Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:08:52 (2177338): wrapper (7.7.26015): starting
12:08:52 (2177338): wrapper: running run_atlas (--nthreads 4)
[2026-03-01 12:08:52] Arguments: --nthreads 4
[2026-03-01 12:08:52] Threads: 4
[2026-03-01 12:08:52] Checking for CVMFS
[2026-03-01 12:08:52] No cvmfs_config command found, will try listing directly
[2026-03-01 12:08:52] CVMFS is ok
[2026-03-01 12:08:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-01 12:08:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-01 12:08:52] Further information can be found at the LHC@home message board.
[2026-03-01 12:08:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-01 12:08:52] Checking for apptainer binary...
[2026-03-01 12:08:52] which: no apptainer in ((null))
[2026-03-01 12:08:52] apptainer is not installed, using version from CVMFS
[2026-03-01 12:08:52] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-01 12:08:52] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot84/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut22.grid.cesnet.cz
[2026-03-01 12:08:52] apptainer works
[2026-03-01 12:08:52] Set ATHENA_PROC_NUMBER=4
[2026-03-01 12:08:52] Set ATHENA_CORE_NUMBER=4
[2026-03-01 12:08:52] Starting ATLAS job with PandaID=7034261648
[2026-03-01 12:08:52] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot84/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-01 13:31:19]  *** The last 200 lines of the pilot log: ***
[2026-03-01 13:31:19] ]
[2026-03-01 13:31:19] 2026-03-01 12:30:26,314 | INFO     | transferring file log.48843780._000024.job.log.tgz.1 from /var/lib/boinc/var/slot84/slots/0/PanDA_Pilot-7034261648/log.48843780._000024.job.log.tgz.1 to /var/lib/b
[2026-03-01 13:31:19] 2026-03-01 12:30:26,314 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot84/slots/0/PanDA_Pilot-7034261648/log.48843780._000024.job.log.tgz.1 /var/lib/boinc/var/slot84/slots/0/lo
[2026-03-01 13:31:19] 2026-03-01 12:30:26,331 | INFO     | adding to output.list: log.48843780._000024.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/43/18/log.48843780._000024.job.log.tg
[2026-03-01 13:31:19] 2026-03-01 12:30:26,332 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-01 13:31:19] 2026-03-01 12:30:26,332 | INFO     | summary of transferred files:
[2026-03-01 13:31:19] 2026-03-01 12:30:26,332 | INFO     |  -- lfn=log.48843780._000024.job.log.tgz.1, status_code=0, status=transferred
[2026-03-01 13:31:19] 2026-03-01 12:30:26,332 | INFO     | stage-out finished correctly
[2026-03-01 13:31:19] 2026-03-01 12:30:27,594 | INFO     | time since job start (4882s) is within the limit (349056.0s)
[2026-03-01 13:31:19] 2026-03-01 12:30:28,083 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-01 13:31:19] 2026-03-01 12:30:29,599 | INFO     | time since job start (4884s) is within the limit (349056.0s)
[2026-03-01 13:31:19] 2026-03-01 12:30:29,741 | WARNING  | process 2204574 can no longer be monitored (due to stat problems) - aborting
[2026-03-01 13:31:19] 2026-03-01 12:30:29,741 | INFO     | using path: /var/lib/boinc/var/slot84/slots/0/PanDA_Pilot-7034261648/memory_monitor_summary.json (trf name=prmon)
[2026-03-01 13:31:19] 2026-03-01 12:30:29,742 | INFO     | using path: /var/lib/boinc/var/slot84/slots/0/PanDA_Pilot-7034261648/memory_monitor_summary.json (trf name=prmon)
[2026-03-01 13:31:19] 2026-03-01 12:30:29,742 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-01 13:31:19] 2026-03-01 12:30:29,742 | WARNING  | maxPSS not found in memory monitor output
[2026-03-01 13:31:19] 2026-03-01 12:30:29,742 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2832491 B
[2026-03-01 13:31:19] 2026-03-01 12:30:29,742 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15590 B
[2026-03-01 13:31:19] 2026-03-01 12:30:29,742 | INFO     | executing command: df -mP /var/lib/boinc/var/slot84/slots/0
[2026-03-01 13:31:19] 2026-03-01 12:30:29,754 | INFO     | sufficient remaining disk space (184701419520 B)
[2026-03-01 13:31:19] 2026-03-01 12:30:29,755 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-03-01 13:31:19] 2026-03-01 12:30:29,755 | INFO     | size of work directory /var/lib/boinc/var/slot84/slots/0/PanDA_Pilot-7034261648: 3132839 B (within 5033164800 B limit)
[2026-03-01 13:31:19] 2026-03-01 12:30:29,755 | INFO     | pfn file=/var/lib/boinc/var/slot84/slots/0/PanDA_Pilot-7034261648/HITS.48843780._000024.pool.root.1 does not exist (skip from workdir size calculation)
[2026-03-01 13:31:19] 2026-03-01 12:30:29,755 | INFO     | total size of present files: 0 B (workdir size: 3132839 B)
[2026-03-01 13:31:19] 2026-03-01 12:30:29,755 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot84/slots/0/PanDA_Pilot-7034261648/HITS.48843780._000024.pool.root.1 since it does not exist
[2026-03-01 13:31:19] 2026-03-01 12:30:30,183 | INFO     | job 7034261648 has state=finished
[2026-03-01 13:31:19] 2026-03-01 12:30:30,184 | INFO     | preparing for final server update for job 7034261648 in state='finished'
[2026-03-01 13:31:19] 2026-03-01 12:30:30,184 | INFO     | reading metadata from: /var/lib/boinc/var/slot84/slots/0/PanDA_Pilot-7034261648/jobReport.json
[2026-03-01 13:31:19] 2026-03-01 12:30:30,185 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot84/slots/0/workernode_map.json
[2026-03-01 13:31:19] 2026-03-01 12:30:30,185 | INFO     | this job has now completed (state=finished)
[2026-03-01 13:31:19] 2026-03-01 12:30:30,186 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-01 13:31:19] 2026-03-01 12:30:30,186 | INFO     | log transfer has been attempted: DONE
[2026-03-01 13:31:19] 2026-03-01 12:30:30,186 | INFO     | job 7034261648 has finished - writing final server update
[2026-03-01 13:31:19] 2026-03-01 12:30:30,186 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_16220/.job.ad'
[2026-03-01 13:31:19] 2026-03-01 12:30:30,186 | INFO     | total number of processed events: 400 (read)
[2026-03-01 13:31:19] 2026-03-01 12:30:30,212 | INFO     | using path: /var/lib/boinc/var/slot84/slots/0/PanDA_Pilot-7034261648/memory_monitor_summary.json (trf name=prmon)
[2026-03-01 13:31:19] 2026-03-01 12:30:30,212 | INFO     | extracted standard info from prmon json
[2026-03-01 13:31:19] 2026-03-01 12:30:30,212 | INFO     | extracted standard memory fields from prmon json
[2026-03-01 13:31:19] 2026-03-01 12:30:30,212 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-01 13:31:19] 2026-03-01 12:30:30,212 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-01 13:31:19] 2026-03-01 12:30:30,212 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-01 13:31:19] 2026-03-01 12:30:30,214 | INFO     | fitting pss+swap vs Time
[2026-03-01 13:31:19] 2026-03-01 12:30:30,214 | INFO     | sum of square deviations: 120605052.0
[2026-03-01 13:31:19] 2026-03-01 12:30:30,214 | INFO     | sum of deviations: 612355576.0000001
[2026-03-01 13:31:19] 2026-03-01 12:30:30,214 | INFO     | mean x: 1772365867.0
[2026-03-01 13:31:19] 2026-03-01 12:30:30,214 | INFO     | mean y: 2334450.2328767125
[2026-03-01 13:31:19] 2026-03-01 12:30:30,214 | INFO     | intersect: -8996609651.789688
[2026-03-01 13:31:19] 2026-03-01 12:30:30,214 | INFO     | chi2: 0.00021015985889350432
[2026-03-01 13:31:19] 2026-03-01 12:30:30,214 | INFO     | current memory leak: 5.08 B/s (using 73 data points, chi2=0.00)
[2026-03-01 13:31:19] 2026-03-01 12:30:30,215 | INFO     | could have reported an average CPU frequency of 3588 MHz (6 samples)
[2026-03-01 13:31:19] 2026-03-01 12:30:30,215 | INFO     | ..............................
[2026-03-01 13:31:19] 2026-03-01 12:30:30,215 | INFO     | . Timing measurements:
[2026-03-01 13:31:19] 2026-03-01 12:30:30,215 | INFO     | . get job = 0 s
[2026-03-01 13:31:19] 2026-03-01 12:30:30,215 | INFO     | . initial setup = 5 s
[2026-03-01 13:31:19] 2026-03-01 12:30:30,215 | INFO     | . payload setup = 4 s
[2026-03-01 13:31:19] 2026-03-01 12:30:30,215 | INFO     | . stage-in = 0 s
[2026-03-01 13:31:19] 2026-03-01 12:30:30,215 | INFO     | . payload execution = 4860 s
[2026-03-01 13:31:19] 2026-03-01 12:30:30,215 | INFO     | . stage-out = 0 s
[2026-03-01 13:31:19] 2026-03-01 12:30:30,215 | INFO     | . log creation = 0 s
[2026-03-01 13:31:19] 2026-03-01 12:30:30,215 | INFO     | ..............................
[2026-03-01 13:31:19] 2026-03-01 12:30:30,264 | INFO     | 
[2026-03-01 13:31:19] 2026-03-01 12:30:30,264 | INFO     | job summary report
[2026-03-01 13:31:19] 2026-03-01 12:30:30,264 | INFO     | --------------------------------------------------
[2026-03-01 13:31:19] 2026-03-01 12:30:30,264 | INFO     | PanDA job id: 7034261648
[2026-03-01 13:31:19] 2026-03-01 12:30:30,264 | INFO     | task id: 48843780
[2026-03-01 13:31:19] 2026-03-01 12:30:30,264 | INFO     | errors: (none)
[2026-03-01 13:31:19] 2026-03-01 12:30:30,264 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-01 13:31:19] 2026-03-01 12:30:30,265 | INFO     | pilot state: finished 
[2026-03-01 13:31:19] 2026-03-01 12:30:30,265 | INFO     | transexitcode: 0
[2026-03-01 13:31:19] 2026-03-01 12:30:30,265 | INFO     | exeerrorcode: 0
[2026-03-01 13:31:19] 2026-03-01 12:30:30,265 | INFO     | exeerrordiag: 
[2026-03-01 13:31:19] 2026-03-01 12:30:30,265 | INFO     | exitcode: 0
[2026-03-01 13:31:19] 2026-03-01 12:30:30,265 | INFO     | exitmsg: OK
[2026-03-01 13:31:19] 2026-03-01 12:30:30,265 | INFO     | cpuconsumptiontime: 18584 s
[2026-03-01 13:31:19] 2026-03-01 12:30:30,265 | INFO     | nevents: 400
[2026-03-01 13:31:19] 2026-03-01 12:30:30,265 | INFO     | neventsw: 0
[2026-03-01 13:31:19] 2026-03-01 12:30:30,265 | INFO     | pid: 2204574
[2026-03-01 13:31:19] 2026-03-01 12:30:30,265 | INFO     | pgrp: 2204574
[2026-03-01 13:31:19] 2026-03-01 12:30:30,265 | INFO     | corecount: 4
[2026-03-01 13:31:19] 2026-03-01 12:30:30,265 | INFO     | event service: False
[2026-03-01 13:31:19] 2026-03-01 12:30:30,265 | INFO     | sizes: {0: 2282082, 1: 2282344, 11: 2282372, 4869: 2308676, 4870: 2317696, 4872: 2317752, 4874: 2318102}
[2026-03-01 13:31:19] 2026-03-01 12:30:30,265 | INFO     | --------------------------------------------------
[2026-03-01 13:31:19] 2026-03-01 12:30:30,265 | INFO     | 
[2026-03-01 13:31:19] 2026-03-01 12:30:30,265 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot84/slots/0
[2026-03-01 13:31:19] 2026-03-01 12:30:30,283 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-01 13:31:19] 2026-03-01 12:30:30,284 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-01 13:31:19] 2026-03-01 12:30:30,284 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-01 13:31:19] 2026-03-01 12:30:30,284 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-01 13:31:19] 2026-03-01 12:30:30,284 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-01 13:31:19] 2026-03-01 12:30:30,284 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-01 13:31:19] 2026-03-01 12:30:30,284 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-01 13:31:19] 2026-03-01 12:30:30,284 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-01 13:31:19] 2026-03-01 12:30:30,284 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-01 13:31:19] 2026-03-01 12:30:30,284 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-01 13:31:19] 2026-03-01 12:30:30,284 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-01 13:31:19] 2026-03-01 12:30:30,284 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-01 13:31:19] 2026-03-01 12:30:30,284 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-01 13:31:19] 2026-03-01 12:30:30,284 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-01 13:31:19] 2026-03-01 12:30:30,284 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-01 13:31:19] 2026-03-01 12:30:30,284 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-01 13:31:19] 2026-03-01 12:30:30,284 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-01 13:31:19] 2026-03-01 12:30:30,284 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-01 13:31:19] 2026-03-01 12:30:30,284 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-01 13:31:19] 2026-03-01 12:30:30,284 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-01 13:31:19] 2026-03-01 12:30:30,284 | INFO     | job 7034261648 has completed (purged errors)
[2026-03-01 13:31:19] 2026-03-01 12:30:30,284 | INFO     | overall cleanup function is called
[2026-03-01 13:31:19] 2026-03-01 12:30:30,301 | INFO     | number of running child processes to parent process 2204574: 1
[2026-03-01 13:31:19] 2026-03-01 12:30:30,302 | INFO     | maximum number of monitored processes: 6
[2026-03-01 13:31:19] 2026-03-01 12:30:30,302 | INFO     | aborting job monitoring since job object (job id=7034261648) has expired
[2026-03-01 13:31:19] 2026-03-01 12:30:31,292 | INFO     | --- collectZombieJob: --- 10, [2204574]
[2026-03-01 13:31:19] 2026-03-01 12:30:31,293 | INFO     | zombie collector waiting for pid 2204574
[2026-03-01 13:31:19] 2026-03-01 12:30:31,293 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-01 13:31:19] 2026-03-01 12:30:31,293 | INFO     | collected zombie processes
[2026-03-01 13:31:19] 2026-03-01 12:30:31,293 | INFO     | will attempt to kill all subprocesses of pid=2204574
[2026-03-01 13:31:19] 2026-03-01 12:30:31,775 | INFO     | process IDs to be killed: [2204574] (in reverse order)
[2026-03-01 13:31:19] 2026-03-01 12:30:32,015 | WARNING  | found no corresponding commands to process id(s)
[2026-03-01 13:31:19] 2026-03-01 12:30:32,016 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-01 13:31:19] 2026-03-01 12:30:32,049 | INFO     | did not find any defunct processes belonging to 2204574
[2026-03-01 13:31:19] 2026-03-01 12:30:32,079 | INFO     | did not find any defunct processes belonging to 2204574
[2026-03-01 13:31:19] 2026-03-01 12:30:32,079 | INFO     | ready for new job
[2026-03-01 13:31:19] 2026-03-01 12:30:32,079 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-01 13:31:19] 2026-03-01 12:30:32,080 | INFO     | **************************************
[2026-03-01 13:31:19] 2026-03-01 12:30:32,080 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-01 13:31:19] 2026-03-01 12:30:32,080 | INFO     | **************************************
[2026-03-01 13:31:19] 2026-03-01 12:30:32,080 | INFO     | 
[2026-03-01 13:31:19] 2026-03-01 12:30:32,086 | INFO     | architecture information:
[2026-03-01 13:31:19] 2026-03-01 12:30:32,090 | INFO     | executing command: cat /etc/os-release
[2026-03-01 13:31:19] 2026-03-01 12:30:32,106 | INFO     | cat /etc/os-release:
[2026-03-01 13:31:19] NAME="CentOS Linux"
[2026-03-01 13:31:19] VERSION="7 (Core)"
[2026-03-01 13:31:19] ID="centos"
[2026-03-01 13:31:19] ID_LIKE="rhel fedora"
[2026-03-01 13:31:19] VERSION_ID="7"
[2026-03-01 13:31:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-01 13:31:19] ANSI_COLOR="0;31"
[2026-03-01 13:31:19] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-01 13:31:19] HOME_URL="https://www.centos.org/"
[2026-03-01 13:31:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-01 13:31:19] 
[2026-03-01 13:31:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-01 13:31:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-01 13:31:19] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-01 13:31:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-01 13:31:19] 
[2026-03-01 13:31:19] 2026-03-01 12:30:32,106 | INFO     | **************************************
[2026-03-01 13:31:19] 2026-03-01 12:30:32,609 | INFO     | executing command: df -mP /var/lib/boinc/var/slot84/slots/0
[2026-03-01 13:31:19] 2026-03-01 12:30:32,625 | INFO     | sufficient remaining disk space (184564056064 B)
[2026-03-01 13:31:19] 2026-03-01 12:30:32,626 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-01 13:31:19] 2026-03-01 12:30:32,626 | INFO     | current server update state: UPDATING_FINAL
[2026-03-01 13:31:19] 2026-03-01 12:30:32,626 | INFO     | update_server=False
[2026-03-01 13:31:19] 2026-03-01 12:30:32,626 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-01 13:31:19] 2026-03-01 12:30:32,626 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-01 13:31:19] 2026-03-01 12:30:32,807 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-01 13:31:19] 2026-03-01 12:30:32,808 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-01 13:31:19] 2026-03-01 12:30:32,808 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-01 13:31:19] 2026-03-01 12:30:32,808 | INFO     | will abort loop
[2026-03-01 13:31:19] 2026-03-01 12:30:32,830 | INFO     | all data control threads have been joined
[2026-03-01 13:31:19] 2026-03-01 12:30:33,074 | INFO     | all job control threads have been joined
[2026-03-01 13:31:19] 2026-03-01 12:30:33,347 | INFO     | all payload control threads have been joined
[2026-03-01 13:31:19] 2026-03-01 12:30:33,631 | INFO     | [job] retrieve thread has finished
[2026-03-01 13:31:19] 2026-03-01 12:30:33,787 | INFO     | [job] validate thread has finished
[2026-03-01 13:31:19] 2026-03-01 12:30:33,825 | INFO     | [job] job monitor thread has finished
[2026-03-01 13:31:19] 2026-03-01 12:30:33,835 | INFO     | [data] control thread has finished
[2026-03-01 13:31:19] 2026-03-01 12:30:33,935 | INFO     | [payload] validate_post thread has finished
[2026-03-01 13:31:19] 2026-03-01 12:30:34,028 | INFO     | [job] create_data_payload thread has finished
[2026-03-01 13:31:19] 2026-03-01 12:30:34,080 | INFO     | [job] control thread has finished
[2026-03-01 13:31:19] 2026-03-01 12:30:34,133 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-01 13:31:19] 2026-03-01 12:30:34,156 | INFO     | [payload] validate_pre thread has finished
[2026-03-01 13:31:19] 2026-03-01 12:30:34,257 | INFO     | [data] copytool_in thread has finished
[2026-03-01 13:31:19] 2026-03-01 12:30:34,331 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-01 13:31:19] 2026-03-01 12:30:34,347 | INFO     | [payload] control thread has finished
[2026-03-01 13:31:19] 2026-03-01 12:30:34,538 | INFO     | [payload] failed_post thread has finished
[2026-03-01 13:31:19] 2026-03-01 12:30:34,632 | INFO     | [data] copytool_out thread has finished
[2026-03-01 13:31:19] 2026-03-01 12:30:34,892 | INFO     | [payload] execute_payloads thread has finished
[2026-03-01 13:31:19] 2026-03-01 12:30:35,276 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-01 13:31:19] 2026-03-01 12:30:36,281 | INFO     | [job] queue monitor thread has finished
[2026-03-01 13:31:19] 2026-03-01 12:30:38,139 | INFO     | [data] queue_monitor thread has finished
[2026-03-01 13:31:19] 2026-03-01 12:31:03,152 | INFO     | PID=2186145 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-01 13:31:19] 2026-03-01 12:31:03,153 | INFO     | .. there are 50 such processes running
[2026-03-01 13:31:19] 2026-03-01 12:31:03,153 | INFO     | found 0 job(s) in 20 queues
[2026-03-01 13:31:19] 2026-03-01 12:31:03,153 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-01 13:31:19] 2026-03-01 12:31:03,153 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-01 13:31:19] 2026-03-01 12:31:12,929 | INFO     | [monitor] cgroup control has ended
[2026-03-01 13:31:19] 2026-03-01 12:31:13,935 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22648232130368)>', '<ExcThread(monitor, started 22647984613120)>']
[2026-03-01 13:31:19] 2026-03-01 12:31:14,207 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-01 13:31:19] 2026-03-01 12:31:14,208 | INFO     | [monitor] control thread has ended
[2026-03-01 13:31:19] 2026-03-01 12:31:18,960 | INFO     | all workflow threads have been joined
[2026-03-01 13:31:19] 2026-03-01 12:31:18,960 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-01 13:31:19] 2026-03-01 12:31:18,960 | INFO     | traces error code: 0
[2026-03-01 13:31:19] 2026-03-01 12:31:18,960 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-01 13:31:19] 2026-03-01 12:31:19,091 [wrapper] ==== pilot stdout END ====
[2026-03-01 13:31:19] 2026-03-01 12:31:19,094 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-01 13:31:19] 2026-03-01 12:31:19,097 [wrapper] pilotpid: 2186145
[2026-03-01 13:31:19] 2026-03-01 12:31:19,099 [wrapper] Pilot exit status: 0
[2026-03-01 13:31:19] 2026-03-01 12:31:19,108 [wrapper] pandaids: 7034261648
[2026-03-01 13:31:19] 2026-03-01 12:31:19,240 [wrapper] cleanup supervisor_pilot 2915225 2186146
[2026-03-01 13:31:19] 2026-03-01 12:31:19,243 [wrapper] Test setup, not cleaning
[2026-03-01 13:31:19] 2026-03-01 12:31:19,246 [wrapper] apfmon messages muted
[2026-03-01 13:31:19] 2026-03-01 12:31:19,248 [wrapper] ==== wrapper stdout END ====
[2026-03-01 13:31:19] 2026-03-01 12:31:19,251 [wrapper] ==== wrapper stderr END ====
[2026-03-01 13:31:19]  *** Error codes and diagnostics ***
[2026-03-01 13:31:19]     "exeErrorCode": 0,
[2026-03-01 13:31:19]     "exeErrorDiag": "",
[2026-03-01 13:31:19]     "pilotErrorCode": 0,
[2026-03-01 13:31:19]     "pilotErrorDiag": "",
[2026-03-01 13:31:19]  *** Listing of results directory ***
[2026-03-01 13:31:19] total 413728
[2026-03-01 13:31:19] -rw-r--r--. 1 boinc boinc    584627 Mar  1 03:30 pilot3.tar.gz
[2026-03-01 13:31:19] -rwx------. 1 boinc boinc     36322 Mar  1 03:32 runpilot2-wrapper.sh
[2026-03-01 13:31:19] -rw-r--r--. 1 boinc boinc      5111 Mar  1 03:33 queuedata.json
[2026-03-01 13:31:19] -rw-r--r--. 1 boinc boinc       100 Mar  1 12:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-01 13:31:19] -rwxr-xr-x. 1 boinc boinc      7986 Mar  1 12:08 run_atlas
[2026-03-01 13:31:19] -rw-r--r--. 1 boinc boinc       105 Mar  1 12:08 job.xml
[2026-03-01 13:31:19] -rw-r--r--. 2 boinc boinc     15845 Mar  1 12:08 start_atlas.sh
[2026-03-01 13:31:19] drwxrwx--x. 2 boinc boinc      4096 Mar  1 12:08 shared
[2026-03-01 13:31:19] -rw-r--r--. 2 boinc boinc    597956 Mar  1 12:08 input.tar.gz
[2026-03-01 13:31:19] -rw-r--r--. 1 boinc boinc      6701 Mar  1 12:08 init_data.xml
[2026-03-01 13:31:19] -rw-r--r--. 2 boinc boinc 251658128 Mar  1 12:08 EVNT.48451780._000001.pool.root.1
[2026-03-01 13:31:19] -rw-r--r--. 1 boinc boinc         0 Mar  1 12:08 boinc_lockfile
[2026-03-01 13:31:19] -rw-r--r--. 1 boinc boinc      2608 Mar  1 12:08 pandaJob.out
[2026-03-01 13:31:19] -rw-------. 1 boinc boinc    998198 Mar  1 12:09 agis_schedconf.cvmfs.json
[2026-03-01 13:31:19] -rw-------. 1 boinc boinc   1513015 Mar  1 12:09 agis_ddmendpoints.agis.ALL.json
[2026-03-01 13:31:19] -rw-------. 1 boinc boinc       444 Mar  1 12:09 workernode_map.json
[2026-03-01 13:31:19] drwx------. 5 boinc boinc      4096 Mar  1 12:09 pilot3
[2026-03-01 13:31:19] -rw-------. 1 boinc boinc 166080342 Mar  1 13:30 HITS.48843780._000024.pool.root.1
[2026-03-01 13:31:19] -rw-r--r--. 1 boinc boinc       529 Mar  1 13:30 boinc_task_state.xml
[2026-03-01 13:31:19] -rw-------. 1 boinc boinc      1031 Mar  1 13:30 memory_monitor_summary.json
[2026-03-01 13:31:19] -rw-------. 1 boinc boinc    282622 Mar  1 13:30 log.48843780._000024.job.log.tgz.1
[2026-03-01 13:31:19] -rw-------. 1 boinc boinc      6335 Mar  1 13:30 heartbeat.json
[2026-03-01 13:31:19] -rw-------. 1 boinc boinc        95 Mar  1 13:31 pilot_heartbeat.json
[2026-03-01 13:31:19] -rw-r--r--. 1 boinc boinc      8192 Mar  1 13:31 boinc_mmap_file
[2026-03-01 13:31:19] -rw-r--r--. 1 boinc boinc        27 Mar  1 13:31 wrapper_checkpoint.txt
[2026-03-01 13:31:19] -rw-------. 1 boinc boinc      5016 Mar  1 13:31 pilotlog.txt
[2026-03-01 13:31:19] -rw-------. 1 boinc boinc    714794 Mar  1 13:31 log.48843780._000024.job.log.1
[2026-03-01 13:31:19] -rw-------. 1 boinc boinc       357 Mar  1 13:31 output.list
[2026-03-01 13:31:19] -rw-r--r--. 1 boinc boinc       620 Mar  1 13:31 runtime_log
[2026-03-01 13:31:19] -rw-------. 1 boinc boinc   1013760 Mar  1 13:31 result.tar.gz
[2026-03-01 13:31:19] -rw-r--r--. 1 boinc boinc      9204 Mar  1 13:31 runtime_log.err
[2026-03-01 13:31:19] -rw-------. 1 boinc boinc       663 Mar  1 13:31 9zKMDmXmlG9n9Rq4apOajLDm4fhM0noT9bVooX4SDmgv6KDmepF7Ho.diag
[2026-03-01 13:31:19] -rw-r--r--. 1 boinc boinc     22612 Mar  1 13:31 stderr.txt
[2026-03-01 13:31:19] HITS file was successfully produced:
[2026-03-01 13:31:19] -rw-------. 1 boinc boinc 166080342 Mar  1 13:30 shared/HITS.pool.root.1
[2026-03-01 13:31:19]  *** Contents of shared directory: ***
[2026-03-01 13:31:19] total 409548
[2026-03-01 13:31:19] -rw-r--r--. 2 boinc boinc     15845 Mar  1 12:08 start_atlas.sh
[2026-03-01 13:31:19] -rw-r--r--. 2 boinc boinc    597956 Mar  1 12:08 input.tar.gz
[2026-03-01 13:31:19] -rw-r--r--. 2 boinc boinc 251658128 Mar  1 12:08 ATLAS.root_0
[2026-03-01 13:31:19] -rw-------. 1 boinc boinc 166080342 Mar  1 13:30 HITS.pool.root.1
[2026-03-01 13:31:19] -rw-------. 1 boinc boinc   1013760 Mar  1 13:31 result.tar.gz
13:31:20 (2177338): run_atlas exited; CPU time 18787.051361
13:31:20 (2177338): called boinc_finish(0)

</stderr_txt>
]]>

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