400 Mar  2 05:53 result.tar.gz
05:53:24 (383971): run_atlas exited; CPU time 15389.614833
05:53:24 (383971): called boinc_finish(0)

</stderr_txt>
]]>

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