Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:01 (131122): wrapper (7.7.26015): starting
00:04:01 (131122): wrapper: running run_atlas (--nthreads 9)
[2026-03-01 00:04:01] Arguments: --nthreads 9
[2026-03-01 00:04:01] Threads: 9
[2026-03-01 00:04:01] Checking for CVMFS
[2026-03-01 00:04:02] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-01 00:04:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-01 00:04:02] Running cvmfs_config stat atlas.cern.ch
[2026-03-01 00:04:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-01 00:04:03] 2.13.3.0 2758065 35094 441584 156757 3 532 32008536 32935936 42122 16776704 0 125014309 99.534 157177801 29591 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-01 00:04:03] CVMFS is ok
[2026-03-01 00:04:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-01 00:04:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-01 00:04:03] Further information can be found at the LHC@home message board.
[2026-03-01 00:04:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-01 00:04:03] Checking for apptainer binary...
[2026-03-01 00:04:03] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-01 00:04:03] Running /usr/bin/apptainer --version
[2026-03-01 00:04:03] apptainer version 1.4.5-2.el9
[2026-03-01 00:04:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-01 00:04:04] c6-12-29-1.aglt2.org
[2026-03-01 00:04:04] apptainer works
[2026-03-01 00:04:04] Set ATHENA_PROC_NUMBER=9
[2026-03-01 00:04:04] Set ATHENA_CORE_NUMBER=9
[2026-03-01 00:04:04] Starting ATLAS job with PandaID=7033996708
[2026-03-01 00:04:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
06:00:07 (131122): BOINC client no longer exists - exiting
06:00:07 (131122): timer handler: client dead, exiting
06:01:05 (1655280): wrapper (7.7.26015): starting
06:01:05 (1655280): wrapper: running run_atlas (--nthreads 9)
[2026-03-01 06:01:05] Arguments: --nthreads 9
[2026-03-01 06:01:05] Threads: 9
[2026-03-01 06:01:05] This job has been restarted, cleaning up previous attempt
[2026-03-01 06:01:05] Checking for CVMFS
[2026-03-01 06:01:05] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-01 06:01:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-01 06:01:06] Running cvmfs_config stat atlas.cern.ch
[2026-03-01 06:01:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-01 06:01:07] 2.13.3.0 2758065 35451 434320 156766 3 386 19844002 32935937 40271 16776704 0 126898830 99.538 157971437 29582 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-01 06:01:07] CVMFS is ok
[2026-03-01 06:01:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-01 06:01:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-01 06:01:07] Further information can be found at the LHC@home message board.
[2026-03-01 06:01:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-01 06:01:07] Checking for apptainer binary...
[2026-03-01 06:01:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-01 06:01:07] Running /usr/bin/apptainer --version
[2026-03-01 06:01:07] apptainer version 1.4.5-2.el9
[2026-03-01 06:01:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-01 06:01:07] c6-12-29-1.aglt2.org
[2026-03-01 06:01:07] apptainer works
[2026-03-01 06:01:08] Set ATHENA_PROC_NUMBER=9
[2026-03-01 06:01:08] Set ATHENA_CORE_NUMBER=9
[2026-03-01 06:01:08] Starting ATLAS job with PandaID=7033996708
[2026-03-01 06:01:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-01 14:21:14]  *** The last 200 lines of the pilot log: ***
[2026-03-01 14:21:14] 2026-03-01 19:20:37,995 | INFO     | log transfer has been attempted: DONE
[2026-03-01 14:21:14] 2026-03-01 19:20:37,995 | INFO     | job 7033996708 has finished - writing final server update
[2026-03-01 14:21:14] 2026-03-01 19:20:37,995 | INFO     | total number of processed events: 400 (read)
[2026-03-01 14:21:14] 2026-03-01 19:20:38,060 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-7033996708/memory_monitor_summary.json (trf name=prmon)
[2026-03-01 14:21:14] 2026-03-01 19:20:38,060 | INFO     | extracted standard info from prmon json
[2026-03-01 14:21:14] 2026-03-01 19:20:38,061 | INFO     | extracted standard memory fields from prmon json
[2026-03-01 14:21:14] 2026-03-01 19:20:38,061 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-01 14:21:14] 2026-03-01 19:20:38,071 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-01 14:21:14] 2026-03-01 19:20:38,072 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-01 14:21:14] 2026-03-01 19:20:38,101 | INFO     | fitting pss+swap vs Time
[2026-03-01 14:21:14] 2026-03-01 19:20:38,102 | INFO     | sum of square deviations: 36258660579.72172
[2026-03-01 14:21:14] 2026-03-01 19:20:38,129 | INFO     | sum of deviations: 74171195419.61565
[2026-03-01 14:21:14] 2026-03-01 19:20:38,133 | INFO     | mean x: 1772377891.615542
[2026-03-01 14:21:14] 2026-03-01 19:20:38,134 | INFO     | mean y: 2562513.9979550103
[2026-03-01 14:21:14] 2026-03-01 19:20:38,134 | INFO     | intersect: -3623037131.8406906
[2026-03-01 14:21:14] 2026-03-01 19:20:38,135 | INFO     | chi2: 4.376833392304784
[2026-03-01 14:21:14] 2026-03-01 19:20:38,135 | INFO     | sum of square deviations: 35157846343.04952
[2026-03-01 14:21:14] 2026-03-01 19:20:38,158 | INFO     | sum of deviations: 169441759770.03717
[2026-03-01 14:21:14] 2026-03-01 19:20:38,159 | INFO     | mean x: 1772377739.1198347
[2026-03-01 14:21:14] 2026-03-01 19:20:38,159 | INFO     | mean y: 2575656.964876033
[2026-03-01 14:21:14] 2026-03-01 19:20:38,159 | INFO     | intersect: -8539324212.651993
[2026-03-01 14:21:14] 2026-03-01 19:20:38,159 | INFO     | chi2: 2.247537377542334
[2026-03-01 14:21:14] 2026-03-01 19:20:38,160 | INFO     | current chi2=2.247537377542334 (change=48.649236192223206 %)
[2026-03-01 14:21:14] 2026-03-01 19:20:38,160 | INFO     | sum of square deviations: 34079425081.319355
[2026-03-01 14:21:14] 2026-03-01 19:20:38,198 | INFO     | sum of deviations: 167476279741.98724
[2026-03-01 14:21:14] 2026-03-01 19:20:38,199 | INFO     | mean x: 1772377586.6158664
[2026-03-01 14:21:14] 2026-03-01 19:20:38,199 | INFO     | mean y: 2575379.0542797493
[2026-03-01 14:21:14] 2026-03-01 19:20:38,199 | INFO     | intersect: -8707407368.48964
[2026-03-01 14:21:14] 2026-03-01 19:20:38,200 | INFO     | chi2: 2.2475240770902367
[2026-03-01 14:21:14] 2026-03-01 19:20:38,200 | INFO     | current chi2=2.2475240770902367 (change=0.0005917789056753482 %)
[2026-03-01 14:21:14] 2026-03-01 19:20:38,200 | INFO     | right removable region: 478
[2026-03-01 14:21:14] 2026-03-01 19:20:38,200 | INFO     | sum of square deviations: 35157692317.80789
[2026-03-01 14:21:14] 2026-03-01 19:20:38,205 | INFO     | sum of deviations: -37797140299.44834
[2026-03-01 14:21:14] 2026-03-01 19:20:38,206 | INFO     | mean x: 1772378044.1219008
[2026-03-01 14:21:14] 2026-03-01 19:20:38,206 | INFO     | mean y: 2577983.617768595
[2026-03-01 14:21:14] 2026-03-01 19:20:38,206 | INFO     | intersect: 1908016514.445501
[2026-03-01 14:21:14] 2026-03-01 19:20:38,206 | INFO     | chi2: 2.2935951755755983
[2026-03-01 14:21:14] 2026-03-01 19:20:38,207 | INFO     | current chi2=2.2935951755755983 (change=47.5969275045258 %)
[2026-03-01 14:21:14] 2026-03-01 19:20:38,207 | INFO     | sum of square deviations: 34079236105.853924
[2026-03-01 14:21:14] 2026-03-01 19:20:38,212 | INFO     | sum of deviations: -65612549562.49686
[2026-03-01 14:21:14] 2026-03-01 19:20:38,212 | INFO     | mean x: 1772378196.6283925
[2026-03-01 14:21:14] 2026-03-01 19:20:38,212 | INFO     | mean y: 2581907.5365344468
[2026-03-01 14:21:14] 2026-03-01 19:20:38,213 | INFO     | intersect: 3414931054.934048
[2026-03-01 14:21:14] 2026-03-01 19:20:38,213 | INFO     | chi2: 2.167478439792527
[2026-03-01 14:21:14] 2026-03-01 19:20:38,213 | INFO     | current chi2=2.167478439792527 (change=5.498648459243525 %)
[2026-03-01 14:21:14] 2026-03-01 19:20:38,213 | INFO     | left removable region: 20
[2026-03-01 14:21:14] 2026-03-01 19:20:38,214 | INFO     | sum of square deviations: 29790535782.489002
[2026-03-01 14:21:14] 2026-03-01 19:20:38,218 | INFO     | sum of deviations: 18908432720.471603
[2026-03-01 14:21:14] 2026-03-01 19:20:38,219 | INFO     | mean x: 1772378166.1441047
[2026-03-01 14:21:14] 2026-03-01 19:20:38,219 | INFO     | mean y: 2596917.174672489
[2026-03-01 14:21:14] 2026-03-01 19:20:38,219 | INFO     | intersect: -1122354092.5841937
[2026-03-01 14:21:14] 2026-03-01 19:20:38,219 | INFO     | chi2: 0.0023034552441052636
[2026-03-01 14:21:14] 2026-03-01 19:20:38,220 | INFO     | current memory leak: 0.63 B/s (using 458 data points, chi2=0.00)
[2026-03-01 14:21:14] 2026-03-01 19:20:38,220 | INFO     | could have reported an average CPU frequency of 2643 MHz (20 samples)
[2026-03-01 14:21:14] 2026-03-01 19:20:38,221 | INFO     | ..............................
[2026-03-01 14:21:14] 2026-03-01 19:20:38,221 | INFO     | . Timing measurements:
[2026-03-01 14:21:14] 2026-03-01 19:20:38,221 | INFO     | . get job = 0 s
[2026-03-01 14:21:14] 2026-03-01 19:20:38,221 | INFO     | . initial setup = 3 s
[2026-03-01 14:21:14] 2026-03-01 19:20:38,221 | INFO     | . payload setup = 38 s
[2026-03-01 14:21:14] 2026-03-01 19:20:38,221 | INFO     | . stage-in = 0 s
[2026-03-01 14:21:14] 2026-03-01 19:20:38,221 | INFO     | . payload execution = 29842 s
[2026-03-01 14:21:14] 2026-03-01 19:20:38,221 | INFO     | . stage-out = 5 s
[2026-03-01 14:21:14] 2026-03-01 19:20:38,221 | INFO     | . log creation = 1 s
[2026-03-01 14:21:14] 2026-03-01 19:20:38,221 | INFO     | ..............................
[2026-03-01 14:21:14] 2026-03-01 19:20:38,475 | INFO     | time since job start (29912s) is within the limit (349056.0s)
[2026-03-01 14:21:14] 2026-03-01 19:20:39,129 | INFO     | 
[2026-03-01 14:21:14] 2026-03-01 19:20:39,129 | INFO     | job summary report
[2026-03-01 14:21:14] 2026-03-01 19:20:39,129 | INFO     | --------------------------------------------------
[2026-03-01 14:21:14] 2026-03-01 19:20:39,129 | INFO     | PanDA job id: 7033996708
[2026-03-01 14:21:14] 2026-03-01 19:20:39,129 | INFO     | task id: 48838581
[2026-03-01 14:21:14] 2026-03-01 19:20:39,129 | INFO     | errors: (none)
[2026-03-01 14:21:14] 2026-03-01 19:20:39,129 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-01 14:21:14] 2026-03-01 19:20:39,129 | INFO     | pilot state: finished 
[2026-03-01 14:21:14] 2026-03-01 19:20:39,129 | INFO     | transexitcode: 0
[2026-03-01 14:21:14] 2026-03-01 19:20:39,130 | INFO     | exeerrorcode: 0
[2026-03-01 14:21:14] 2026-03-01 19:20:39,130 | INFO     | exeerrordiag: 
[2026-03-01 14:21:14] 2026-03-01 19:20:39,130 | INFO     | exitcode: 0
[2026-03-01 14:21:14] 2026-03-01 19:20:39,130 | INFO     | exitmsg: OK
[2026-03-01 14:21:14] 2026-03-01 19:20:39,130 | INFO     | cpuconsumptiontime: 52064 s
[2026-03-01 14:21:14] 2026-03-01 19:20:39,130 | INFO     | nevents: 400
[2026-03-01 14:21:14] 2026-03-01 19:20:39,130 | INFO     | neventsw: 0
[2026-03-01 14:21:14] 2026-03-01 19:20:39,130 | INFO     | pid: 1694705
[2026-03-01 14:21:14] 2026-03-01 19:20:39,130 | INFO     | pgrp: 1694705
[2026-03-01 14:21:14] 2026-03-01 19:20:39,130 | INFO     | corecount: 9
[2026-03-01 14:21:14] 2026-03-01 19:20:39,130 | INFO     | event service: False
[2026-03-01 14:21:14] 2026-03-01 19:20:39,130 | INFO     | sizes: {0: 2281210, 1: 2281895, 2: 2281923, 3: 2282384, 14: 2282384, 29886: 2320093, 29894: 2329147, 29898: 2329285}
[2026-03-01 14:21:14] 2026-03-01 19:20:39,131 | INFO     | --------------------------------------------------
[2026-03-01 14:21:14] 2026-03-01 19:20:39,131 | INFO     | 
[2026-03-01 14:21:14] 2026-03-01 19:20:39,131 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2026-03-01 14:21:14] 2026-03-01 19:20:39,203 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-01 14:21:14] 2026-03-01 19:20:39,203 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-01 14:21:14] 2026-03-01 19:20:39,203 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-01 14:21:14] 2026-03-01 19:20:39,203 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-01 14:21:14] 2026-03-01 19:20:39,203 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-01 14:21:14] 2026-03-01 19:20:39,204 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-01 14:21:14] 2026-03-01 19:20:39,204 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-01 14:21:14] 2026-03-01 19:20:39,204 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-01 14:21:14] 2026-03-01 19:20:39,204 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-01 14:21:14] 2026-03-01 19:20:39,204 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-01 14:21:14] 2026-03-01 19:20:39,204 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-01 14:21:14] 2026-03-01 19:20:39,204 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-01 14:21:14] 2026-03-01 19:20:39,204 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-01 14:21:14] 2026-03-01 19:20:39,204 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-01 14:21:14] 2026-03-01 19:20:39,204 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-01 14:21:14] 2026-03-01 19:20:39,205 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-01 14:21:14] 2026-03-01 19:20:39,205 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-01 14:21:14] 2026-03-01 19:20:39,205 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-01 14:21:14] 2026-03-01 19:20:39,205 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-01 14:21:14] 2026-03-01 19:20:39,205 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-01 14:21:14] 2026-03-01 19:20:39,205 | INFO     | job 7033996708 has completed (purged errors)
[2026-03-01 14:21:14] 2026-03-01 19:20:39,205 | INFO     | overall cleanup function is called
[2026-03-01 14:21:14] 2026-03-01 19:20:40,219 | INFO     | --- collectZombieJob: --- 10, [1694705]
[2026-03-01 14:21:14] 2026-03-01 19:20:40,220 | INFO     | zombie collector waiting for pid 1694705
[2026-03-01 14:21:14] 2026-03-01 19:20:40,220 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-01 14:21:14] 2026-03-01 19:20:40,220 | INFO     | collected zombie processes
[2026-03-01 14:21:14] 2026-03-01 19:20:40,220 | INFO     | will attempt to kill all subprocesses of pid=1694705
[2026-03-01 14:21:14] 2026-03-01 19:20:42,547 | INFO     | process IDs to be killed: [1694705] (in reverse order)
[2026-03-01 14:21:14] 2026-03-01 19:20:42,873 | WARNING  | found no corresponding commands to process id(s)
[2026-03-01 14:21:14] 2026-03-01 19:20:42,874 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-01 14:21:14] 2026-03-01 19:20:42,950 | INFO     | did not find any defunct processes belonging to 1694705
[2026-03-01 14:21:14] 2026-03-01 19:20:43,028 | INFO     | did not find any defunct processes belonging to 1694705
[2026-03-01 14:21:14] 2026-03-01 19:20:43,038 | INFO     | ready for new job
[2026-03-01 14:21:14] 2026-03-01 19:20:43,038 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-01 14:21:14] 2026-03-01 19:20:43,040 | INFO     | **************************************
[2026-03-01 14:21:14] 2026-03-01 19:20:43,041 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-01 14:21:14] 2026-03-01 19:20:43,041 | INFO     | **************************************
[2026-03-01 14:21:14] 2026-03-01 19:20:43,041 | INFO     | 
[2026-03-01 14:21:14] 2026-03-01 19:20:43,064 | INFO     | architecture information:
[2026-03-01 14:21:14] 2026-03-01 19:20:43,072 | INFO     | executing command: cat /etc/os-release
[2026-03-01 14:21:14] 2026-03-01 19:20:43,191 | INFO     | cat /etc/os-release:
[2026-03-01 14:21:14] NAME="CentOS Linux"
[2026-03-01 14:21:14] VERSION="7 (Core)"
[2026-03-01 14:21:14] ID="centos"
[2026-03-01 14:21:14] ID_LIKE="rhel fedora"
[2026-03-01 14:21:14] VERSION_ID="7"
[2026-03-01 14:21:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-01 14:21:14] ANSI_COLOR="0;31"
[2026-03-01 14:21:14] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-01 14:21:14] HOME_URL="https://www.centos.org/"
[2026-03-01 14:21:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-01 14:21:14] 
[2026-03-01 14:21:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-01 14:21:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-01 14:21:14] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-01 14:21:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-01 14:21:14] 
[2026-03-01 14:21:14] 2026-03-01 19:20:43,191 | INFO     | **************************************
[2026-03-01 14:21:14] 2026-03-01 19:20:43,695 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2026-03-01 14:21:14] 2026-03-01 19:20:43,854 | INFO     | sufficient remaining disk space (92325019648 B)
[2026-03-01 14:21:14] 2026-03-01 19:20:43,854 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-01 14:21:14] 2026-03-01 19:20:43,854 | INFO     | current server update state: UPDATING_FINAL
[2026-03-01 14:21:14] 2026-03-01 19:20:43,854 | INFO     | update_server=False
[2026-03-01 14:21:14] 2026-03-01 19:20:43,854 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-01 14:21:14] 2026-03-01 19:20:43,857 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-01 14:21:14] 2026-03-01 19:20:43,906 | INFO     | all data control threads have been joined
[2026-03-01 14:21:14] 2026-03-01 19:20:44,505 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-01 14:21:14] 2026-03-01 19:20:44,506 | INFO     | aborting loop
[2026-03-01 14:21:14] 2026-03-01 19:20:44,751 | INFO     | all job control threads have been joined
[2026-03-01 14:21:14] 2026-03-01 19:20:44,861 | INFO     | [job] retrieve thread has finished
[2026-03-01 14:21:14] 2026-03-01 19:20:44,863 | INFO     | [job] queue monitor thread has finished
[2026-03-01 14:21:14] 2026-03-01 19:20:44,917 | INFO     | [data] control thread has finished
[2026-03-01 14:21:14] 2026-03-01 19:20:44,952 | INFO     | [data] copytool_in thread has finished
[2026-03-01 14:21:14] 2026-03-01 19:20:44,961 | INFO     | all payload control threads have been joined
[2026-03-01 14:21:14] 2026-03-01 19:20:45,018 | INFO     | [job] validate thread has finished
[2026-03-01 14:21:14] 2026-03-01 19:20:45,019 | INFO     | [job] create_data_payload thread has finished
[2026-03-01 14:21:14] 2026-03-01 19:20:45,095 | INFO     | [payload] failed_post thread has finished
[2026-03-01 14:21:14] 2026-03-01 19:20:45,151 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-01 14:21:14] 2026-03-01 19:20:45,511 | INFO     | [job] job monitor thread has finished
[2026-03-01 14:21:14] 2026-03-01 19:20:45,654 | INFO     | [payload] validate_pre thread has finished
[2026-03-01 14:21:14] 2026-03-01 19:20:45,756 | INFO     | [job] control thread has finished
[2026-03-01 14:21:14] 2026-03-01 19:20:45,839 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-01 14:21:14] 2026-03-01 19:20:45,870 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-01 14:21:14] 2026-03-01 19:20:45,970 | INFO     | [payload] control thread has finished
[2026-03-01 14:21:14] 2026-03-01 19:20:46,020 | INFO     | [payload] execute_payloads thread has finished
[2026-03-01 14:21:14] 2026-03-01 19:20:46,280 | INFO     | [payload] validate_post thread has finished
[2026-03-01 14:21:14] 2026-03-01 19:20:47,158 | INFO     | [data] copytool_out thread has finished
[2026-03-01 14:21:14] 2026-03-01 19:20:49,848 | INFO     | [data] queue_monitor thread has finished
[2026-03-01 14:21:14] 2026-03-01 19:20:59,087 | INFO     | [monitor] cgroup control has ended
[2026-03-01 14:21:14] 2026-03-01 19:21:00,625 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140665730058048)>', '<ExcThread(monitor, started 140664851384064)>']
[2026-03-01 14:21:14] 2026-03-01 19:21:05,656 | INFO     | all workflow threads have been joined
[2026-03-01 14:21:14] 2026-03-01 19:21:05,657 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-01 14:21:14] 2026-03-01 19:21:05,657 | INFO     | traces error code: 0
[2026-03-01 14:21:14] 2026-03-01 19:21:05,657 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-01 14:21:14] 2026-03-01 19:21:12,538 | INFO     | PID=1674224 has CPU usage=7.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-01 14:21:14] 2026-03-01 19:21:12,538 | INFO     | .. there are 59 such processes running
[2026-03-01 14:21:14] 2026-03-01 19:21:12,539 | INFO     | found 0 job(s) in 20 queues
[2026-03-01 14:21:14] 2026-03-01 19:21:12,539 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-01 14:21:14] 2026-03-01 19:21:12,539 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-01 14:21:14] 2026-03-01 19:21:12,539 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-01 14:21:14] 2026-03-01 19:21:12,539 | INFO     | [monitor] control thread has ended
[2026-03-01 14:21:14] 2026-03-01 19:21:13,504 [wrapper] ==== pilot stdout END ====
[2026-03-01 14:21:14] 2026-03-01 19:21:13,523 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-01 14:21:14] 2026-03-01 19:21:13,546 [wrapper] pilotpid: 1674224
[2026-03-01 14:21:14] 2026-03-01 19:21:13,565 [wrapper] Pilot exit status: 0
[2026-03-01 14:21:14] 2026-03-01 19:21:13,645 [wrapper] pandaids: 7033996708 7033996708
[2026-03-01 14:21:14] 2026-03-01 19:21:13,775 [wrapper] cleanup supervisor_pilot 3128258 1674225
[2026-03-01 14:21:14] 2026-03-01 19:21:13,779 [wrapper] Test setup, not cleaning
[2026-03-01 14:21:14] 2026-03-01 19:21:13,795 [wrapper] apfmon messages muted
[2026-03-01 14:21:14] 2026-03-01 19:21:13,814 [wrapper] ==== wrapper stdout END ====
[2026-03-01 14:21:14] 2026-03-01 19:21:13,828 [wrapper] ==== wrapper stderr END ====
[2026-03-01 14:21:14]  *** Error codes and diagnostics ***
[2026-03-01 14:21:14]     "exeErrorCode": 0,
[2026-03-01 14:21:14]     "exeErrorDiag": "",
[2026-03-01 14:21:14]     "pilotErrorCode": 0,
[2026-03-01 14:21:14]     "pilotErrorDiag": "",
[2026-03-01 14:21:14]  *** Listing of results directory ***
[2026-03-01 14:21:14] total 789836
[2026-03-01 14:21:14] drwx------. 5 boincer umatlas      4096 Feb  2 10:00 pilot3
[2026-03-01 14:21:14] -rw-r--r--. 1 boincer umatlas    584627 Feb 28 17:55 pilot3.tar.gz
[2026-03-01 14:21:14] -rwx------. 1 boincer umatlas     36322 Feb 28 17:56 runpilot2-wrapper.sh
[2026-03-01 14:21:14] -rw-r--r--. 1 boincer umatlas      5111 Feb 28 17:58 queuedata.json
[2026-03-01 14:21:14] -rw-r--r--. 1 boincer umatlas       100 Mar  1 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-01 14:21:14] -rwxr-xr-x. 1 boincer umatlas      7986 Mar  1 00:04 run_atlas
[2026-03-01 14:21:14] -rw-r--r--. 1 boincer umatlas       105 Mar  1 00:04 job.xml
[2026-03-01 14:21:14] -rw-r--r--. 3 boincer umatlas 286497712 Mar  1 00:04 EVNT.48220205._000129.pool.root.1
[2026-03-01 14:21:14] -rw-r--r--. 3 boincer umatlas 286497712 Mar  1 00:04 ATLAS.root_0
[2026-03-01 14:21:14] -rw-r--r--. 2 boincer umatlas     15845 Mar  1 00:04 start_atlas.sh
[2026-03-01 14:21:14] drwxrwx--x. 2 boincer umatlas      4096 Mar  1 00:04 shared
[2026-03-01 14:21:14] -rw-r--r--. 2 boincer umatlas    597980 Mar  1 00:04 input.tar.gz
[2026-03-01 14:21:14] -rw-r--r--. 1 boincer umatlas         0 Mar  1 00:04 boinc_lockfile
[2026-03-01 14:21:14] -rw-r--r--. 1 boincer umatlas      2588 Mar  1 06:01 pandaJob.out
[2026-03-01 14:21:14] -rw-------. 1 boincer umatlas        57 Mar  1 06:01 setup.sh.local
[2026-03-01 14:21:14] -rw-------. 1 boincer umatlas    998198 Mar  1 06:02 agis_schedconf.cvmfs.json
[2026-03-01 14:21:14] -rw-------. 1 boincer umatlas       443 Mar  1 06:02 workernode_map.json
[2026-03-01 14:21:14] -rw-------. 1 boincer umatlas 223315603 Mar  1 14:16 HITS.48838581._002975.pool.root.1
[2026-03-01 14:21:14] -rw-r--r--. 1 boincer umatlas       532 Mar  1 14:17 boinc_task_state.xml
[2026-03-01 14:21:14] -rw-r--r--. 1 boincer umatlas      6880 Mar  1 14:19 init_data.xml
[2026-03-01 14:21:14] -rw-------. 1 boincer umatlas      1042 Mar  1 14:20 memory_monitor_summary.json
[2026-03-01 14:21:14] -rw-------. 1 boincer umatlas   1513015 Mar  1 14:20 agis_ddmendpoints.agis.ALL.json
[2026-03-01 14:21:14] -rw-------. 1 boincer umatlas    665339 Mar  1 14:20 log.48838581._002975.job.log.tgz.1
[2026-03-01 14:21:14] -rw-------. 1 boincer umatlas      6396 Mar  1 14:20 heartbeat.json
[2026-03-01 14:21:14] -rw-r--r--. 1 boincer umatlas        28 Mar  1 14:20 wrapper_checkpoint.txt
[2026-03-01 14:21:14] -rw-r--r--. 1 boincer umatlas      8192 Mar  1 14:20 boinc_mmap_file
[2026-03-01 14:21:14] -rw-------. 1 boincer umatlas        96 Mar  1 14:21 pilot_heartbeat.json
[2026-03-01 14:21:14] -rw-------. 1 boincer umatlas       823 Mar  1 14:21 pilotlog.txt
[2026-03-01 14:21:14] -rw-------. 1 boincer umatlas   3607937 Mar  1 14:21 log.48838581._002975.job.log.1
[2026-03-01 14:21:14] -rw-------. 1 boincer umatlas       357 Mar  1 14:21 output.list
[2026-03-01 14:21:14] -rw-r--r--. 1 boincer umatlas       620 Mar  1 14:21 runtime_log
[2026-03-01 14:21:14] -rw-------. 1 boincer umatlas   4290560 Mar  1 14:21 result.tar.gz
[2026-03-01 14:21:14] -rw-r--r--. 1 boincer umatlas      9437 Mar  1 14:21 runtime_log.err
[2026-03-01 14:21:14] -rw-------. 1 boincer umatlas       785 Mar  1 14:21 Di8LDm8PiG9n9Rq4apOajLDm4fhM0noT9bVooX4SDm7W6KDm27dv3m.diag
[2026-03-01 14:21:14] -rw-r--r--. 1 boincer umatlas     23431 Mar  1 14:21 stderr.txt
[2026-03-01 14:21:14] HITS file was successfully produced:
[2026-03-01 14:21:14] -rw-------. 1 boincer umatlas 223315603 Mar  1 14:16 shared/HITS.pool.root.1
[2026-03-01 14:21:14]  *** Contents of shared directory: ***
[2026-03-01 14:21:14] total 502668
[2026-03-01 14:21:14] -rw-r--r--. 3 boincer umatlas 286497712 Mar  1 00:04 ATLAS.root_0
[2026-03-01 14:21:14] -rw-r--r--. 2 boincer umatlas     15845 Mar  1 00:04 start_atlas.sh
[2026-03-01 14:21:14] -rw-r--r--. 2 boincer umatlas    597980 Mar  1 00:04 input.tar.gz
[2026-03-01 14:21:14] -rw-------. 1 boincer umatlas 223315603 Mar  1 14:16 HITS.pool.root.1
[2026-03-01 14:21:14] -rw-------. 1 boincer umatlas   4290560 Mar  1 14:21 result.tar.gz
14:21:15 (1655280): run_atlas exited; CPU time 53850.824899
14:21:15 (1655280): called boinc_finish(0)

</stderr_txt>
]]>

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