Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:11:16 (3175664): wrapper (7.7.26015): starting
23:11:16 (3175664): wrapper: running run_atlas (--nthreads 3)
[2026-03-01 23:11:16] Arguments: --nthreads 3
[2026-03-01 23:11:16] Threads: 3
[2026-03-01 23:11:16] Checking for CVMFS
[2026-03-01 23:11:16] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-01 23:11:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-01 23:11:17] Running cvmfs_config stat atlas.cern.ch
[2026-03-01 23:11:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-01 23:11:17] 2.9.2.0 2730021 3671 82100 156783 0 50 29798525 36864000 0 130560 0 1250446 99.981 133497 10438 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-01 23:11:17] CVMFS is ok
[2026-03-01 23:11:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-01 23:11:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-01 23:11:17] Further information can be found at the LHC@home message board.
[2026-03-01 23:11:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-01 23:11:17] Checking for apptainer binary...
[2026-03-01 23:11:17] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-01 23:11:17] Running /usr/bin/apptainer --version
[2026-03-01 23:11:17] apptainer version 1.4.1-1.1
[2026-03-01 23:11:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-01 23:11:17] thA349
[2026-03-01 23:11:17] apptainer works
[2026-03-01 23:11:17] Set ATHENA_PROC_NUMBER=3
[2026-03-01 23:11:17] Set ATHENA_CORE_NUMBER=3
[2026-03-01 23:11:17] Starting ATLAS job with PandaID=7034320542
[2026-03-01 23:11:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-02 01:09:42]  *** The last 200 lines of the pilot log: ***
[2026-03-02 01:09:42] 2026-03-02 00:09:10,345 | INFO     | job 7034320542 has completed (purged errors)
[2026-03-02 01:09:42] 2026-03-02 00:09:10,345 | INFO     | overall cleanup function is called
[2026-03-02 01:09:42] 2026-03-02 00:09:11,351 | INFO     | --- collectZombieJob: --- 10, [3184135]
[2026-03-02 01:09:42] 2026-03-02 00:09:11,352 | INFO     | zombie collector waiting for pid 3184135
[2026-03-02 01:09:42] 2026-03-02 00:09:11,352 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-02 01:09:42] 2026-03-02 00:09:11,352 | INFO     | collected zombie processes
[2026-03-02 01:09:42] 2026-03-02 00:09:11,352 | INFO     | will attempt to kill all subprocesses of pid=3184135
[2026-03-02 01:09:42] 2026-03-02 00:09:11,393 | INFO     | process IDs to be killed: [3184135] (in reverse order)
[2026-03-02 01:09:42] 2026-03-02 00:09:11,417 | WARNING  | found no corresponding commands to process id(s)
[2026-03-02 01:09:42] 2026-03-02 00:09:11,417 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-02 01:09:42] 2026-03-02 00:09:11,418 | INFO     | did not find any defunct processes belonging to 3184135
[2026-03-02 01:09:42] 2026-03-02 00:09:11,419 | INFO     | did not find any defunct processes belonging to 3184135
[2026-03-02 01:09:42] 2026-03-02 00:09:11,419 | INFO     | ready for new job
[2026-03-02 01:09:42] 2026-03-02 00:09:11,419 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-02 01:09:42] 2026-03-02 00:09:11,420 | INFO     | **************************************
[2026-03-02 01:09:42] 2026-03-02 00:09:11,420 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-02 01:09:42] 2026-03-02 00:09:11,420 | INFO     | **************************************
[2026-03-02 01:09:42] 2026-03-02 00:09:11,420 | INFO     | 
[2026-03-02 01:09:42] 2026-03-02 00:09:11,420 | INFO     | architecture information:
[2026-03-02 01:09:42] 2026-03-02 00:09:11,421 | INFO     | executing command: cat /etc/os-release
[2026-03-02 01:09:42] 2026-03-02 00:09:11,429 | INFO     | cat /etc/os-release:
[2026-03-02 01:09:42] NAME="CentOS Linux"
[2026-03-02 01:09:42] VERSION="7 (Core)"
[2026-03-02 01:09:42] ID="centos"
[2026-03-02 01:09:42] ID_LIKE="rhel fedora"
[2026-03-02 01:09:42] VERSION_ID="7"
[2026-03-02 01:09:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-02 01:09:42] ANSI_COLOR="0;31"
[2026-03-02 01:09:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-02 01:09:42] HOME_URL="https://www.centos.org/"
[2026-03-02 01:09:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-02 01:09:42] 
[2026-03-02 01:09:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-02 01:09:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-02 01:09:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-02 01:09:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-02 01:09:42] 
[2026-03-02 01:09:42] 2026-03-02 00:09:11,429 | INFO     | **************************************
[2026-03-02 01:09:42] 2026-03-02 00:09:11,933 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-02 01:09:42] 2026-03-02 00:09:11,945 | INFO     | sufficient remaining disk space (274245615616 B)
[2026-03-02 01:09:42] 2026-03-02 00:09:11,945 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-02 01:09:42] 2026-03-02 00:09:11,946 | INFO     | current server update state: UPDATING_FINAL
[2026-03-02 01:09:42] 2026-03-02 00:09:11,946 | INFO     | update_server=False
[2026-03-02 01:09:42] 2026-03-02 00:09:11,946 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-02 01:09:42] 2026-03-02 00:09:11,960 | INFO     | all job control threads have been joined
[2026-03-02 01:09:42] 2026-03-02 00:09:12,062 | INFO     | all payload control threads have been joined
[2026-03-02 01:09:42] 2026-03-02 00:09:12,457 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-02 01:09:42] 2026-03-02 00:09:12,457 | INFO     | aborting loop
[2026-03-02 01:09:42] 2026-03-02 00:09:12,913 | INFO     | all data control threads have been joined
[2026-03-02 01:09:42] 2026-03-02 00:09:12,951 | INFO     | [job] retrieve thread has finished
[2026-03-02 01:09:42] 2026-03-02 00:09:12,965 | INFO     | [job] control thread has finished
[2026-03-02 01:09:42] 2026-03-02 00:09:13,023 | INFO     | [payload] validate_post thread has finished
[2026-03-02 01:09:42] 2026-03-02 00:09:13,064 | INFO     | [data] copytool_in thread has finished
[2026-03-02 01:09:42] 2026-03-02 00:09:13,068 | INFO     | [payload] control thread has finished
[2026-03-02 01:09:42] 2026-03-02 00:09:13,413 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-02 01:09:42] 2026-03-02 00:09:13,451 | INFO     | [payload] failed_post thread has finished
[2026-03-02 01:09:42] 2026-03-02 00:09:13,462 | INFO     | [job] job monitor thread has finished
[2026-03-02 01:09:42] 2026-03-02 00:09:13,919 | INFO     | [data] control thread has finished
[2026-03-02 01:09:42] 2026-03-02 00:09:14,190 | INFO     | [payload] execute_payloads thread has finished
[2026-03-02 01:09:42] 2026-03-02 00:09:14,265 | INFO     | [job] create_data_payload thread has finished
[2026-03-02 01:09:42] 2026-03-02 00:09:14,346 | INFO     | [job] validate thread has finished
[2026-03-02 01:09:42] 2026-03-02 00:09:14,358 | INFO     | [payload] validate_pre thread has finished
[2026-03-02 01:09:42] 2026-03-02 00:09:14,839 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-02 01:09:42] 2026-03-02 00:09:15,054 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-02 01:09:42] 2026-03-02 00:09:15,419 | INFO     | [data] copytool_out thread has finished
[2026-03-02 01:09:42] 2026-03-02 00:09:15,845 | INFO     | [job] queue monitor thread has finished
[2026-03-02 01:09:42] 2026-03-02 00:09:19,061 | INFO     | [data] queue_monitor thread has finished
[2026-03-02 01:09:42] 2026-03-02 00:09:22,470 | INFO     | job.realtimelogging is not enabled
[2026-03-02 01:09:42] 2026-03-02 00:09:23,476 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-02 01:09:42] 2026-03-02 00:09:35,743 | INFO     | [monitor] cgroup control has ended
[2026-03-02 01:09:42] 2026-03-02 00:09:36,118 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140301122570048)>', '<ExcThread(monitor, started 140300307642112)>']
[2026-03-02 01:09:42] 2026-03-02 00:09:41,135 | INFO     | all workflow threads have been joined
[2026-03-02 01:09:42] 2026-03-02 00:09:41,136 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-02 01:09:42] 2026-03-02 00:09:41,136 | INFO     | traces error code: 0
[2026-03-02 01:09:42] 2026-03-02 00:09:41,136 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-02 01:09:42] 2026-03-02 00:09:42,001 | INFO     | PID=3179711 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-02 01:09:42] 2026-03-02 00:09:42,001 | INFO     | found 0 job(s) in 20 queues
[2026-03-02 01:09:42] 2026-03-02 00:09:42,001 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-02 01:09:42] 2026-03-02 00:09:42,001 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-02 01:09:42] 2026-03-02 00:09:42,001 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-02 01:09:42] 2026-03-02 00:09:42,001 | INFO     | [monitor] control thread has ended
[2026-03-02 01:09:42] 2026-03-02 00:09:42,046 [wrapper] ==== pilot stdout END ====
[2026-03-02 01:09:42] 2026-03-02 00:09:42,049 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-02 01:09:42] 2026-03-02 00:09:42,051 [wrapper] pilotpid: 3179711
[2026-03-02 01:09:42] 2026-03-02 00:09:42,053 [wrapper] Pilot exit status: 0
[2026-03-02 01:09:42] 2026-03-02 00:09:42,060 [wrapper] pandaids: 7034320542
[2026-03-02 01:09:42] 2026-03-02 00:09:42,075 [wrapper] cleanup supervisor_pilot 3190695 3179712
[2026-03-02 01:09:42] 2026-03-02 00:09:42,077 [wrapper] Test setup, not cleaning
[2026-03-02 01:09:42] 2026-03-02 00:09:42,080 [wrapper] apfmon messages muted
[2026-03-02 01:09:42] 2026-03-02 00:09:42,082 [wrapper] ==== wrapper stdout END ====
[2026-03-02 01:09:42] 2026-03-02 00:09:42,084 [wrapper] ==== wrapper stderr END ====
[2026-03-02 01:09:42]  *** Error codes and diagnostics ***
[2026-03-02 01:09:42]     "exeErrorCode": 0,
[2026-03-02 01:09:42]     "exeErrorDiag": "",
[2026-03-02 01:09:42]     "pilotErrorCode": 0,
[2026-03-02 01:09:42]     "pilotErrorDiag": "",
[2026-03-02 01:09:42]  *** Listing of results directory ***
[2026-03-02 01:09:42] total 579444
[2026-03-02 01:09:42] -rw-r--r-- 1 boinc boinc    584627 Mar  1 05:23 pilot3.tar.gz
[2026-03-02 01:09:42] -rwx------ 1 boinc boinc     36322 Mar  1 05:23 runpilot2-wrapper.sh
[2026-03-02 01:09:42] -rw-r--r-- 1 boinc boinc      5111 Mar  1 05:24 queuedata.json
[2026-03-02 01:09:42] -rw-r--r-- 1 boinc boinc       100 Mar  1 23:11 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-02 01:09:42] -rwxr-xr-x 1 boinc boinc      7986 Mar  1 23:11 run_atlas
[2026-03-02 01:09:42] -rw-r--r-- 1 boinc boinc       105 Mar  1 23:11 job.xml
[2026-03-02 01:09:42] -rw-r--r-- 2 boinc boinc 314052964 Mar  1 23:11 EVNT.48252743._000039.pool.root.1
[2026-03-02 01:09:42] -rw-r--r-- 2 boinc boinc    597949 Mar  1 23:11 input.tar.gz
[2026-03-02 01:09:42] -rw-r--r-- 2 boinc boinc     15845 Mar  1 23:11 start_atlas.sh
[2026-03-02 01:09:42] drwxrwx--x 2 boinc boinc      4096 Mar  1 23:11 shared
[2026-03-02 01:09:42] -rw-r--r-- 1 boinc boinc         0 Mar  1 23:11 boinc_setup_complete
[2026-03-02 01:09:42] -rw-r--r-- 1 boinc boinc      6445 Mar  1 23:11 init_data.xml
[2026-03-02 01:09:42] -rw-r--r-- 1 boinc boinc         0 Mar  1 23:11 boinc_lockfile
[2026-03-02 01:09:42] -rw-r--r-- 1 boinc boinc      2490 Mar  1 23:11 pandaJob.out
[2026-03-02 01:09:42] -rw------- 1 boinc boinc    998184 Mar  1 23:11 agis_schedconf.cvmfs.json
[2026-03-02 01:09:42] -rw------- 1 boinc boinc   1513015 Mar  1 23:11 agis_ddmendpoints.agis.ALL.json
[2026-03-02 01:09:42] -rw------- 1 boinc boinc       422 Mar  1 23:11 workernode_map.json
[2026-03-02 01:09:42] drwx------ 5 boinc boinc      4096 Mar  1 23:11 pilot3
[2026-03-02 01:09:42] -rw------- 1 boinc boinc 272779094 Mar  2 01:08 HITS.48841995._000987.pool.root.1
[2026-03-02 01:09:42] -rw-r--r-- 1 boinc boinc       530 Mar  2 01:08 boinc_task_state.xml
[2026-03-02 01:09:42] -rw------- 1 boinc boinc        95 Mar  2 01:08 pilot_heartbeat.json
[2026-03-02 01:09:42] -rw------- 1 boinc boinc      1014 Mar  2 01:09 memory_monitor_summary.json
[2026-03-02 01:09:42] -rw------- 1 boinc boinc    283299 Mar  2 01:09 log.48841995._000987.job.log.tgz.1
[2026-03-02 01:09:42] -rw------- 1 boinc boinc      6284 Mar  2 01:09 heartbeat.json
[2026-03-02 01:09:42] -rw-r--r-- 1 boinc boinc      8192 Mar  2 01:09 boinc_mmap_file
[2026-03-02 01:09:42] -rw-r--r-- 1 boinc boinc        27 Mar  2 01:09 wrapper_checkpoint.txt
[2026-03-02 01:09:42] -rw------- 1 boinc boinc       747 Mar  2 01:09 pilotlog.txt
[2026-03-02 01:09:42] -rw------- 1 boinc boinc   1015622 Mar  2 01:09 log.48841995._000987.job.log.1
[2026-03-02 01:09:42] -rw------- 1 boinc boinc       357 Mar  2 01:09 output.list
[2026-03-02 01:09:42] -rw-r--r-- 1 boinc boinc       620 Mar  2 01:09 runtime_log
[2026-03-02 01:09:42] -rw------- 1 boinc boinc   1320960 Mar  2 01:09 result.tar.gz
[2026-03-02 01:09:42] -rw-r--r-- 1 boinc boinc      8896 Mar  2 01:09 runtime_log.err
[2026-03-02 01:09:42] -rw------- 1 boinc boinc       657 Mar  2 01:09 KCcNDmdWnG9n9Rq4apOajLDm4fhM0noT9bVooX4SDms66KDmemD03n.diag
[2026-03-02 01:09:42] -rw-r--r-- 1 boinc boinc     10903 Mar  2 01:09 stderr.txt
[2026-03-02 01:09:42] HITS file was successfully produced:
[2026-03-02 01:09:42] -rw------- 1 boinc boinc 272779094 Mar  2 01:08 shared/HITS.pool.root.1
[2026-03-02 01:09:42]  *** Contents of shared directory: ***
[2026-03-02 01:09:42] total 574984
[2026-03-02 01:09:42] -rw-r--r-- 2 boinc boinc 314052964 Mar  1 23:11 ATLAS.root_0
[2026-03-02 01:09:42] -rw-r--r-- 2 boinc boinc    597949 Mar  1 23:11 input.tar.gz
[2026-03-02 01:09:42] -rw-r--r-- 2 boinc boinc     15845 Mar  1 23:11 start_atlas.sh
[2026-03-02 01:09:42] -rw------- 1 boinc boinc 272779094 Mar  2 01:08 HITS.pool.root.1
[2026-03-02 01:09:42] -rw------- 1 boinc boinc   1320960 Mar  2 01:09 result.tar.gz
01:09:44 (3175664): run_atlas exited; CPU time 20414.313993
01:09:44 (3175664): called boinc_finish(0)

</stderr_txt>
]]>

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