Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:55:33 (1472): wrapper (7.7.26015): starting
18:55:33 (1472): wrapper: running run_atlas (--nthreads 8)
[2026-03-01 18:55:33] Arguments: --nthreads 8
[2026-03-01 18:55:33] Threads: 8
[2026-03-01 18:55:33] Checking for CVMFS
[2026-03-01 18:55:34] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-01 18:55:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-01 18:55:35] Running cvmfs_config stat atlas.cern.ch
[2026-03-01 18:55:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-01 18:55:36] 2.11.2.0 3310 6371 80992 156778 2 54 16758994 25165825 899 130560 152 1430523 99.968 237514 12 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-01 18:55:36] CVMFS is ok
[2026-03-01 18:55:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-01 18:55:36] Checking for apptainer binary...
[2026-03-01 18:55:36] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-01 18:55:36] Running /usr/bin/apptainer --version
[2026-03-01 18:55:36] apptainer version 1.3.2-1.el7
[2026-03-01 18:55:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-01 18:55:55] cg-vwn451.simple-grid.lan
[2026-03-01 18:55:55] apptainer works
[2026-03-01 18:55:55] Set ATHENA_PROC_NUMBER=8
[2026-03-01 18:55:55] Set ATHENA_CORE_NUMBER=8
[2026-03-01 18:55:55] Starting ATLAS job with PandaID=7034242356
[2026-03-01 18:55:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/26 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-01 22:35:30]  *** The last 200 lines of the pilot log: ***
[2026-03-01 22:35:30] 2026-03-01 21:34:16,969 | INFO     | total number of processed events: 400 (read)
[2026-03-01 22:35:30] 2026-03-01 21:34:16,971 | INFO     | using path: /var/lib/boinc/slots/26/PanDA_Pilot-7034242356/memory_monitor_summary.json (trf name=prmon)
[2026-03-01 22:35:30] 2026-03-01 21:34:16,972 | INFO     | extracted standard info from prmon json
[2026-03-01 22:35:30] 2026-03-01 21:34:16,972 | INFO     | extracted standard memory fields from prmon json
[2026-03-01 22:35:30] 2026-03-01 21:34:16,972 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-01 22:35:30] 2026-03-01 21:34:16,972 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-01 22:35:30] 2026-03-01 21:34:16,972 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-01 22:35:30] 2026-03-01 21:34:16,976 | INFO     | fitting pss+swap vs Time
[2026-03-01 22:35:30] 2026-03-01 21:34:16,977 | INFO     | sum of square deviations: 2632440055.0
[2026-03-01 22:35:30] 2026-03-01 21:34:16,979 | INFO     | sum of deviations: 88657301241.00002
[2026-03-01 22:35:30] 2026-03-01 21:34:16,979 | INFO     | mean x: 1772394602.5
[2026-03-01 22:35:30] 2026-03-01 21:34:16,979 | INFO     | mean y: 2399577.8725490198
[2026-03-01 22:35:30] 2026-03-01 21:34:16,979 | INFO     | intersect: -59689642371.30869
[2026-03-01 22:35:30] 2026-03-01 21:34:16,979 | INFO     | chi2: 8.238051910071295
[2026-03-01 22:35:30] 2026-03-01 21:34:16,980 | INFO     | sum of square deviations: 2443580700.0
[2026-03-01 22:35:30] 2026-03-01 21:34:16,982 | INFO     | sum of deviations: 99864700883.99998
[2026-03-01 22:35:30] 2026-03-01 21:34:16,982 | INFO     | mean x: 1772394450.0
[2026-03-01 22:35:30] 2026-03-01 21:34:16,982 | INFO     | mean y: 2408411.472361809
[2026-03-01 22:35:30] 2026-03-01 21:34:16,982 | INFO     | intersect: -72432130622.86836
[2026-03-01 22:35:30] 2026-03-01 21:34:16,982 | INFO     | chi2: 7.543218249460382
[2026-03-01 22:35:30] 2026-03-01 21:34:16,983 | INFO     | current chi2=7.543218249460382 (change=8.434441397018343 %)
[2026-03-01 22:35:30] 2026-03-01 21:34:16,983 | INFO     | right removable region: 198
[2026-03-01 22:35:30] 2026-03-01 21:34:16,983 | INFO     | sum of square deviations: 2443580700.0
[2026-03-01 22:35:30] 2026-03-01 21:34:16,985 | INFO     | sum of deviations: 18572238303.000008
[2026-03-01 22:35:30] 2026-03-01 21:34:16,993 | INFO     | mean x: 1772394755.0
[2026-03-01 22:35:30] 2026-03-01 21:34:16,993 | INFO     | mean y: 2456129.341708543
[2026-03-01 22:35:30] 2026-03-01 21:34:16,993 | INFO     | intersect: -13468487456.375477
[2026-03-01 22:35:30] 2026-03-01 21:34:16,994 | INFO     | chi2: 3.1305442726622297
[2026-03-01 22:35:30] 2026-03-01 21:34:16,994 | INFO     | current chi2=3.1305442726622297 (change=61.99897370353986 %)
[2026-03-01 22:35:30] 2026-03-01 21:34:16,994 | INFO     | sum of square deviations: 2263977332.5
[2026-03-01 22:35:30] 2026-03-01 21:34:16,989 | INFO     | monitor loop #985: job 0:7034242356 is in state 'finished'
[2026-03-01 22:35:30] 2026-03-01 21:34:17,003 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-01 22:35:30] 2026-03-01 21:34:16,996 | INFO     | sum of deviations: -27053602358.0
[2026-03-01 22:35:30] 2026-03-01 21:34:17,004 | INFO     | mean x: 1772394907.5
[2026-03-01 22:35:30] 2026-03-01 21:34:17,004 | INFO     | mean y: 2494730.319587629
[2026-03-01 22:35:30] 2026-03-01 21:34:17,004 | INFO     | intersect: 21181888340.193195
[2026-03-01 22:35:30] 2026-03-01 21:34:17,005 | INFO     | chi2: 0.9738416868399526
[2026-03-01 22:35:30] 2026-03-01 21:34:17,005 | INFO     | current chi2=0.9738416868399526 (change=68.89225636116646 %)
[2026-03-01 22:35:30] 2026-03-01 21:34:17,005 | INFO     | sum of square deviations: 2093397390.0
[2026-03-01 22:35:30] 2026-03-01 21:34:17,007 | INFO     | sum of deviations: -35143289317.0
[2026-03-01 22:35:30] 2026-03-01 21:34:17,007 | INFO     | mean x: 1772395060.0
[2026-03-01 22:35:30] 2026-03-01 21:34:17,007 | INFO     | mean y: 2501888.4232804235
[2026-03-01 22:35:30] 2026-03-01 21:34:17,007 | INFO     | intersect: 29756906224.23912
[2026-03-01 22:35:30] 2026-03-01 21:34:17,008 | INFO     | chi2: 0.8564639088829162
[2026-03-01 22:35:30] 2026-03-01 21:34:17,008 | INFO     | current chi2=0.8564639088829162 (change=12.053065661824252 %)
[2026-03-01 22:35:30] 2026-03-01 21:34:17,008 | INFO     | left removable region: 30
[2026-03-01 22:35:30] 2026-03-01 21:34:17,008 | INFO     | sum of square deviations: 1470248962.0
[2026-03-01 22:35:30] 2026-03-01 21:34:17,010 | INFO     | sum of deviations: -14476958742.5
[2026-03-01 22:35:30] 2026-03-01 21:34:17,010 | INFO     | mean x: 1772395334.5
[2026-03-01 22:35:30] 2026-03-01 21:34:17,010 | INFO     | mean y: 2506624.089285714
[2026-03-01 22:35:30] 2026-03-01 21:34:17,010 | INFO     | intersect: 17454580929.961838
[2026-03-01 22:35:30] 2026-03-01 21:34:17,010 | INFO     | chi2: 0.0525124079348223
[2026-03-01 22:35:30] 2026-03-01 21:34:17,011 | INFO     | current memory leak: -9.85 B/s (using 168 data points, chi2=0.05)
[2026-03-01 22:35:30] 2026-03-01 21:34:17,011 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2026-03-01 22:35:30] 2026-03-01 21:34:17,011 | INFO     | ..............................
[2026-03-01 22:35:30] 2026-03-01 21:34:17,012 | INFO     | . Timing measurements:
[2026-03-01 22:35:30] 2026-03-01 21:34:17,012 | INFO     | . get job = 0 s
[2026-03-01 22:35:30] 2026-03-01 21:34:17,012 | INFO     | . initial setup = 122 s
[2026-03-01 22:35:30] 2026-03-01 21:34:17,012 | INFO     | . payload setup = 157 s
[2026-03-01 22:35:30] 2026-03-01 21:34:17,012 | INFO     | . stage-in = 0 s
[2026-03-01 22:35:30] 2026-03-01 21:34:17,012 | INFO     | . payload execution = 12559 s
[2026-03-01 22:35:30] 2026-03-01 21:34:17,012 | INFO     | . stage-out = 3 s
[2026-03-01 22:35:30] 2026-03-01 21:34:17,012 | INFO     | . log creation = 1 s
[2026-03-01 22:35:30] 2026-03-01 21:34:17,012 | INFO     | ..............................
[2026-03-01 22:35:30] 2026-03-01 21:34:17,599 | INFO     | 
[2026-03-01 22:35:30] 2026-03-01 21:34:17,599 | INFO     | job summary report
[2026-03-01 22:35:30] 2026-03-01 21:34:17,599 | INFO     | --------------------------------------------------
[2026-03-01 22:35:30] 2026-03-01 21:34:17,599 | INFO     | PanDA job id: 7034242356
[2026-03-01 22:35:30] 2026-03-01 21:34:17,600 | INFO     | task id: 48700946
[2026-03-01 22:35:30] 2026-03-01 21:34:17,600 | INFO     | errors: (none)
[2026-03-01 22:35:30] 2026-03-01 21:34:17,600 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-01 22:35:30] 2026-03-01 21:34:17,600 | INFO     | pilot state: finished 
[2026-03-01 22:35:30] 2026-03-01 21:34:17,600 | INFO     | transexitcode: 0
[2026-03-01 22:35:30] 2026-03-01 21:34:17,600 | INFO     | exeerrorcode: 0
[2026-03-01 22:35:30] 2026-03-01 21:34:17,600 | INFO     | exeerrordiag: 
[2026-03-01 22:35:30] 2026-03-01 21:34:17,600 | INFO     | exitcode: 0
[2026-03-01 22:35:30] 2026-03-01 21:34:17,600 | INFO     | exitmsg: OK
[2026-03-01 22:35:30] 2026-03-01 21:34:17,601 | INFO     | cpuconsumptiontime: 46477 s
[2026-03-01 22:35:30] 2026-03-01 21:34:17,601 | INFO     | nevents: 400
[2026-03-01 22:35:30] 2026-03-01 21:34:17,601 | INFO     | neventsw: 0
[2026-03-01 22:35:30] 2026-03-01 21:34:17,601 | INFO     | pid: 9950
[2026-03-01 22:35:30] 2026-03-01 21:34:17,601 | INFO     | pgrp: 9950
[2026-03-01 22:35:30] 2026-03-01 21:34:17,601 | INFO     | corecount: 8
[2026-03-01 22:35:30] 2026-03-01 21:34:17,601 | INFO     | event service: False
[2026-03-01 22:35:30] 2026-03-01 21:34:17,601 | INFO     | sizes: {0: 2281102, 1: 2281788, 2: 2282189, 3: 2282249, 14: 2282277, 12720: 2312294, 12724: 2321350, 12726: 2321488}
[2026-03-01 22:35:30] 2026-03-01 21:34:17,601 | INFO     | --------------------------------------------------
[2026-03-01 22:35:30] 2026-03-01 21:34:17,602 | INFO     | 
[2026-03-01 22:35:30] 2026-03-01 21:34:17,602 | INFO     | executing command: ls -lF /var/lib/boinc/slots/26
[2026-03-01 22:35:30] 2026-03-01 21:34:18,170 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-01 22:35:30] 2026-03-01 21:34:18,171 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-01 22:35:30] 2026-03-01 21:34:18,171 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-01 22:35:30] 2026-03-01 21:34:18,171 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-01 22:35:30] 2026-03-01 21:34:18,171 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-01 22:35:30] 2026-03-01 21:34:18,171 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-01 22:35:30] 2026-03-01 21:34:18,171 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-01 22:35:30] 2026-03-01 21:34:18,171 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-01 22:35:30] 2026-03-01 21:34:18,172 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-01 22:35:30] 2026-03-01 21:34:18,172 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-01 22:35:30] 2026-03-01 21:34:18,172 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-01 22:35:30] 2026-03-01 21:34:18,172 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-01 22:35:30] 2026-03-01 21:34:18,172 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-01 22:35:30] 2026-03-01 21:34:18,172 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-01 22:35:30] 2026-03-01 21:34:18,172 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-01 22:35:30] 2026-03-01 21:34:18,172 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-01 22:35:30] 2026-03-01 21:34:18,173 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-01 22:35:30] 2026-03-01 21:34:18,173 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-01 22:35:30] 2026-03-01 21:34:18,173 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-01 22:35:30] 2026-03-01 21:34:18,173 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-01 22:35:30] 2026-03-01 21:34:18,173 | INFO     | job 7034242356 has completed (purged errors)
[2026-03-01 22:35:30] 2026-03-01 21:34:18,173 | INFO     | overall cleanup function is called
[2026-03-01 22:35:30] 2026-03-01 21:34:19,182 | INFO     | --- collectZombieJob: --- 10, [9950]
[2026-03-01 22:35:30] 2026-03-01 21:34:19,182 | INFO     | zombie collector waiting for pid 9950
[2026-03-01 22:35:30] 2026-03-01 21:34:19,182 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-01 22:35:30] 2026-03-01 21:34:19,183 | INFO     | collected zombie processes
[2026-03-01 22:35:30] 2026-03-01 21:34:19,183 | INFO     | will attempt to kill all subprocesses of pid=9950
[2026-03-01 22:35:30] 2026-03-01 21:34:19,268 | INFO     | process IDs to be killed: [9950] (in reverse order)
[2026-03-01 22:35:30] 2026-03-01 21:34:19,945 | WARNING  | found no corresponding commands to process id(s)
[2026-03-01 22:35:30] 2026-03-01 21:34:19,946 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-01 22:35:30] 2026-03-01 21:34:19,948 | INFO     | did not find any defunct processes belonging to 9950
[2026-03-01 22:35:30] 2026-03-01 21:34:19,950 | INFO     | did not find any defunct processes belonging to 9950
[2026-03-01 22:35:30] 2026-03-01 21:34:19,950 | INFO     | ready for new job
[2026-03-01 22:35:30] 2026-03-01 21:34:19,950 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-01 22:35:30] 2026-03-01 21:34:19,952 | INFO     | **************************************
[2026-03-01 22:35:30] 2026-03-01 21:34:19,952 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-01 22:35:30] 2026-03-01 21:34:19,953 | INFO     | **************************************
[2026-03-01 22:35:30] 2026-03-01 21:34:19,953 | INFO     | 
[2026-03-01 22:35:30] 2026-03-01 21:34:19,953 | INFO     | pilot is running in a VM
[2026-03-01 22:35:30] 2026-03-01 21:34:19,953 | INFO     | architecture information:
[2026-03-01 22:35:30] 2026-03-01 21:34:19,954 | INFO     | executing command: cat /etc/os-release
[2026-03-01 22:35:30] 2026-03-01 21:34:20,074 | INFO     | cat /etc/os-release:
[2026-03-01 22:35:30] NAME="CentOS Linux"
[2026-03-01 22:35:30] VERSION="7 (Core)"
[2026-03-01 22:35:30] ID="centos"
[2026-03-01 22:35:30] ID_LIKE="rhel fedora"
[2026-03-01 22:35:30] VERSION_ID="7"
[2026-03-01 22:35:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-01 22:35:30] ANSI_COLOR="0;31"
[2026-03-01 22:35:30] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-01 22:35:30] HOME_URL="https://www.centos.org/"
[2026-03-01 22:35:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-01 22:35:30] 
[2026-03-01 22:35:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-01 22:35:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-01 22:35:30] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-01 22:35:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-01 22:35:30] 
[2026-03-01 22:35:30] 2026-03-01 21:34:20,075 | INFO     | **************************************
[2026-03-01 22:35:30] 2026-03-01 21:34:20,578 | INFO     | executing command: df -mP /var/lib/boinc/slots/26
[2026-03-01 22:35:30] 2026-03-01 21:34:20,860 | INFO     | sufficient remaining disk space (497257807872 B)
[2026-03-01 22:35:30] 2026-03-01 21:34:20,861 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-01 22:35:30] 2026-03-01 21:34:20,861 | INFO     | current server update state: UPDATING_FINAL
[2026-03-01 22:35:30] 2026-03-01 21:34:20,861 | INFO     | update_server=False
[2026-03-01 22:35:30] 2026-03-01 21:34:20,861 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-01 22:35:30] 2026-03-01 21:34:20,862 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-01 22:35:30] 2026-03-01 21:34:20,862 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-01 22:35:30] 2026-03-01 21:34:20,863 | INFO     | aborting loop
[2026-03-01 22:35:30] 2026-03-01 21:34:20,862 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-01 22:35:30] 2026-03-01 21:34:21,264 | INFO     | all payload control threads have been joined
[2026-03-01 22:35:30] 2026-03-01 21:34:21,599 | INFO     | all data control threads have been joined
[2026-03-01 22:35:30] 2026-03-01 21:34:21,867 | INFO     | [job] retrieve thread has finished
[2026-03-01 22:35:30] 2026-03-01 21:34:21,868 | INFO     | [job] job monitor thread has finished
[2026-03-01 22:35:30] 2026-03-01 21:34:22,175 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-01 22:35:30] 2026-03-01 21:34:22,270 | INFO     | [payload] control thread has finished
[2026-03-01 22:35:30] 2026-03-01 21:34:22,353 | INFO     | [payload] execute_payloads thread has finished
[2026-03-01 22:35:30] 2026-03-01 21:34:22,360 | INFO     | [job] create_data_payload thread has finished
[2026-03-01 22:35:30] 2026-03-01 21:34:22,361 | INFO     | all job control threads have been joined
[2026-03-01 22:35:30] 2026-03-01 21:34:22,364 | INFO     | [payload] validate_pre thread has finished
[2026-03-01 22:35:30] 2026-03-01 21:34:22,605 | INFO     | [data] control thread has finished
[2026-03-01 22:35:30] 2026-03-01 21:34:22,671 | INFO     | [data] copytool_in thread has finished
[2026-03-01 22:35:30] 2026-03-01 21:34:22,729 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-01 22:35:30] 2026-03-01 21:34:22,869 | INFO     | [data] copytool_out thread has finished
[2026-03-01 22:35:30] 2026-03-01 21:34:22,882 | INFO     | [payload] failed_post thread has finished
[2026-03-01 22:35:30] 2026-03-01 21:34:23,092 | INFO     | [job] validate thread has finished
[2026-03-01 22:35:30] 2026-03-01 21:34:23,172 | INFO     | [payload] validate_post thread has finished
[2026-03-01 22:35:30] 2026-03-01 21:34:23,181 | INFO     | [job] queue monitor thread has finished
[2026-03-01 22:35:30] 2026-03-01 21:34:23,367 | INFO     | [job] control thread has finished
[2026-03-01 22:35:30] 2026-03-01 21:34:24,871 | INFO     | [data] queue_monitor thread has finished
[2026-03-01 22:35:30] 2026-03-01 21:34:49,381 | INFO     | PID=5504 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-01 22:35:30] 2026-03-01 21:34:49,382 | INFO     | .. there are 2 such processes running
[2026-03-01 22:35:30] 2026-03-01 21:34:49,383 | INFO     | found 0 job(s) in 20 queues
[2026-03-01 22:35:30] 2026-03-01 21:34:49,383 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-01 22:35:30] 2026-03-01 21:34:49,383 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-01 22:35:30] 2026-03-01 21:35:18,142 | INFO     | [monitor] cgroup control has ended
[2026-03-01 22:35:30] 2026-03-01 21:35:19,846 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140572050384704)>', '<ExcThread(monitor, started 140571360343808)>']
[2026-03-01 22:35:30] 2026-03-01 21:35:20,568 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-01 22:35:30] 2026-03-01 21:35:20,568 | INFO     | [monitor] control thread has ended
[2026-03-01 22:35:30] 2026-03-01 21:35:24,872 | INFO     | all workflow threads have been joined
[2026-03-01 22:35:30] 2026-03-01 21:35:24,872 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-01 22:35:30] 2026-03-01 21:35:24,872 | INFO     | traces error code: 0
[2026-03-01 22:35:30] 2026-03-01 21:35:24,873 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-01 22:35:30] 2026-03-01 21:35:25,258 [wrapper] ==== pilot stdout END ====
[2026-03-01 22:35:30] 2026-03-01 21:35:25,367 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-01 22:35:30] 2026-03-01 21:35:25,486 [wrapper] pilotpid: 5504
[2026-03-01 22:35:30] 2026-03-01 21:35:25,586 [wrapper] Pilot exit status: 0
[2026-03-01 22:35:30] 2026-03-01 21:35:25,975 [wrapper] pandaids: 7034242356
[2026-03-01 22:35:30] 2026-03-01 21:35:27,007 [wrapper] cleanup supervisor_pilot 15589 5505
[2026-03-01 22:35:30] 2026-03-01 21:35:27,193 [wrapper] Test setup, not cleaning
[2026-03-01 22:35:30] 2026-03-01 21:35:27,284 [wrapper] apfmon messages muted
[2026-03-01 22:35:30] 2026-03-01 21:35:27,397 [wrapper] ==== wrapper stdout END ====
[2026-03-01 22:35:30] 2026-03-01 21:35:27,493 [wrapper] ==== wrapper stderr END ====
[2026-03-01 22:35:30]  *** Error codes and diagnostics ***
[2026-03-01 22:35:30]     "exeErrorCode": 0,
[2026-03-01 22:35:30]     "exeErrorDiag": "",
[2026-03-01 22:35:30]     "pilotErrorCode": 0,
[2026-03-01 22:35:30]     "pilotErrorDiag": "",
[2026-03-01 22:35:30]  *** Listing of results directory ***
[2026-03-01 22:35:30] total 339520
[2026-03-01 22:35:30] -rw-r--r--. 1 boinc boinc    584627 Mar  1 03:30 pilot3.tar.gz
[2026-03-01 22:35:30] -rwx------. 1 boinc boinc     36322 Mar  1 03:31 runpilot2-wrapper.sh
[2026-03-01 22:35:30] -rw-r--r--. 1 boinc boinc      5111 Mar  1 03:31 queuedata.json
[2026-03-01 22:35:30] -rw-r--r--. 1 boinc boinc       100 Mar  1 18:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-01 22:35:30] -rwxr-xr-x. 1 boinc boinc      7986 Mar  1 18:55 run_atlas
[2026-03-01 22:35:30] -rw-r--r--. 1 boinc boinc       105 Mar  1 18:55 job.xml
[2026-03-01 22:35:30] -rw-r--r--. 1 boinc boinc      6392 Mar  1 18:55 init_data.xml
[2026-03-01 22:35:30] -rw-r--r--. 2 boinc boinc 189929525 Mar  1 18:55 EVNT.48700944._000091.pool.root.1
[2026-03-01 22:35:30] -rw-r--r--. 2 boinc boinc     15845 Mar  1 18:55 start_atlas.sh
[2026-03-01 22:35:30] drwxrwx--x. 2 boinc boinc        68 Mar  1 18:55 shared
[2026-03-01 22:35:30] -rw-r--r--. 2 boinc boinc    597931 Mar  1 18:55 input.tar.gz
[2026-03-01 22:35:30] -rw-r--r--. 1 boinc boinc         0 Mar  1 18:55 boinc_lockfile
[2026-03-01 22:35:30] -rw-r--r--. 1 boinc boinc      2499 Mar  1 18:55 pandaJob.out
[2026-03-01 22:35:30] -rw-------. 1 boinc boinc       415 Mar  1 19:01 workernode_map.json
[2026-03-01 22:35:30] -rw-------. 1 boinc boinc    998184 Mar  1 19:01 agis_schedconf.cvmfs.json
[2026-03-01 22:35:30] drwx------. 5 boinc boinc      4096 Mar  1 19:01 pilot3
[2026-03-01 22:35:30] -rw-------. 1 boinc boinc 149335922 Mar  1 22:32 HITS.48700946._002337.pool.root.1
[2026-03-01 22:35:30] -rw-r--r--. 1 boinc boinc       531 Mar  1 22:33 boinc_task_state.xml
[2026-03-01 22:35:30] -rw-------. 1 boinc boinc      1012 Mar  1 22:34 memory_monitor_summary.json
[2026-03-01 22:35:30] -rw-------. 1 boinc boinc   1513015 Mar  1 22:34 agis_ddmendpoints.agis.ALL.json
[2026-03-01 22:35:30] -rw-------. 1 boinc boinc    446981 Mar  1 22:34 log.48700946._002337.job.log.tgz.1
[2026-03-01 22:35:30] -rw-------. 1 boinc boinc      6322 Mar  1 22:34 heartbeat.json
[2026-03-01 22:35:30] -rw-------. 1 boinc boinc        95 Mar  1 22:34 pilot_heartbeat.json
[2026-03-01 22:35:30] -rw-r--r--. 1 boinc boinc        28 Mar  1 22:35 wrapper_checkpoint.txt
[2026-03-01 22:35:30] -rw-r--r--. 1 boinc boinc      8192 Mar  1 22:35 boinc_mmap_file
[2026-03-01 22:35:30] -rw-------. 1 boinc boinc      4880 Mar  1 22:35 pilotlog.txt
[2026-03-01 22:35:30] -rw-------. 1 boinc boinc   1794427 Mar  1 22:35 log.48700946._002337.job.log.1
[2026-03-01 22:35:30] -rw-------. 1 boinc boinc       357 Mar  1 22:35 output.list
[2026-03-01 22:35:30] -rw-r--r--. 1 boinc boinc       620 Mar  1 22:35 runtime_log
[2026-03-01 22:35:30] -rw-------. 1 boinc boinc   2263040 Mar  1 22:35 result.tar.gz
[2026-03-01 22:35:30] -rw-r--r--. 1 boinc boinc      8832 Mar  1 22:35 runtime_log.err
[2026-03-01 22:35:30] -rw-------. 1 boinc boinc       655 Mar  1 22:35 1SVLDmlllG9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmpf8KDmOgA11m.diag
[2026-03-01 22:35:30] -rw-r--r--. 1 boinc boinc     20726 Mar  1 22:35 stderr.txt
[2026-03-01 22:35:30] HITS file was successfully produced:
[2026-03-01 22:35:30] -rw-------. 1 boinc boinc 149335922 Mar  1 22:32 shared/HITS.pool.root.1
[2026-03-01 22:35:30]  *** Contents of shared directory: ***
[2026-03-01 22:35:30] total 334128
[2026-03-01 22:35:30] -rw-r--r--. 2 boinc boinc 189929525 Mar  1 18:55 ATLAS.root_0
[2026-03-01 22:35:30] -rw-r--r--. 2 boinc boinc     15845 Mar  1 18:55 start_atlas.sh
[2026-03-01 22:35:30] -rw-r--r--. 2 boinc boinc    597931 Mar  1 18:55 input.tar.gz
[2026-03-01 22:35:30] -rw-------. 1 boinc boinc 149335922 Mar  1 22:32 HITS.pool.root.1
[2026-03-01 22:35:30] -rw-------. 1 boinc boinc   2263040 Mar  1 22:35 result.tar.gz
22:35:32 (1472): run_atlas exited; CPU time 46613.492680
22:35:32 (1472): called boinc_finish(0)

</stderr_txt>
]]>

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