Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:52:10 (918464): wrapper (7.7.26015): starting
21:52:10 (918464): wrapper: running run_atlas (--nthreads 4)
[2026-03-01 21:52:10] Arguments: --nthreads 4
[2026-03-01 21:52:10] Threads: 4
[2026-03-01 21:52:10] Checking for CVMFS
[2026-03-01 21:52:10] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-01 21:52:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-01 21:52:10] Running cvmfs_config stat atlas.cern.ch
[2026-03-01 21:52:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-01 21:52:10] 2.9.2.0 39204 6055 98064 156782 2 50 25327314 36864000 0 130560 0 2451573 99.982 243826 14397 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-01 21:52:10] CVMFS is ok
[2026-03-01 21:52:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-01 21:52:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-01 21:52:10] Further information can be found at the LHC@home message board.
[2026-03-01 21:52:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-01 21:52:10] Checking for apptainer binary...
[2026-03-01 21:52:10] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-01 21:52:10] Running /usr/bin/apptainer --version
[2026-03-01 21:52:10] apptainer version 1.4.1-1.1
[2026-03-01 21:52:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-01 21:52:10] madmaxA277
[2026-03-01 21:52:10] apptainer works
[2026-03-01 21:52:10] Set ATHENA_PROC_NUMBER=4
[2026-03-01 21:52:10] Set ATHENA_CORE_NUMBER=4
[2026-03-01 21:52:10] Starting ATLAS job with PandaID=7034331505
[2026-03-01 21:52:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-01 22:50:42]  *** The last 200 lines of the pilot log: ***
[2026-03-01 22:50:42] 2026-03-01 21:50:23,429 | INFO     | --- collectZombieJob: --- 10, [927084]
[2026-03-01 22:50:42] 2026-03-01 21:50:23,430 | INFO     | zombie collector waiting for pid 927084
[2026-03-01 22:50:42] 2026-03-01 21:50:23,430 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-01 22:50:42] 2026-03-01 21:50:23,430 | INFO     | collected zombie processes
[2026-03-01 22:50:42] 2026-03-01 21:50:23,430 | INFO     | will attempt to kill all subprocesses of pid=927084
[2026-03-01 22:50:42] 2026-03-01 21:50:23,471 | INFO     | process IDs to be killed: [927084] (in reverse order)
[2026-03-01 22:50:42] 2026-03-01 21:50:23,504 | WARNING  | found no corresponding commands to process id(s)
[2026-03-01 22:50:42] 2026-03-01 21:50:23,505 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-01 22:50:42] 2026-03-01 21:50:23,506 | INFO     | did not find any defunct processes belonging to 927084
[2026-03-01 22:50:42] 2026-03-01 21:50:23,507 | INFO     | did not find any defunct processes belonging to 927084
[2026-03-01 22:50:42] 2026-03-01 21:50:23,508 | INFO     | ready for new job
[2026-03-01 22:50:42] 2026-03-01 21:50:23,508 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-01 22:50:42] 2026-03-01 21:50:23,508 | INFO     | **************************************
[2026-03-01 22:50:42] 2026-03-01 21:50:23,508 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-01 22:50:42] 2026-03-01 21:50:23,508 | INFO     | **************************************
[2026-03-01 22:50:42] 2026-03-01 21:50:23,508 | INFO     | 
[2026-03-01 22:50:42] 2026-03-01 21:50:23,509 | INFO     | architecture information:
[2026-03-01 22:50:42] 2026-03-01 21:50:23,509 | INFO     | executing command: cat /etc/os-release
[2026-03-01 22:50:42] 2026-03-01 21:50:23,524 | INFO     | cat /etc/os-release:
[2026-03-01 22:50:42] NAME="CentOS Linux"
[2026-03-01 22:50:42] VERSION="7 (Core)"
[2026-03-01 22:50:42] ID="centos"
[2026-03-01 22:50:42] ID_LIKE="rhel fedora"
[2026-03-01 22:50:42] VERSION_ID="7"
[2026-03-01 22:50:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-01 22:50:42] ANSI_COLOR="0;31"
[2026-03-01 22:50:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-01 22:50:42] HOME_URL="https://www.centos.org/"
[2026-03-01 22:50:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-01 22:50:42] 
[2026-03-01 22:50:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-01 22:50:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-01 22:50:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-01 22:50:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-01 22:50:42] 
[2026-03-01 22:50:42] 2026-03-01 21:50:23,524 | INFO     | **************************************
[2026-03-01 22:50:42] 2026-03-01 21:50:24,027 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-01 22:50:42] 2026-03-01 21:50:24,045 | INFO     | sufficient remaining disk space (334096236544 B)
[2026-03-01 22:50:42] 2026-03-01 21:50:24,046 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-01 22:50:42] 2026-03-01 21:50:24,046 | INFO     | current server update state: UPDATING_FINAL
[2026-03-01 22:50:42] 2026-03-01 21:50:24,046 | INFO     | update_server=False
[2026-03-01 22:50:42] 2026-03-01 21:50:24,046 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-01 22:50:42] 2026-03-01 21:50:24,046 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-01 22:50:42] 2026-03-01 21:50:24,046 | INFO     | found 0 job(s) in 20 queues
[2026-03-01 22:50:42] 2026-03-01 21:50:24,046 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-01 22:50:42] 2026-03-01 21:50:24,046 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-01 22:50:42] 2026-03-01 21:50:24,046 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-01 22:50:42] 2026-03-01 21:50:24,046 | INFO     | aborting loop
[2026-03-01 22:50:42] 2026-03-01 21:50:24,047 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-01 22:50:42] 2026-03-01 21:50:24,047 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-01 22:50:42] 2026-03-01 21:50:24,372 | INFO     | all job control threads have been joined
[2026-03-01 22:50:42] 2026-03-01 21:50:25,051 | INFO     | [job] retrieve thread has finished
[2026-03-01 22:50:42] 2026-03-01 21:50:25,052 | INFO     | [job] job monitor thread has finished
[2026-03-01 22:50:42] 2026-03-01 21:50:25,052 | INFO     | [job] queue monitor thread has finished
[2026-03-01 22:50:42] 2026-03-01 21:50:25,072 | INFO     | all data control threads have been joined
[2026-03-01 22:50:42] 2026-03-01 21:50:25,073 | INFO     | [payload] validate_post thread has finished
[2026-03-01 22:50:42] 2026-03-01 21:50:25,091 | INFO     | [data] copytool_in thread has finished
[2026-03-01 22:50:42] 2026-03-01 21:50:25,136 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-01 22:50:42] 2026-03-01 21:50:25,340 | INFO     | all payload control threads have been joined
[2026-03-01 22:50:42] 2026-03-01 21:50:25,378 | INFO     | [job] control thread has finished
[2026-03-01 22:50:42] 2026-03-01 21:50:25,648 | INFO     | [payload] execute_payloads thread has finished
[2026-03-01 22:50:42] 2026-03-01 21:50:26,078 | INFO     | [data] control thread has finished
[2026-03-01 22:50:42] 2026-03-01 21:50:26,142 | INFO     | [payload] failed_post thread has finished
[2026-03-01 22:50:42] 2026-03-01 21:50:26,274 | INFO     | [job] validate thread has finished
[2026-03-01 22:50:42] 2026-03-01 21:50:26,346 | INFO     | [payload] control thread has finished
[2026-03-01 22:50:42] 2026-03-01 21:50:26,372 | INFO     | [job] create_data_payload thread has finished
[2026-03-01 22:50:42] 2026-03-01 21:50:26,444 | INFO     | [payload] validate_pre thread has finished
[2026-03-01 22:50:42] 2026-03-01 21:50:27,070 | INFO     | [monitor] cgroup control has ended
[2026-03-01 22:50:42] 2026-03-01 21:50:27,143 | INFO     | [data] copytool_out thread has finished
[2026-03-01 22:50:42] 2026-03-01 21:50:28,054 | INFO     | [data] queue_monitor thread has finished
[2026-03-01 22:50:42] 2026-03-01 21:50:34,924 | INFO     | job.realtimelogging is not enabled
[2026-03-01 22:50:42] 2026-03-01 21:50:35,930 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-01 22:50:42] 2026-03-01 21:50:37,390 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140562932307776)>', '<ExcThread(monitor, started 140562426472192)>']
[2026-03-01 22:50:42] 2026-03-01 21:50:38,121 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-01 22:50:42] 2026-03-01 21:50:38,122 | INFO     | [monitor] control thread has ended
[2026-03-01 22:50:42] 2026-03-01 21:50:42,406 | INFO     | all workflow threads have been joined
[2026-03-01 22:50:42] 2026-03-01 21:50:42,406 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-01 22:50:42] 2026-03-01 21:50:42,406 | INFO     | traces error code: 0
[2026-03-01 22:50:42] 2026-03-01 21:50:42,406 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-01 22:50:42] 2026-03-01 21:50:42,485 [wrapper] ==== pilot stdout END ====
[2026-03-01 22:50:42] 2026-03-01 21:50:42,489 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-01 22:50:42] 2026-03-01 21:50:42,493 [wrapper] pilotpid: 922568
[2026-03-01 22:50:42] 2026-03-01 21:50:42,497 [wrapper] Pilot exit status: 0
[2026-03-01 22:50:42] 2026-03-01 21:50:42,510 [wrapper] pandaids: 7034331505
[2026-03-01 22:50:42] 2026-03-01 21:50:42,531 [wrapper] cleanup supervisor_pilot  932347 922569
[2026-03-01 22:50:42] 2026-03-01 21:50:42,535 [wrapper] Test setup, not cleaning
[2026-03-01 22:50:42] 2026-03-01 21:50:42,539 [wrapper] apfmon messages muted
[2026-03-01 22:50:42] 2026-03-01 21:50:42,543 [wrapper] ==== wrapper stdout END ====
[2026-03-01 22:50:42] 2026-03-01 21:50:42,547 [wrapper] ==== wrapper stderr END ====
[2026-03-01 22:50:42]  *** Error codes and diagnostics ***
[2026-03-01 22:50:42]     "exeErrorCode": 0,
[2026-03-01 22:50:42]     "exeErrorDiag": "",
[2026-03-01 22:50:42]     "pilotErrorCode": 0,
[2026-03-01 22:50:42]     "pilotErrorDiag": "",
[2026-03-01 22:50:42]  *** Listing of results directory ***
[2026-03-01 22:50:42] total 340404
[2026-03-01 22:50:42] -rw-r--r-- 1 boinc boinc    584627 Mar  1 05:23 pilot3.tar.gz
[2026-03-01 22:50:42] -rwx------ 1 boinc boinc     36322 Mar  1 05:23 runpilot2-wrapper.sh
[2026-03-01 22:50:42] -rw-r--r-- 1 boinc boinc      5111 Mar  1 05:24 queuedata.json
[2026-03-01 22:50:42] -rw-r--r-- 1 boinc boinc       100 Mar  1 21:52 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-01 22:50:42] -rwxr-xr-x 1 boinc boinc      7986 Mar  1 21:52 run_atlas
[2026-03-01 22:50:42] -rw-r--r-- 1 boinc boinc       105 Mar  1 21:52 job.xml
[2026-03-01 22:50:42] -rw-r--r-- 2 boinc boinc 193046891 Mar  1 21:52 EVNT.48700904._000043.pool.root.1
[2026-03-01 22:50:42] -rw-r--r-- 2 boinc boinc    597940 Mar  1 21:52 input.tar.gz
[2026-03-01 22:50:42] -rw-r--r-- 2 boinc boinc     15845 Mar  1 21:52 start_atlas.sh
[2026-03-01 22:50:42] drwxrwx--x 2 boinc boinc      4096 Mar  1 21:52 shared
[2026-03-01 22:50:42] -rw-r--r-- 1 boinc boinc         0 Mar  1 21:52 boinc_setup_complete
[2026-03-01 22:50:42] -rw-r--r-- 1 boinc boinc      6372 Mar  1 21:52 init_data.xml
[2026-03-01 22:50:42] -rw-r--r-- 1 boinc boinc         0 Mar  1 21:52 boinc_lockfile
[2026-03-01 22:50:42] -rw-r--r-- 1 boinc boinc      2519 Mar  1 21:52 pandaJob.out
[2026-03-01 22:50:42] -rw------- 1 boinc boinc    998184 Mar  1 21:52 agis_schedconf.cvmfs.json
[2026-03-01 22:50:42] -rw------- 1 boinc boinc   1513015 Mar  1 21:52 agis_ddmendpoints.agis.ALL.json
[2026-03-01 22:50:42] -rw------- 1 boinc boinc       425 Mar  1 21:52 workernode_map.json
[2026-03-01 22:50:42] drwx------ 5 boinc boinc      4096 Mar  1 21:52 pilot3
[2026-03-01 22:50:42] -rw------- 1 boinc boinc        95 Mar  1 22:49 pilot_heartbeat.json
[2026-03-01 22:50:42] -rw------- 1 boinc boinc 150052194 Mar  1 22:50 HITS.48700906._001073.pool.root.1
[2026-03-01 22:50:42] -rw-r--r-- 1 boinc boinc       529 Mar  1 22:50 boinc_task_state.xml
[2026-03-01 22:50:42] -rw------- 1 boinc boinc      1016 Mar  1 22:50 memory_monitor_summary.json
[2026-03-01 22:50:42] -rw------- 1 boinc boinc    261173 Mar  1 22:50 log.48700906._001073.job.log.tgz.1
[2026-03-01 22:50:42] -rw------- 1 boinc boinc      6312 Mar  1 22:50 heartbeat.json
[2026-03-01 22:50:42] -rw-r--r-- 1 boinc boinc      8192 Mar  1 22:50 boinc_mmap_file
[2026-03-01 22:50:42] -rw-r--r-- 1 boinc boinc        27 Mar  1 22:50 wrapper_checkpoint.txt
[2026-03-01 22:50:42] -rw------- 1 boinc boinc      4624 Mar  1 22:50 pilotlog.txt
[2026-03-01 22:50:42] -rw------- 1 boinc boinc    524182 Mar  1 22:50 log.48700906._001073.job.log.1
[2026-03-01 22:50:42] -rw------- 1 boinc boinc       357 Mar  1 22:50 output.list
[2026-03-01 22:50:42] -rw-r--r-- 1 boinc boinc       620 Mar  1 22:50 runtime_log
[2026-03-01 22:50:42] -rw------- 1 boinc boinc    798720 Mar  1 22:50 result.tar.gz
[2026-03-01 22:50:42] -rw-r--r-- 1 boinc boinc      8916 Mar  1 22:50 runtime_log.err
[2026-03-01 22:50:42] -rw------- 1 boinc boinc       661 Mar  1 22:50 JxMMDmBWnG9n9Rq4apOajLDm4fhM0noT9bVooX4SDmj26KDmg9sb2m.diag
[2026-03-01 22:50:42] -rw-r--r-- 1 boinc boinc     10619 Mar  1 22:50 stderr.txt
[2026-03-01 22:50:42] HITS file was successfully produced:
[2026-03-01 22:50:42] -rw------- 1 boinc boinc 150052194 Mar  1 22:50 shared/HITS.pool.root.1
[2026-03-01 22:50:42]  *** Contents of shared directory: ***
[2026-03-01 22:50:42] total 336444
[2026-03-01 22:50:42] -rw-r--r-- 2 boinc boinc 193046891 Mar  1 21:52 ATLAS.root_0
[2026-03-01 22:50:42] -rw-r--r-- 2 boinc boinc    597940 Mar  1 21:52 input.tar.gz
[2026-03-01 22:50:42] -rw-r--r-- 2 boinc boinc     15845 Mar  1 21:52 start_atlas.sh
[2026-03-01 22:50:42] -rw------- 1 boinc boinc 150052194 Mar  1 22:50 HITS.pool.root.1
[2026-03-01 22:50:42] -rw------- 1 boinc boinc    798720 Mar  1 22:50 result.tar.gz
22:50:44 (918464): run_atlas exited; CPU time 12743.167801
22:50:44 (918464): called boinc_finish(0)

</stderr_txt>
]]>

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