Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:43:16 (3651069): wrapper (7.7.26015): starting
11:43:16 (3651069): wrapper: running run_atlas (--nthreads 3)
[2026-03-01 11:43:16] Arguments: --nthreads 3
[2026-03-01 11:43:16] Threads: 3
[2026-03-01 11:43:16] Checking for CVMFS
[2026-03-01 11:43:16] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-01 11:43:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-01 11:43:17] Running cvmfs_config stat atlas.cern.ch
[2026-03-01 11:43:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-01 11:43:17] 2.9.2.0 2914701 5378 82688 156766 2 50 17944083 36864001 0 130560 0 2054951 99.980 218385 7117 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-01 11:43:17] CVMFS is ok
[2026-03-01 11:43:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-01 11:43:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-01 11:43:17] Further information can be found at the LHC@home message board.
[2026-03-01 11:43:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-01 11:43:17] Checking for apptainer binary...
[2026-03-01 11:43:17] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-01 11:43:17] Running /usr/bin/apptainer --version
[2026-03-01 11:43:17] apptainer version 1.4.1-1.1
[2026-03-01 11:43:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-01 11:43:17] thA330a
[2026-03-01 11:43:17] apptainer works
[2026-03-01 11:43:17] Set ATHENA_PROC_NUMBER=3
[2026-03-01 11:43:17] Set ATHENA_CORE_NUMBER=3
[2026-03-01 11:43:17] Starting ATLAS job with PandaID=7034441717
[2026-03-01 11:43:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-01 13:18:38]  *** The last 200 lines of the pilot log: ***
[2026-03-01 13:18:38] 2026-03-01 12:18:04,993 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-01 13:18:38] 2026-03-01 12:18:04,993 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-01 13:18:38] 2026-03-01 12:18:04,993 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-01 13:18:38] 2026-03-01 12:18:04,993 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-01 13:18:38] 2026-03-01 12:18:04,993 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-01 13:18:38] 2026-03-01 12:18:04,993 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-01 13:18:38] 2026-03-01 12:18:04,993 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-01 13:18:38] 2026-03-01 12:18:04,994 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-01 13:18:38] 2026-03-01 12:18:04,994 | INFO     | job 7034441717 has completed (purged errors)
[2026-03-01 13:18:38] 2026-03-01 12:18:04,994 | INFO     | overall cleanup function is called
[2026-03-01 13:18:38] 2026-03-01 12:18:06,000 | INFO     | --- collectZombieJob: --- 10, [3659534]
[2026-03-01 13:18:38] 2026-03-01 12:18:06,000 | INFO     | zombie collector waiting for pid 3659534
[2026-03-01 13:18:38] 2026-03-01 12:18:06,000 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-01 13:18:38] 2026-03-01 12:18:06,000 | INFO     | collected zombie processes
[2026-03-01 13:18:38] 2026-03-01 12:18:06,000 | INFO     | will attempt to kill all subprocesses of pid=3659534
[2026-03-01 13:18:38] 2026-03-01 12:18:06,044 | INFO     | process IDs to be killed: [3659534] (in reverse order)
[2026-03-01 13:18:38] 2026-03-01 12:18:06,068 | WARNING  | found no corresponding commands to process id(s)
[2026-03-01 13:18:38] 2026-03-01 12:18:06,068 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-01 13:18:38] 2026-03-01 12:18:06,070 | INFO     | did not find any defunct processes belonging to 3659534
[2026-03-01 13:18:38] 2026-03-01 12:18:06,071 | INFO     | did not find any defunct processes belonging to 3659534
[2026-03-01 13:18:38] 2026-03-01 12:18:06,071 | INFO     | ready for new job
[2026-03-01 13:18:38] 2026-03-01 12:18:06,071 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-01 13:18:38] 2026-03-01 12:18:06,072 | INFO     | **************************************
[2026-03-01 13:18:38] 2026-03-01 12:18:06,072 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-01 13:18:38] 2026-03-01 12:18:06,072 | INFO     | **************************************
[2026-03-01 13:18:38] 2026-03-01 12:18:06,072 | INFO     | 
[2026-03-01 13:18:38] 2026-03-01 12:18:06,072 | INFO     | architecture information:
[2026-03-01 13:18:38] 2026-03-01 12:18:06,072 | INFO     | executing command: cat /etc/os-release
[2026-03-01 13:18:38] 2026-03-01 12:18:06,081 | INFO     | cat /etc/os-release:
[2026-03-01 13:18:38] NAME="CentOS Linux"
[2026-03-01 13:18:38] VERSION="7 (Core)"
[2026-03-01 13:18:38] ID="centos"
[2026-03-01 13:18:38] ID_LIKE="rhel fedora"
[2026-03-01 13:18:38] VERSION_ID="7"
[2026-03-01 13:18:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-01 13:18:38] ANSI_COLOR="0;31"
[2026-03-01 13:18:38] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-01 13:18:38] HOME_URL="https://www.centos.org/"
[2026-03-01 13:18:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-01 13:18:38] 
[2026-03-01 13:18:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-01 13:18:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-01 13:18:38] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-01 13:18:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-01 13:18:38] 
[2026-03-01 13:18:38] 2026-03-01 12:18:06,081 | INFO     | **************************************
[2026-03-01 13:18:38] 2026-03-01 12:18:06,584 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-01 13:18:38] 2026-03-01 12:18:06,597 | INFO     | sufficient remaining disk space (243477250048 B)
[2026-03-01 13:18:38] 2026-03-01 12:18:06,597 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-01 13:18:38] 2026-03-01 12:18:06,597 | INFO     | current server update state: UPDATING_FINAL
[2026-03-01 13:18:38] 2026-03-01 12:18:06,597 | INFO     | update_server=False
[2026-03-01 13:18:38] 2026-03-01 12:18:06,597 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-01 13:18:38] 2026-03-01 12:18:06,598 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-01 13:18:38] 2026-03-01 12:18:06,787 | INFO     | all data control threads have been joined
[2026-03-01 13:18:38] 2026-03-01 12:18:06,945 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-01 13:18:38] 2026-03-01 12:18:06,945 | INFO     | aborting loop
[2026-03-01 13:18:38] 2026-03-01 12:18:07,075 | INFO     | all job control threads have been joined
[2026-03-01 13:18:38] 2026-03-01 12:18:07,598 | INFO     | [job] queue monitor thread has finished
[2026-03-01 13:18:38] 2026-03-01 12:18:07,603 | INFO     | [job] retrieve thread has finished
[2026-03-01 13:18:38] 2026-03-01 12:18:07,645 | INFO     | [payload] failed_post thread has finished
[2026-03-01 13:18:38] 2026-03-01 12:18:07,788 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-01 13:18:38] 2026-03-01 12:18:07,793 | INFO     | [data] control thread has finished
[2026-03-01 13:18:38] 2026-03-01 12:18:07,855 | INFO     | all payload control threads have been joined
[2026-03-01 13:18:38] 2026-03-01 12:18:07,951 | INFO     | [job] job monitor thread has finished
[2026-03-01 13:18:38] 2026-03-01 12:18:07,988 | INFO     | [payload] execute_payloads thread has finished
[2026-03-01 13:18:38] 2026-03-01 12:18:08,081 | INFO     | [job] control thread has finished
[2026-03-01 13:18:38] 2026-03-01 12:18:08,247 | INFO     | [job] validate thread has finished
[2026-03-01 13:18:38] 2026-03-01 12:18:08,319 | INFO     | [job] create_data_payload thread has finished
[2026-03-01 13:18:38] 2026-03-01 12:18:08,406 | INFO     | [payload] validate_pre thread has finished
[2026-03-01 13:18:38] 2026-03-01 12:18:08,419 | INFO     | [payload] validate_post thread has finished
[2026-03-01 13:18:38] 2026-03-01 12:18:08,445 | INFO     | [data] copytool_in thread has finished
[2026-03-01 13:18:38] 2026-03-01 12:18:08,861 | INFO     | [payload] control thread has finished
[2026-03-01 13:18:38] 2026-03-01 12:18:09,102 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-01 13:18:38] 2026-03-01 12:18:09,794 | INFO     | [data] copytool_out thread has finished
[2026-03-01 13:18:38] 2026-03-01 12:18:13,109 | INFO     | [data] queue_monitor thread has finished
[2026-03-01 13:18:38] 2026-03-01 12:18:17,342 | INFO     | job.realtimelogging is not enabled
[2026-03-01 13:18:38] 2026-03-01 12:18:18,348 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-01 13:18:38] 2026-03-01 12:18:33,309 | INFO     | [monitor] cgroup control has ended
[2026-03-01 13:18:38] 2026-03-01 12:18:33,375 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140038026016576)>', '<ExcThread(monitor, started 140037534508800)>']
[2026-03-01 13:18:38] 2026-03-01 12:18:36,881 | INFO     | PID=3655106 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-01 13:18:38] 2026-03-01 12:18:36,881 | INFO     | found 0 job(s) in 20 queues
[2026-03-01 13:18:38] 2026-03-01 12:18:36,881 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-01 13:18:38] 2026-03-01 12:18:36,881 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-01 13:18:38] 2026-03-01 12:18:36,881 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-01 13:18:38] 2026-03-01 12:18:36,881 | INFO     | [monitor] control thread has ended
[2026-03-01 13:18:38] 2026-03-01 12:18:38,401 | INFO     | all workflow threads have been joined
[2026-03-01 13:18:38] 2026-03-01 12:18:38,401 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-01 13:18:38] 2026-03-01 12:18:38,401 | INFO     | traces error code: 0
[2026-03-01 13:18:38] 2026-03-01 12:18:38,401 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-01 13:18:38] 2026-03-01 12:18:38,452 [wrapper] ==== pilot stdout END ====
[2026-03-01 13:18:38] 2026-03-01 12:18:38,454 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-01 13:18:38] 2026-03-01 12:18:38,456 [wrapper] pilotpid: 3655106
[2026-03-01 13:18:38] 2026-03-01 12:18:38,458 [wrapper] Pilot exit status: 0
[2026-03-01 13:18:38] 2026-03-01 12:18:38,466 [wrapper] pandaids: 7034441717
[2026-03-01 13:18:38] 2026-03-01 12:18:38,482 [wrapper] cleanup supervisor_pilot 3665459 3655107
[2026-03-01 13:18:38] 2026-03-01 12:18:38,484 [wrapper] Test setup, not cleaning
[2026-03-01 13:18:38] 2026-03-01 12:18:38,486 [wrapper] apfmon messages muted
[2026-03-01 13:18:38] 2026-03-01 12:18:38,489 [wrapper] ==== wrapper stdout END ====
[2026-03-01 13:18:38] 2026-03-01 12:18:38,491 [wrapper] ==== wrapper stderr END ====
[2026-03-01 13:18:38]  *** Error codes and diagnostics ***
[2026-03-01 13:18:38]     "exeErrorCode": 0,
[2026-03-01 13:18:38]     "exeErrorDiag": "",
[2026-03-01 13:18:38]     "pilotErrorCode": 0,
[2026-03-01 13:18:38]     "pilotErrorDiag": "",
[2026-03-01 13:18:38]  *** Listing of results directory ***
[2026-03-01 13:18:38] total 475072
[2026-03-01 13:18:38] -rw-r--r-- 1 boinc boinc    584627 Mar  1 06:54 pilot3.tar.gz
[2026-03-01 13:18:38] -rwx------ 1 boinc boinc     36322 Mar  1 06:55 runpilot2-wrapper.sh
[2026-03-01 13:18:38] -rw-r--r-- 1 boinc boinc      5111 Mar  1 06:55 queuedata.json
[2026-03-01 13:18:38] -rw-r--r-- 1 boinc boinc       100 Mar  1 11:43 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-01 13:18:38] -rwxr-xr-x 1 boinc boinc      7986 Mar  1 11:43 run_atlas
[2026-03-01 13:18:38] -rw-r--r-- 1 boinc boinc       105 Mar  1 11:43 job.xml
[2026-03-01 13:18:38] -rw-r--r-- 2 boinc boinc 272194200 Mar  1 11:43 EVNT.48343683._000056.pool.root.1
[2026-03-01 13:18:38] -rw-r--r-- 2 boinc boinc    597956 Mar  1 11:43 input.tar.gz
[2026-03-01 13:18:38] -rw-r--r-- 2 boinc boinc     15845 Mar  1 11:43 start_atlas.sh
[2026-03-01 13:18:38] drwxrwx--x 2 boinc boinc      4096 Mar  1 11:43 shared
[2026-03-01 13:18:38] -rw-r--r-- 1 boinc boinc         0 Mar  1 11:43 boinc_setup_complete
[2026-03-01 13:18:38] -rw-r--r-- 1 boinc boinc      6440 Mar  1 11:43 init_data.xml
[2026-03-01 13:18:38] -rw-r--r-- 1 boinc boinc         0 Mar  1 11:43 boinc_lockfile
[2026-03-01 13:18:38] -rw-r--r-- 1 boinc boinc      2563 Mar  1 11:43 pandaJob.out
[2026-03-01 13:18:38] -rw------- 1 boinc boinc    998198 Mar  1 11:43 agis_schedconf.cvmfs.json
[2026-03-01 13:18:38] -rw------- 1 boinc boinc   1513015 Mar  1 11:43 agis_ddmendpoints.agis.ALL.json
[2026-03-01 13:18:38] -rw------- 1 boinc boinc       428 Mar  1 11:43 workernode_map.json
[2026-03-01 13:18:38] drwx------ 5 boinc boinc      4096 Mar  1 11:43 pilot3
[2026-03-01 13:18:38] -rw------- 1 boinc boinc 208189240 Mar  1 13:17 HITS.48838521._001378.pool.root.1
[2026-03-01 13:18:38] -rw-r--r-- 1 boinc boinc       529 Mar  1 13:17 boinc_task_state.xml
[2026-03-01 13:18:38] -rw------- 1 boinc boinc        95 Mar  1 13:17 pilot_heartbeat.json
[2026-03-01 13:18:38] -rw------- 1 boinc boinc      1029 Mar  1 13:17 memory_monitor_summary.json
[2026-03-01 13:18:38] -rw------- 1 boinc boinc    258968 Mar  1 13:18 log.48838521._001378.job.log.tgz.1
[2026-03-01 13:18:38] -rw------- 1 boinc boinc      6309 Mar  1 13:18 heartbeat.json
[2026-03-01 13:18:38] -rw-r--r-- 1 boinc boinc      8192 Mar  1 13:18 boinc_mmap_file
[2026-03-01 13:18:38] -rw-r--r-- 1 boinc boinc        27 Mar  1 13:18 wrapper_checkpoint.txt
[2026-03-01 13:18:38] -rw------- 1 boinc boinc      4820 Mar  1 13:18 pilotlog.txt
[2026-03-01 13:18:38] -rw------- 1 boinc boinc    826580 Mar  1 13:18 log.48838521._001378.job.log.1
[2026-03-01 13:18:38] -rw------- 1 boinc boinc       357 Mar  1 13:18 output.list
[2026-03-01 13:18:38] -rw-r--r-- 1 boinc boinc       620 Mar  1 13:18 runtime_log
[2026-03-01 13:18:38] -rw------- 1 boinc boinc   1105920 Mar  1 13:18 result.tar.gz
[2026-03-01 13:18:38] -rw-r--r-- 1 boinc boinc      8901 Mar  1 13:18 runtime_log.err
[2026-03-01 13:18:38] -rw------- 1 boinc boinc       658 Mar  1 13:18 cRxLDmHxoG9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmb18KDmDkKsEn.diag
[2026-03-01 13:18:38] -rw-r--r-- 1 boinc boinc     11711 Mar  1 13:18 stderr.txt
[2026-03-01 13:18:38] HITS file was successfully produced:
[2026-03-01 13:18:38] -rw------- 1 boinc boinc 208189240 Mar  1 13:17 shared/HITS.pool.root.1
[2026-03-01 13:18:38]  *** Contents of shared directory: ***
[2026-03-01 13:18:38] total 470816
[2026-03-01 13:18:38] -rw-r--r-- 2 boinc boinc 272194200 Mar  1 11:43 ATLAS.root_0
[2026-03-01 13:18:38] -rw-r--r-- 2 boinc boinc    597956 Mar  1 11:43 input.tar.gz
[2026-03-01 13:18:38] -rw-r--r-- 2 boinc boinc     15845 Mar  1 11:43 start_atlas.sh
[2026-03-01 13:18:38] -rw------- 1 boinc boinc 208189240 Mar  1 13:17 HITS.pool.root.1
[2026-03-01 13:18:38] -rw------- 1 boinc boinc   1105920 Mar  1 13:18 result.tar.gz
13:18:39 (3651069): run_atlas exited; CPU time 16271.459246
13:18:39 (3651069): called boinc_finish(0)

</stderr_txt>
]]>

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