Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
08:28:23 (2391125): wrapper (7.7.26015): starting
08:28:23 (2391125): wrapper: running run_atlas (--nthreads 12)
[2026-03-01 08:28:23] Arguments: --nthreads 12
[2026-03-01 08:28:23] Threads: 12
[2026-03-01 08:28:23] Checking for CVMFS
[2026-03-01 08:28:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-01 08:28:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-01 08:28:25] Running cvmfs_config stat atlas.cern.ch
[2026-03-01 08:28:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-01 08:28:25] 2.12.7.0 991347 5759 68564 156771 3 126 4041403 4194305 2233 130560 0 12695322 99.996 215748 2142 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.150.1:3128 1
[2026-03-01 08:28:25] CVMFS is ok
[2026-03-01 08:28:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-01 08:28:25] Checking for apptainer binary...
[2026-03-01 08:28:25] apptainer is not installed, using version from CVMFS
[2026-03-01 08:28:25] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-01 08:28:25] Trebeth
[2026-03-01 08:28:25] apptainer works
[2026-03-01 08:28:25] Set ATHENA_PROC_NUMBER=12
[2026-03-01 08:28:25] Set ATHENA_CORE_NUMBER=12
[2026-03-01 08:28:25] Starting ATLAS job with PandaID=7033996570
[2026-03-01 08:28:25] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-01 09:35:50]  *** The last 200 lines of the pilot log: ***
[2026-03-01 09:35:50]  filesize=388100
[2026-03-01 09:35:50]  filetype=log
[2026-03-01 09:35:50]  guid=adee1852-72c1-4d8d-874a-098d7ae6c296
[2026-03-01 09:35:50]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-01 09:35:50]  is_altstaged=None
[2026-03-01 09:35:50]  is_tar=False
[2026-03-01 09:35:50]  lfn=log.48838581._002906.job.log.tgz.1
[2026-03-01 09:35:50]  mtime=0
[2026-03-01 09:35:50]  protocol_id=None
[2026-03-01 09:35:50]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-01 09:35:50]  replicas=None
[2026-03-01 09:35:50]  scope=mc23_13p6TeV
[2026-03-01 09:35:50]  status=None
[2026-03-01 09:35:50]  status_code=0
[2026-03-01 09:35:50]  storage_token=
[2026-03-01 09:35:50]  surl=/var/lib/boinc-client/slots/1/PanDA_Pilot-7033996570/log.48838581._002906.job.log.tgz.1
[2026-03-01 09:35:50]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ff/c5/log.48838581._002906.job.log.tgz.1
[2026-03-01 09:35:50]  workdir=None
[2026-03-01 09:35:50] ]
[2026-03-01 09:35:50] 2026-03-01 14:34:58,256 | INFO     | transferring file log.48838581._002906.job.log.tgz.1 from /var/lib/boinc-client/slots/1/PanDA_Pilot-7033996570/log.48838581._002906.job.log.tgz.1 to /var/lib/boinc
[2026-03-01 09:35:50] 2026-03-01 14:34:58,256 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/1/PanDA_Pilot-7033996570/log.48838581._002906.job.log.tgz.1 /var/lib/boinc-client/slots/1/log.488385
[2026-03-01 09:35:50] 2026-03-01 14:34:58,270 | INFO     | adding to output.list: log.48838581._002906.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ff/c5/log.48838581._002906.job.log.tg
[2026-03-01 09:35:50] 2026-03-01 14:34:58,271 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-01 09:35:50] 2026-03-01 14:34:58,271 | INFO     | summary of transferred files:
[2026-03-01 09:35:50] 2026-03-01 14:34:58,271 | INFO     |  -- lfn=log.48838581._002906.job.log.tgz.1, status_code=0, status=transferred
[2026-03-01 09:35:50] 2026-03-01 14:34:58,271 | INFO     | stage-out finished correctly
[2026-03-01 09:35:50] 2026-03-01 14:34:59,280 | INFO     | time since job start (3980s) is within the limit (349056.0s)
[2026-03-01 09:35:50] 2026-03-01 14:34:59,980 | INFO     | monitor loop #302: job 0:7033996570 is in state 'finished'
[2026-03-01 09:35:50] 2026-03-01 14:34:59,981 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-01 09:35:50] 2026-03-01 14:35:01,283 | INFO     | time since job start (3982s) is within the limit (349056.0s)
[2026-03-01 09:35:50] 2026-03-01 14:35:01,680 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-01 09:35:50] 2026-03-01 14:35:02,427 | INFO     | job 7033996570 has state=finished
[2026-03-01 09:35:50] 2026-03-01 14:35:02,427 | INFO     | preparing for final server update for job 7033996570 in state='finished'
[2026-03-01 09:35:50] 2026-03-01 14:35:02,427 | INFO     | reading metadata from: /var/lib/boinc-client/slots/1/PanDA_Pilot-7033996570/jobReport.json
[2026-03-01 09:35:50] 2026-03-01 14:35:02,430 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/1/workernode_map.json
[2026-03-01 09:35:50] 2026-03-01 14:35:02,431 | INFO     | this job has now completed (state=finished)
[2026-03-01 09:35:50] 2026-03-01 14:35:02,431 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-01 09:35:50] 2026-03-01 14:35:02,431 | INFO     | log transfer has been attempted: DONE
[2026-03-01 09:35:50] 2026-03-01 14:35:02,431 | INFO     | job 7033996570 has finished - writing final server update
[2026-03-01 09:35:50] 2026-03-01 14:35:02,431 | INFO     | total number of processed events: 400 (read)
[2026-03-01 09:35:50] 2026-03-01 14:35:02,460 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-7033996570/memory_monitor_summary.json (trf name=prmon)
[2026-03-01 09:35:50] 2026-03-01 14:35:02,460 | INFO     | extracted standard info from prmon json
[2026-03-01 09:35:50] 2026-03-01 14:35:02,460 | INFO     | extracted standard memory fields from prmon json
[2026-03-01 09:35:50] 2026-03-01 14:35:02,461 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-01 09:35:50] 2026-03-01 14:35:02,461 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-01 09:35:50] 2026-03-01 14:35:02,461 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-01 09:35:50] 2026-03-01 14:35:02,463 | INFO     | fitting pss+swap vs Time
[2026-03-01 09:35:50] 2026-03-01 14:35:02,463 | INFO     | sum of square deviations: 60482994.5
[2026-03-01 09:35:50] 2026-03-01 14:35:02,463 | INFO     | sum of deviations: 33888214.500000566
[2026-03-01 09:35:50] 2026-03-01 14:35:02,464 | INFO     | mean x: 1772373781.5
[2026-03-01 09:35:50] 2026-03-01 14:35:02,464 | INFO     | mean y: 2809782.4310344825
[2026-03-01 09:35:50] 2026-03-01 14:35:02,464 | INFO     | intersect: -990239311.420447
[2026-03-01 09:35:50] 2026-03-01 14:35:02,464 | INFO     | chi2: 0.15802659370158414
[2026-03-01 09:35:50] 2026-03-01 14:35:02,464 | INFO     | current memory leak: 0.56 B/s (using 58 data points, chi2=0.16)
[2026-03-01 09:35:50] 2026-03-01 14:35:02,465 | INFO     | could have reported an average CPU frequency of 2113 MHz (6 samples)
[2026-03-01 09:35:50] 2026-03-01 14:35:02,465 | INFO     | ..............................
[2026-03-01 09:35:50] 2026-03-01 14:35:02,465 | INFO     | . Timing measurements:
[2026-03-01 09:35:50] 2026-03-01 14:35:02,465 | INFO     | . get job = 0 s
[2026-03-01 09:35:50] 2026-03-01 14:35:02,465 | INFO     | . initial setup = 5 s
[2026-03-01 09:35:50] 2026-03-01 14:35:02,465 | INFO     | . payload setup = 4 s
[2026-03-01 09:35:50] 2026-03-01 14:35:02,465 | INFO     | . stage-in = 0 s
[2026-03-01 09:35:50] 2026-03-01 14:35:02,465 | INFO     | . payload execution = 3958 s
[2026-03-01 09:35:50] 2026-03-01 14:35:02,465 | INFO     | . stage-out = 0 s
[2026-03-01 09:35:50] 2026-03-01 14:35:02,466 | INFO     | . log creation = 0 s
[2026-03-01 09:35:50] 2026-03-01 14:35:02,466 | INFO     | ..............................
[2026-03-01 09:35:50] 2026-03-01 14:35:02,554 | INFO     | 
[2026-03-01 09:35:50] 2026-03-01 14:35:02,554 | INFO     | job summary report
[2026-03-01 09:35:50] 2026-03-01 14:35:02,554 | INFO     | --------------------------------------------------
[2026-03-01 09:35:50] 2026-03-01 14:35:02,555 | INFO     | PanDA job id: 7033996570
[2026-03-01 09:35:50] 2026-03-01 14:35:02,555 | INFO     | task id: 48838581
[2026-03-01 09:35:50] 2026-03-01 14:35:02,555 | INFO     | errors: (none)
[2026-03-01 09:35:50] 2026-03-01 14:35:02,555 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-01 09:35:50] 2026-03-01 14:35:02,555 | INFO     | pilot state: finished 
[2026-03-01 09:35:50] 2026-03-01 14:35:02,555 | INFO     | transexitcode: 0
[2026-03-01 09:35:50] 2026-03-01 14:35:02,555 | INFO     | exeerrorcode: 0
[2026-03-01 09:35:50] 2026-03-01 14:35:02,555 | INFO     | exeerrordiag: 
[2026-03-01 09:35:50] 2026-03-01 14:35:02,555 | INFO     | exitcode: 0
[2026-03-01 09:35:50] 2026-03-01 14:35:02,555 | INFO     | exitmsg: OK
[2026-03-01 09:35:50] 2026-03-01 14:35:02,556 | INFO     | cpuconsumptiontime: 41813 s
[2026-03-01 09:35:50] 2026-03-01 14:35:02,556 | INFO     | nevents: 400
[2026-03-01 09:35:50] 2026-03-01 14:35:02,556 | INFO     | neventsw: 0
[2026-03-01 09:35:50] 2026-03-01 14:35:02,556 | INFO     | pid: 2400309
[2026-03-01 09:35:50] 2026-03-01 14:35:02,556 | INFO     | pgrp: 2400309
[2026-03-01 09:35:50] 2026-03-01 14:35:02,556 | INFO     | corecount: 12
[2026-03-01 09:35:50] 2026-03-01 14:35:02,556 | INFO     | event service: False
[2026-03-01 09:35:50] 2026-03-01 14:35:02,556 | INFO     | sizes: {0: 2281874, 1: 2282335, 11: 2282335, 3967: 2308227, 3968: 2317239, 3972: 2317617}
[2026-03-01 09:35:50] 2026-03-01 14:35:02,556 | INFO     | --------------------------------------------------
[2026-03-01 09:35:50] 2026-03-01 14:35:02,556 | INFO     | 
[2026-03-01 09:35:50] 2026-03-01 14:35:02,557 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2026-03-01 09:35:50] 2026-03-01 14:35:02,576 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-01 09:35:50] 2026-03-01 14:35:02,576 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-01 09:35:50] 2026-03-01 14:35:02,576 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-01 09:35:50] 2026-03-01 14:35:02,577 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-01 09:35:50] 2026-03-01 14:35:02,577 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-01 09:35:50] 2026-03-01 14:35:02,577 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-01 09:35:50] 2026-03-01 14:35:02,577 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-01 09:35:50] 2026-03-01 14:35:02,577 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-01 09:35:50] 2026-03-01 14:35:02,577 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-01 09:35:50] 2026-03-01 14:35:02,577 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-01 09:35:50] 2026-03-01 14:35:02,577 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-01 09:35:50] 2026-03-01 14:35:02,577 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-01 09:35:50] 2026-03-01 14:35:02,577 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-01 09:35:50] 2026-03-01 14:35:02,578 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-01 09:35:50] 2026-03-01 14:35:02,578 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-01 09:35:50] 2026-03-01 14:35:02,578 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-01 09:35:50] 2026-03-01 14:35:02,578 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-01 09:35:50] 2026-03-01 14:35:02,578 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-01 09:35:50] 2026-03-01 14:35:02,578 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-01 09:35:50] 2026-03-01 14:35:02,578 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-01 09:35:50] 2026-03-01 14:35:02,578 | INFO     | job 7033996570 has completed (purged errors)
[2026-03-01 09:35:50] 2026-03-01 14:35:02,579 | INFO     | overall cleanup function is called
[2026-03-01 09:35:50] 2026-03-01 14:35:03,587 | INFO     | --- collectZombieJob: --- 10, [2400309]
[2026-03-01 09:35:50] 2026-03-01 14:35:03,587 | INFO     | zombie collector waiting for pid 2400309
[2026-03-01 09:35:50] 2026-03-01 14:35:03,588 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-01 09:35:50] 2026-03-01 14:35:03,588 | INFO     | collected zombie processes
[2026-03-01 09:35:50] 2026-03-01 14:35:03,588 | INFO     | will attempt to kill all subprocesses of pid=2400309
[2026-03-01 09:35:50] 2026-03-01 14:35:03,811 | INFO     | process IDs to be killed: [2400309] (in reverse order)
[2026-03-01 09:35:50] 2026-03-01 14:35:03,877 | WARNING  | found no corresponding commands to process id(s)
[2026-03-01 09:35:50] 2026-03-01 14:35:03,878 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-01 09:35:50] 2026-03-01 14:35:03,884 | INFO     | did not find any defunct processes belonging to 2400309
[2026-03-01 09:35:50] 2026-03-01 14:35:03,888 | INFO     | did not find any defunct processes belonging to 2400309
[2026-03-01 09:35:50] 2026-03-01 14:35:03,888 | INFO     | ready for new job
[2026-03-01 09:35:50] 2026-03-01 14:35:03,889 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-01 09:35:50] 2026-03-01 14:35:03,891 | INFO     | **************************************
[2026-03-01 09:35:50] 2026-03-01 14:35:03,891 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-01 09:35:50] 2026-03-01 14:35:03,891 | INFO     | **************************************
[2026-03-01 09:35:50] 2026-03-01 14:35:03,891 | INFO     | 
[2026-03-01 09:35:50] 2026-03-01 14:35:03,913 | INFO     | architecture information:
[2026-03-01 09:35:50] 2026-03-01 14:35:03,914 | INFO     | executing command: cat /etc/os-release
[2026-03-01 09:35:50] 2026-03-01 14:35:03,925 | INFO     | cat /etc/os-release:
[2026-03-01 09:35:50] NAME="CentOS Linux"
[2026-03-01 09:35:50] VERSION="7 (Core)"
[2026-03-01 09:35:50] ID="centos"
[2026-03-01 09:35:50] ID_LIKE="rhel fedora"
[2026-03-01 09:35:50] VERSION_ID="7"
[2026-03-01 09:35:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-01 09:35:50] ANSI_COLOR="0;31"
[2026-03-01 09:35:50] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-01 09:35:50] HOME_URL="https://www.centos.org/"
[2026-03-01 09:35:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-01 09:35:50] 
[2026-03-01 09:35:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-01 09:35:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-01 09:35:50] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-01 09:35:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-01 09:35:50] 
[2026-03-01 09:35:50] 2026-03-01 14:35:03,925 | INFO     | **************************************
[2026-03-01 09:35:50] 2026-03-01 14:35:04,428 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2026-03-01 09:35:50] 2026-03-01 14:35:04,442 | INFO     | sufficient remaining disk space (399774842880 B)
[2026-03-01 09:35:50] 2026-03-01 14:35:04,442 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-01 09:35:50] 2026-03-01 14:35:04,442 | INFO     | current server update state: UPDATING_FINAL
[2026-03-01 09:35:50] 2026-03-01 14:35:04,442 | INFO     | update_server=False
[2026-03-01 09:35:50] 2026-03-01 14:35:04,442 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-01 09:35:50] 2026-03-01 14:35:04,443 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-01 09:35:50] 2026-03-01 14:35:04,443 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-01 09:35:50] 2026-03-01 14:35:04,443 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-01 09:35:50] 2026-03-01 14:35:04,443 | INFO     | aborting loop
[2026-03-01 09:35:50] 2026-03-01 14:35:04,470 | INFO     | all data control threads have been joined
[2026-03-01 09:35:50] 2026-03-01 14:35:05,448 | INFO     | [job] retrieve thread has finished
[2026-03-01 09:35:50] 2026-03-01 14:35:05,449 | INFO     | [job] queue monitor thread has finished
[2026-03-01 09:35:50] 2026-03-01 14:35:05,449 | INFO     | [job] job monitor thread has finished
[2026-03-01 09:35:50] 2026-03-01 14:35:05,474 | INFO     | [data] control thread has finished
[2026-03-01 09:35:50] 2026-03-01 14:35:05,574 | INFO     | all payload control threads have been joined
[2026-03-01 09:35:50] 2026-03-01 14:35:05,859 | INFO     | [payload] failed_post thread has finished
[2026-03-01 09:35:50] 2026-03-01 14:35:06,073 | INFO     | all job control threads have been joined
[2026-03-01 09:35:50] 2026-03-01 14:35:06,096 | INFO     | [job] validate thread has finished
[2026-03-01 09:35:50] 2026-03-01 14:35:06,364 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-01 09:35:50] 2026-03-01 14:35:06,374 | INFO     | [job] create_data_payload thread has finished
[2026-03-01 09:35:50] 2026-03-01 14:35:06,447 | INFO     | [data] copytool_out thread has finished
[2026-03-01 09:35:50] 2026-03-01 14:35:06,498 | INFO     | [payload] validate_post thread has finished
[2026-03-01 09:35:50] 2026-03-01 14:35:06,579 | INFO     | [payload] control thread has finished
[2026-03-01 09:35:50] 2026-03-01 14:35:06,775 | INFO     | [data] copytool_in thread has finished
[2026-03-01 09:35:50] 2026-03-01 14:35:06,778 | INFO     | [payload] validate_pre thread has finished
[2026-03-01 09:35:50] 2026-03-01 14:35:06,844 | INFO     | [payload] execute_payloads thread has finished
[2026-03-01 09:35:50] 2026-03-01 14:35:07,078 | INFO     | [job] control thread has finished
[2026-03-01 09:35:50] 2026-03-01 14:35:07,770 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-01 09:35:50] 2026-03-01 14:35:11,774 | INFO     | [data] queue_monitor thread has finished
[2026-03-01 09:35:50] 2026-03-01 14:35:34,653 | INFO     | PID=2395484 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-01 09:35:50] 2026-03-01 14:35:34,653 | INFO     | .. there are 4 such processes running
[2026-03-01 09:35:50] 2026-03-01 14:35:34,654 | INFO     | found 0 job(s) in 20 queues
[2026-03-01 09:35:50] 2026-03-01 14:35:34,654 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-01 09:35:50] 2026-03-01 14:35:34,655 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-01 09:35:50] 2026-03-01 14:35:44,977 | INFO     | [monitor] cgroup control has ended
[2026-03-01 09:35:50] 2026-03-01 14:35:45,361 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140419643324224)>', '<ExcThread(monitor, started 140418989684480)>']
[2026-03-01 09:35:50] 2026-03-01 14:35:45,710 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-01 09:35:50] 2026-03-01 14:35:45,711 | INFO     | [monitor] control thread has ended
[2026-03-01 09:35:50] 2026-03-01 14:35:50,382 | INFO     | all workflow threads have been joined
[2026-03-01 09:35:50] 2026-03-01 14:35:50,383 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-01 09:35:50] 2026-03-01 14:35:50,384 | INFO     | traces error code: 0
[2026-03-01 09:35:50] 2026-03-01 14:35:50,384 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-01 09:35:50] 2026-03-01 14:35:50,481 [wrapper] ==== pilot stdout END ====
[2026-03-01 09:35:50] 2026-03-01 14:35:50,483 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-01 09:35:50] 2026-03-01 14:35:50,484 [wrapper] pilotpid: 2395484
[2026-03-01 09:35:50] 2026-03-01 14:35:50,485 [wrapper] Pilot exit status: 0
[2026-03-01 09:35:50] 2026-03-01 14:35:50,493 [wrapper] pandaids: 7033996570
[2026-03-01 09:35:50] 2026-03-01 14:35:50,533 [wrapper] cleanup supervisor_pilot 2471197 2395485
[2026-03-01 09:35:50] 2026-03-01 14:35:50,535 [wrapper] Test setup, not cleaning
[2026-03-01 09:35:50] 2026-03-01 14:35:50,537 [wrapper] apfmon messages muted
[2026-03-01 09:35:50] 2026-03-01 14:35:50,539 [wrapper] ==== wrapper stdout END ====
[2026-03-01 09:35:50] 2026-03-01 14:35:50,540 [wrapper] ==== wrapper stderr END ====
[2026-03-01 09:35:50]  *** Error codes and diagnostics ***
[2026-03-01 09:35:50]     "exeErrorCode": 0,
[2026-03-01 09:35:50]     "exeErrorDiag": "",
[2026-03-01 09:35:50]     "pilotErrorCode": 0,
[2026-03-01 09:35:50]     "pilotErrorDiag": "",
[2026-03-01 09:35:50]  *** Listing of results directory ***
[2026-03-01 09:35:50] total 509324
[2026-03-01 09:35:50] -rw-r--r-- 1 boinc boinc    584627 Feb 28 17:55 pilot3.tar.gz
[2026-03-01 09:35:50] -rwx------ 1 boinc boinc     36322 Feb 28 17:58 runpilot2-wrapper.sh
[2026-03-01 09:35:50] -rw-r--r-- 1 boinc boinc      5111 Feb 28 18:01 queuedata.json
[2026-03-01 09:35:50] -rw-r--r-- 1 boinc boinc       100 Mar  1 08:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-01 09:35:50] -rwxr-xr-x 1 boinc boinc      7986 Mar  1 08:28 run_atlas
[2026-03-01 09:35:50] -rw-r--r-- 1 boinc boinc       105 Mar  1 08:28 job.xml
[2026-03-01 09:35:50] -rw-r--r-- 2 boinc boinc     15845 Mar  1 08:28 start_atlas.sh
[2026-03-01 09:35:50] drwxrwx--x 2 boinc boinc      4096 Mar  1 08:28 shared
[2026-03-01 09:35:50] -rw-r--r-- 2 boinc boinc    597975 Mar  1 08:28 input.tar.gz
[2026-03-01 09:35:50] -rw-r--r-- 1 boinc boinc      7579 Mar  1 08:28 init_data.xml
[2026-03-01 09:35:50] -rw-r--r-- 2 boinc boinc 290464544 Mar  1 08:28 EVNT.48220205._000126.pool.root.1
[2026-03-01 09:35:50] -rw-r--r-- 1 boinc boinc         0 Mar  1 08:28 boinc_lockfile
[2026-03-01 09:35:50] -rw-r--r-- 1 boinc boinc      2588 Mar  1 08:28 pandaJob.out
[2026-03-01 09:35:50] -rw------- 1 boinc boinc        50 Mar  1 08:28 setup.sh.local
[2026-03-01 09:35:50] -rw------- 1 boinc boinc    998184 Mar  1 08:28 agis_schedconf.cvmfs.json
[2026-03-01 09:35:50] -rw------- 1 boinc boinc   1513015 Mar  1 08:28 agis_ddmendpoints.agis.ALL.json
[2026-03-01 09:35:50] -rw------- 1 boinc boinc       429 Mar  1 08:28 workernode_map.json
[2026-03-01 09:35:50] drwx------ 5 boinc boinc      4096 Mar  1 08:28 pilot3
[2026-03-01 09:35:50] -rw-r--r-- 1 boinc boinc       529 Mar  1 09:34 boinc_task_state.xml
[2026-03-01 09:35:50] -rw------- 1 boinc boinc 225158490 Mar  1 09:34 HITS.48838581._002906.pool.root.1
[2026-03-01 09:35:50] -rw------- 1 boinc boinc      1031 Mar  1 09:34 memory_monitor_summary.json
[2026-03-01 09:35:50] -rw------- 1 boinc boinc    388100 Mar  1 09:34 log.48838581._002906.job.log.tgz.1
[2026-03-01 09:35:50] -rw------- 1 boinc boinc      6333 Mar  1 09:35 heartbeat.json
[2026-03-01 09:35:50] -rw------- 1 boinc boinc        95 Mar  1 09:35 pilot_heartbeat.json
[2026-03-01 09:35:50] -rw-r--r-- 1 boinc boinc        27 Mar  1 09:35 wrapper_checkpoint.txt
[2026-03-01 09:35:50] -rw-r--r-- 1 boinc boinc      8192 Mar  1 09:35 boinc_mmap_file
[2026-03-01 09:35:50] -rw------- 1 boinc boinc      4827 Mar  1 09:35 pilotlog.txt
[2026-03-01 09:35:50] -rw------- 1 boinc boinc    603209 Mar  1 09:35 log.48838581._002906.job.log.1
[2026-03-01 09:35:50] -rw------- 1 boinc boinc       357 Mar  1 09:35 output.list
[2026-03-01 09:35:50] -rw-r--r-- 1 boinc boinc       620 Mar  1 09:35 runtime_log
[2026-03-01 09:35:50] -rw------- 1 boinc boinc   1013760 Mar  1 09:35 result.tar.gz
[2026-03-01 09:35:50] -rw-r--r-- 1 boinc boinc      9403 Mar  1 09:35 runtime_log.err
[2026-03-01 09:35:50] -rw------- 1 boinc boinc       650 Mar  1 09:35 DCSLDmdRiG9n9Rq4apOajLDm4fhM0noT9bVooX4SDm9a6KDmCkiagm.diag
[2026-03-01 09:35:50] -rw-r--r-- 1 boinc boinc     20961 Mar  1 09:35 stderr.txt
[2026-03-01 09:35:50] HITS file was successfully produced:
[2026-03-01 09:35:50] -rw------- 1 boinc boinc 225158490 Mar  1 09:34 shared/HITS.pool.root.1
[2026-03-01 09:35:50]  *** Contents of shared directory: ***
[2026-03-01 09:35:50] total 505144
[2026-03-01 09:35:50] -rw-r--r-- 2 boinc boinc     15845 Mar  1 08:28 start_atlas.sh
[2026-03-01 09:35:50] -rw-r--r-- 2 boinc boinc    597975 Mar  1 08:28 input.tar.gz
[2026-03-01 09:35:50] -rw-r--r-- 2 boinc boinc 290464544 Mar  1 08:28 ATLAS.root_0
[2026-03-01 09:35:50] -rw------- 1 boinc boinc 225158490 Mar  1 09:34 HITS.pool.root.1
[2026-03-01 09:35:50] -rw------- 1 boinc boinc   1013760 Mar  1 09:35 result.tar.gz
09:35:51 (2391125): run_atlas exited; CPU time 41884.280606
09:35:51 (2391125): called boinc_finish(0)

</stderr_txt>
]]>

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