Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:43:04 (2811): wrapper (7.7.26015): starting
20:43:04 (2811): wrapper: running run_atlas (--nthreads 4)
[2026-03-01 20:43:04] Arguments: --nthreads 4
[2026-03-01 20:43:04] Threads: 4
[2026-03-01 20:43:04] Checking for CVMFS
[2026-03-01 20:43:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-01 20:43:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-01 20:43:08] Running cvmfs_config stat atlas.cern.ch
[2026-03-01 20:43:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-01 20:43:08] 2.9.2.0 3007 0 29064 156781 3 1 27851884 36864001 0 130560 0 0 100.000 0 0 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-01 20:43:08] CVMFS is ok
[2026-03-01 20:43:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-01 20:43:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-01 20:43:08] Further information can be found at the LHC@home message board.
[2026-03-01 20:43:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-01 20:43:08] Checking for apptainer binary...
[2026-03-01 20:43:08] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-01 20:43:08] Running /usr/bin/apptainer --version
[2026-03-01 20:43:08] apptainer version 1.4.1-1.1
[2026-03-01 20:43:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-01 20:43:08] atlasA215b
[2026-03-01 20:43:08] apptainer works
[2026-03-01 20:43:08] Set ATHENA_PROC_NUMBER=4
[2026-03-01 20:43:08] Set ATHENA_CORE_NUMBER=4
[2026-03-01 20:43:08] Starting ATLAS job with PandaID=7034317956
[2026-03-01 20:43:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-01 21:40:41]  *** The last 200 lines of the pilot log: ***
[2026-03-01 21:40:41] 2026-03-01 20:40:22,091 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-01 21:40:41] 2026-03-01 20:40:22,091 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-01 21:40:41] 2026-03-01 20:40:22,091 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-01 21:40:41] 2026-03-01 20:40:22,091 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-01 21:40:41] 2026-03-01 20:40:22,091 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-01 21:40:41] 2026-03-01 20:40:22,091 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-01 21:40:41] 2026-03-01 20:40:22,091 | INFO     | job 7034317956 has completed (purged errors)
[2026-03-01 21:40:41] 2026-03-01 20:40:22,091 | INFO     | overall cleanup function is called
[2026-03-01 21:40:41] 2026-03-01 20:40:23,098 | INFO     | --- collectZombieJob: --- 10, [11678]
[2026-03-01 21:40:41] 2026-03-01 20:40:23,099 | INFO     | zombie collector waiting for pid 11678
[2026-03-01 21:40:41] 2026-03-01 20:40:23,099 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-01 21:40:41] 2026-03-01 20:40:23,099 | INFO     | collected zombie processes
[2026-03-01 21:40:41] 2026-03-01 20:40:23,099 | INFO     | will attempt to kill all subprocesses of pid=11678
[2026-03-01 21:40:41] 2026-03-01 20:40:23,140 | INFO     | process IDs to be killed: [11678] (in reverse order)
[2026-03-01 21:40:41] 2026-03-01 20:40:23,173 | WARNING  | found no corresponding commands to process id(s)
[2026-03-01 21:40:41] 2026-03-01 20:40:23,173 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-01 21:40:41] 2026-03-01 20:40:23,174 | INFO     | did not find any defunct processes belonging to 11678
[2026-03-01 21:40:41] 2026-03-01 20:40:23,175 | INFO     | did not find any defunct processes belonging to 11678
[2026-03-01 21:40:41] 2026-03-01 20:40:23,176 | INFO     | ready for new job
[2026-03-01 21:40:41] 2026-03-01 20:40:23,176 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-01 21:40:41] 2026-03-01 20:40:23,176 | INFO     | **************************************
[2026-03-01 21:40:41] 2026-03-01 20:40:23,176 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-01 21:40:41] 2026-03-01 20:40:23,176 | INFO     | **************************************
[2026-03-01 21:40:41] 2026-03-01 20:40:23,176 | INFO     | 
[2026-03-01 21:40:41] 2026-03-01 20:40:23,177 | INFO     | architecture information:
[2026-03-01 21:40:41] 2026-03-01 20:40:23,177 | INFO     | executing command: cat /etc/os-release
[2026-03-01 21:40:41] 2026-03-01 20:40:23,191 | INFO     | cat /etc/os-release:
[2026-03-01 21:40:41] NAME="CentOS Linux"
[2026-03-01 21:40:41] VERSION="7 (Core)"
[2026-03-01 21:40:41] ID="centos"
[2026-03-01 21:40:41] ID_LIKE="rhel fedora"
[2026-03-01 21:40:41] VERSION_ID="7"
[2026-03-01 21:40:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-01 21:40:41] ANSI_COLOR="0;31"
[2026-03-01 21:40:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-01 21:40:41] HOME_URL="https://www.centos.org/"
[2026-03-01 21:40:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-01 21:40:41] 
[2026-03-01 21:40:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-01 21:40:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-01 21:40:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-01 21:40:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-01 21:40:41] 
[2026-03-01 21:40:41] 2026-03-01 20:40:23,191 | INFO     | **************************************
[2026-03-01 21:40:41] 2026-03-01 20:40:23,694 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-01 21:40:41] 2026-03-01 20:40:23,712 | INFO     | sufficient remaining disk space (331860672512 B)
[2026-03-01 21:40:41] 2026-03-01 20:40:23,712 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-01 21:40:41] 2026-03-01 20:40:23,713 | INFO     | current server update state: UPDATING_FINAL
[2026-03-01 21:40:41] 2026-03-01 20:40:23,713 | INFO     | update_server=False
[2026-03-01 21:40:41] 2026-03-01 20:40:23,713 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-01 21:40:41] 2026-03-01 20:40:23,713 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-01 21:40:41] 2026-03-01 20:40:23,713 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-01 21:40:41] 2026-03-01 20:40:23,713 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-01 21:40:41] 2026-03-01 20:40:23,713 | INFO     | found 0 job(s) in 20 queues
[2026-03-01 21:40:41] 2026-03-01 20:40:23,713 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-01 21:40:41] 2026-03-01 20:40:23,713 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-01 21:40:41] 2026-03-01 20:40:23,989 | INFO     | all data control threads have been joined
[2026-03-01 21:40:41] 2026-03-01 20:40:24,277 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-01 21:40:41] 2026-03-01 20:40:24,277 | INFO     | aborting loop
[2026-03-01 21:40:41] 2026-03-01 20:40:24,718 | INFO     | [job] retrieve thread has finished
[2026-03-01 21:40:41] 2026-03-01 20:40:24,719 | INFO     | [job] queue monitor thread has finished
[2026-03-01 21:40:41] 2026-03-01 20:40:24,742 | INFO     | all job control threads have been joined
[2026-03-01 21:40:41] 2026-03-01 20:40:24,753 | INFO     | [payload] execute_payloads thread has finished
[2026-03-01 21:40:41] 2026-03-01 20:40:24,801 | INFO     | [job] create_data_payload thread has finished
[2026-03-01 21:40:41] 2026-03-01 20:40:24,925 | INFO     | [payload] validate_pre thread has finished
[2026-03-01 21:40:41] 2026-03-01 20:40:24,937 | INFO     | [data] copytool_in thread has finished
[2026-03-01 21:40:41] 2026-03-01 20:40:24,995 | INFO     | [data] control thread has finished
[2026-03-01 21:40:41] 2026-03-01 20:40:25,041 | INFO     | all payload control threads have been joined
[2026-03-01 21:40:41] 2026-03-01 20:40:25,087 | INFO     | [payload] validate_post thread has finished
[2026-03-01 21:40:41] 2026-03-01 20:40:25,148 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-01 21:40:41] 2026-03-01 20:40:25,283 | INFO     | [job] job monitor thread has finished
[2026-03-01 21:40:41] 2026-03-01 20:40:25,392 | INFO     | [payload] failed_post thread has finished
[2026-03-01 21:40:41] 2026-03-01 20:40:25,449 | INFO     | [monitor] cgroup control has ended
[2026-03-01 21:40:41] 2026-03-01 20:40:25,748 | INFO     | [job] control thread has finished
[2026-03-01 21:40:41] 2026-03-01 20:40:26,047 | INFO     | [payload] control thread has finished
[2026-03-01 21:40:41] 2026-03-01 20:40:26,136 | INFO     | [job] validate thread has finished
[2026-03-01 21:40:41] 2026-03-01 20:40:27,154 | INFO     | [data] copytool_out thread has finished
[2026-03-01 21:40:41] 2026-03-01 20:40:27,720 | INFO     | [data] queue_monitor thread has finished
[2026-03-01 21:40:41] 2026-03-01 20:40:33,954 | INFO     | job.realtimelogging is not enabled
[2026-03-01 21:40:41] 2026-03-01 20:40:34,959 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-01 21:40:41] 2026-03-01 20:40:35,785 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140108304136000)>', '<ExcThread(monitor, started 140107495483136)>']
[2026-03-01 21:40:41] 2026-03-01 20:40:36,782 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-01 21:40:41] 2026-03-01 20:40:36,783 | INFO     | [monitor] control thread has ended
[2026-03-01 21:40:41] 2026-03-01 20:40:40,810 | INFO     | all workflow threads have been joined
[2026-03-01 21:40:41] 2026-03-01 20:40:40,811 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-01 21:40:41] 2026-03-01 20:40:40,811 | INFO     | traces error code: 0
[2026-03-01 21:40:41] 2026-03-01 20:40:40,811 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-01 21:40:41] 2026-03-01 20:40:40,888 [wrapper] ==== pilot stdout END ====
[2026-03-01 21:40:41] 2026-03-01 20:40:40,892 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-01 21:40:41] 2026-03-01 20:40:40,897 [wrapper] pilotpid: 7164
[2026-03-01 21:40:41] 2026-03-01 20:40:40,901 [wrapper] Pilot exit status: 0
[2026-03-01 21:40:41] 2026-03-01 20:40:40,914 [wrapper] pandaids: 7034317956
[2026-03-01 21:40:41] 2026-03-01 20:40:40,935 [wrapper] cleanup supervisor_pilot   16738 7165
[2026-03-01 21:40:41] 2026-03-01 20:40:40,939 [wrapper] Test setup, not cleaning
[2026-03-01 21:40:41] 2026-03-01 20:40:40,943 [wrapper] apfmon messages muted
[2026-03-01 21:40:41] 2026-03-01 20:40:40,947 [wrapper] ==== wrapper stdout END ====
[2026-03-01 21:40:41] 2026-03-01 20:40:40,951 [wrapper] ==== wrapper stderr END ====
[2026-03-01 21:40:41]  *** Error codes and diagnostics ***
[2026-03-01 21:40:41]     "exeErrorCode": 0,
[2026-03-01 21:40:41]     "exeErrorDiag": "",
[2026-03-01 21:40:41]     "pilotErrorCode": 0,
[2026-03-01 21:40:41]     "pilotErrorDiag": "",
[2026-03-01 21:40:41]  *** Listing of results directory ***
[2026-03-01 21:40:41] total 338024
[2026-03-01 21:40:41] -rwx------ 1 boinc boinc     36322 Mar  1 05:26 runpilot2-wrapper.sh
[2026-03-01 21:40:41] -rw-r--r-- 1 boinc boinc      5111 Mar  1 05:28 queuedata.json
[2026-03-01 21:40:41] -rw-r--r-- 1 boinc boinc    584627 Mar  1 05:28 pilot3.tar.gz
[2026-03-01 21:40:41] -rw-r--r-- 1 boinc boinc       100 Mar  1 20:43 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-01 21:40:41] -rwxr-xr-x 1 boinc boinc      7986 Mar  1 20:43 run_atlas
[2026-03-01 21:40:41] -rw-r--r-- 1 boinc boinc       105 Mar  1 20:43 job.xml
[2026-03-01 21:40:41] -rw-r--r-- 2 boinc boinc 189768643 Mar  1 20:43 EVNT.48700904._000038.pool.root.1
[2026-03-01 21:40:41] -rw-r--r-- 2 boinc boinc    597940 Mar  1 20:43 input.tar.gz
[2026-03-01 21:40:41] -rw-r--r-- 2 boinc boinc     15845 Mar  1 20:43 start_atlas.sh
[2026-03-01 21:40:41] drwxrwx--x 2 boinc boinc      4096 Mar  1 20:43 shared
[2026-03-01 21:40:41] -rw-r--r-- 1 boinc boinc         0 Mar  1 20:43 boinc_setup_complete
[2026-03-01 21:40:41] -rw-r--r-- 1 boinc boinc         0 Mar  1 20:43 boinc_lockfile
[2026-03-01 21:40:41] -rw-r--r-- 1 boinc boinc      2517 Mar  1 20:43 pandaJob.out
[2026-03-01 21:40:41] -rw------- 1 boinc boinc    998184 Mar  1 20:43 agis_schedconf.cvmfs.json
[2026-03-01 21:40:41] -rw------- 1 boinc boinc   1513015 Mar  1 20:43 agis_ddmendpoints.agis.ALL.json
[2026-03-01 21:40:41] -rw------- 1 boinc boinc       431 Mar  1 20:43 workernode_map.json
[2026-03-01 21:40:41] drwx------ 5 boinc boinc      4096 Mar  1 20:43 pilot3
[2026-03-01 21:40:41] -rw-r--r-- 1 boinc boinc      6378 Mar  1 21:26 init_data.xml
[2026-03-01 21:40:41] -rw------- 1 boinc boinc        95 Mar  1 21:39 pilot_heartbeat.json
[2026-03-01 21:40:41] -rw------- 1 boinc boinc 150911320 Mar  1 21:40 HITS.48700906._000942.pool.root.1
[2026-03-01 21:40:41] -rw-r--r-- 1 boinc boinc       530 Mar  1 21:40 boinc_task_state.xml
[2026-03-01 21:40:41] -rw------- 1 boinc boinc      1020 Mar  1 21:40 memory_monitor_summary.json
[2026-03-01 21:40:41] -rw------- 1 boinc boinc    251014 Mar  1 21:40 log.48700906._000942.job.log.tgz.1
[2026-03-01 21:40:41] -rw------- 1 boinc boinc      6322 Mar  1 21:40 heartbeat.json
[2026-03-01 21:40:41] -rw-r--r-- 1 boinc boinc        27 Mar  1 21:40 wrapper_checkpoint.txt
[2026-03-01 21:40:41] -rw------- 1 boinc boinc      4624 Mar  1 21:40 pilotlog.txt
[2026-03-01 21:40:41] -rw-r--r-- 1 boinc boinc      8192 Mar  1 21:40 boinc_mmap_file
[2026-03-01 21:40:41] -rw------- 1 boinc boinc    515174 Mar  1 21:40 log.48700906._000942.job.log.1
[2026-03-01 21:40:41] -rw------- 1 boinc boinc       357 Mar  1 21:40 output.list
[2026-03-01 21:40:41] -rw-r--r-- 1 boinc boinc       620 Mar  1 21:40 runtime_log
[2026-03-01 21:40:41] -rw------- 1 boinc boinc    788480 Mar  1 21:40 result.tar.gz
[2026-03-01 21:40:41] -rw-r--r-- 1 boinc boinc      8916 Mar  1 21:40 runtime_log.err
[2026-03-01 21:40:41] -rw------- 1 boinc boinc       661 Mar  1 21:40 jSSMDm4YnG9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmuw8KDmwUpbZm.diag
[2026-03-01 21:40:41] -rw-r--r-- 1 boinc boinc     11390 Mar  1 21:40 stderr.txt
[2026-03-01 21:40:41] HITS file was successfully produced:
[2026-03-01 21:40:41] -rw------- 1 boinc boinc 150911320 Mar  1 21:40 shared/HITS.pool.root.1
[2026-03-01 21:40:41]  *** Contents of shared directory: ***
[2026-03-01 21:40:41] total 334080
[2026-03-01 21:40:41] -rw-r--r-- 2 boinc boinc 189768643 Mar  1 20:43 ATLAS.root_0
[2026-03-01 21:40:41] -rw-r--r-- 2 boinc boinc    597940 Mar  1 20:43 input.tar.gz
[2026-03-01 21:40:41] -rw-r--r-- 2 boinc boinc     15845 Mar  1 20:43 start_atlas.sh
[2026-03-01 21:40:41] -rw------- 1 boinc boinc 150911320 Mar  1 21:40 HITS.pool.root.1
[2026-03-01 21:40:41] -rw------- 1 boinc boinc    788480 Mar  1 21:40 result.tar.gz
21:40:42 (2811): run_atlas exited; CPU time 12691.182873
21:40:42 (2811): called boinc_finish(0)

</stderr_txt>
]]>

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