Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:24:42 (3445): wrapper (7.7.26015): starting
13:24:42 (3445): wrapper: running run_atlas (--nthreads 8)
[2026-03-01 13:24:42] Arguments: --nthreads 8
[2026-03-01 13:24:42] Threads: 8
[2026-03-01 13:24:42] Checking for CVMFS
[2026-03-01 13:24:43] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-01 13:24:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-01 13:24:43] Running cvmfs_config stat atlas.cern.ch
[2026-03-01 13:24:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-01 13:24:45] 2.11.2.0 10929 108834 133900 156770 1 54 24503467 25165825 899 130560 158 35187945 99.841 20830262 765 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-01 13:24:45] CVMFS is ok
[2026-03-01 13:24:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-01 13:24:45] Checking for apptainer binary...
[2026-03-01 13:24:45] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-01 13:24:45] Running /usr/bin/apptainer --version
[2026-03-01 13:24:45] apptainer version 1.3.2-1.el7
[2026-03-01 13:24:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-01 13:24:56] cg-vwn424.simple-grid.lan
[2026-03-01 13:24:56] apptainer works
[2026-03-01 13:24:56] Set ATHENA_PROC_NUMBER=8
[2026-03-01 13:24:56] Set ATHENA_CORE_NUMBER=8
[2026-03-01 13:24:56] Starting ATLAS job with PandaID=7033996867
[2026-03-01 13:24:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-01 18:35:19]  *** The last 200 lines of the pilot log: ***
[2026-03-01 18:35:19] 2026-03-01 17:34:29,228 | INFO     | total number of processed events: 400 (read)
[2026-03-01 18:35:19] 2026-03-01 17:34:29,230 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-7033996867/memory_monitor_summary.json (trf name=prmon)
[2026-03-01 18:35:19] 2026-03-01 17:34:29,231 | INFO     | extracted standard info from prmon json
[2026-03-01 18:35:19] 2026-03-01 17:34:29,231 | INFO     | extracted standard memory fields from prmon json
[2026-03-01 18:35:19] 2026-03-01 17:34:29,231 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-01 18:35:19] 2026-03-01 17:34:29,231 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-01 18:35:19] 2026-03-01 17:34:29,232 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-01 18:35:19] 2026-03-01 17:34:29,238 | INFO     | fitting pss+swap vs Time
[2026-03-01 18:35:19] 2026-03-01 17:34:29,239 | INFO     | sum of square deviations: 7799669962.0
[2026-03-01 18:35:19] 2026-03-01 17:34:29,242 | INFO     | sum of deviations: 134473557184.00002
[2026-03-01 18:35:19] 2026-03-01 17:34:29,242 | INFO     | mean x: 1772377518.0
[2026-03-01 18:35:19] 2026-03-01 17:34:29,242 | INFO     | mean y: 2477318.614334471
[2026-03-01 18:35:19] 2026-03-01 17:34:29,242 | INFO     | intersect: -30554957890.771645
[2026-03-01 18:35:19] 2026-03-01 17:34:29,243 | INFO     | chi2: 8.152044738783268
[2026-03-01 18:35:19] 2026-03-01 17:34:29,244 | INFO     | sum of square deviations: 7407141672.0
[2026-03-01 18:35:19] 2026-03-01 17:34:29,247 | INFO     | sum of deviations: 151809214497.49997
[2026-03-01 18:35:19] 2026-03-01 17:34:29,247 | INFO     | mean x: 1772377365.5
[2026-03-01 18:35:19] 2026-03-01 17:34:29,247 | INFO     | mean y: 2483947.746527778
[2026-03-01 18:35:19] 2026-03-01 17:34:29,247 | INFO     | intersect: -36322353292.345535
[2026-03-01 18:35:19] 2026-03-01 17:34:29,248 | INFO     | chi2: 7.441380619122349
[2026-03-01 18:35:19] 2026-03-01 17:34:29,248 | INFO     | current chi2=7.441380619122349 (change=8.717618001774962 %)
[2026-03-01 18:35:19] 2026-03-01 17:34:29,248 | INFO     | right removable region: 287
[2026-03-01 18:35:19] 2026-03-01 17:34:29,249 | INFO     | sum of square deviations: 7407141672.0
[2026-03-01 18:35:19] 2026-03-01 17:34:29,251 | INFO     | sum of deviations: 30560829657.499992
[2026-03-01 18:35:19] 2026-03-01 17:34:29,252 | INFO     | mean x: 1772377670.5
[2026-03-01 18:35:19] 2026-03-01 17:34:29,252 | INFO     | mean y: 2517666.940972222
[2026-03-01 18:35:19] 2026-03-01 17:34:29,252 | INFO     | intersect: -7310064497.061567
[2026-03-01 18:35:19] 2026-03-01 17:34:29,252 | INFO     | chi2: 3.2210211809868365
[2026-03-01 18:35:19] 2026-03-01 17:34:29,253 | INFO     | current chi2=3.2210211809868365 (change=60.48818076693247 %)
[2026-03-01 18:35:19] 2026-03-01 17:34:29,253 | INFO     | sum of square deviations: 7028008982.0
[2026-03-01 18:35:19] 2026-03-01 17:34:29,261 | INFO     | sum of deviations: -38841787393.0
[2026-03-01 18:35:19] 2026-03-01 17:34:29,261 | INFO     | mean x: 1772377823.0
[2026-03-01 18:35:19] 2026-03-01 17:34:29,262 | INFO     | mean y: 2545512.8445229684
[2026-03-01 18:35:19] 2026-03-01 17:34:29,262 | INFO     | intersect: 9797968762.494858
[2026-03-01 18:35:19] 2026-03-01 17:34:29,262 | INFO     | chi2: 1.0026404719441495
[2026-03-01 18:35:19] 2026-03-01 17:34:29,262 | INFO     | current chi2=1.0026404719441495 (change=68.87196899348031 %)
[2026-03-01 18:35:19] 2026-03-01 17:34:29,263 | INFO     | sum of square deviations: 6662039329.5
[2026-03-01 18:35:19] 2026-03-01 17:34:29,266 | INFO     | sum of deviations: -48770782677.5
[2026-03-01 18:35:19] 2026-03-01 17:34:29,266 | INFO     | mean x: 1772377975.5
[2026-03-01 18:35:19] 2026-03-01 17:34:29,266 | INFO     | mean y: 2549628.535971223
[2026-03-01 18:35:19] 2026-03-01 17:34:29,266 | INFO     | intersect: 12977594774.657232
[2026-03-01 18:35:19] 2026-03-01 17:34:29,267 | INFO     | chi2: 0.9323933809983385
[2026-03-01 18:35:19] 2026-03-01 17:34:29,267 | INFO     | current chi2=0.9323933809983385 (change=7.006209395238142 %)
[2026-03-01 18:35:19] 2026-03-01 17:34:29,267 | INFO     | left removable region: 30
[2026-03-01 18:35:19] 2026-03-01 17:34:29,268 | INFO     | sum of square deviations: 5263458688.0
[2026-03-01 18:35:19] 2026-03-01 17:34:29,270 | INFO     | sum of deviations: -6897828638.0
[2026-03-01 18:35:19] 2026-03-01 17:34:29,270 | INFO     | mean x: 1772378250.0
[2026-03-01 18:35:19] 2026-03-01 17:34:29,270 | INFO     | mean y: 2547461.1750972765
[2026-03-01 18:35:19] 2026-03-01 17:34:29,270 | INFO     | intersect: 2325271391.371607
[2026-03-01 18:35:19] 2026-03-01 17:34:29,271 | INFO     | chi2: 0.07333035221591953
[2026-03-01 18:35:19] 2026-03-01 17:34:29,271 | INFO     | current memory leak: -1.31 B/s (using 257 data points, chi2=0.07)
[2026-03-01 18:35:19] 2026-03-01 17:34:29,272 | INFO     | could have reported an average CPU frequency of 1999 MHz (14 samples)
[2026-03-01 18:35:19] 2026-03-01 17:34:29,272 | INFO     | ..............................
[2026-03-01 18:35:19] 2026-03-01 17:34:29,272 | INFO     | . Timing measurements:
[2026-03-01 18:35:19] 2026-03-01 17:34:29,272 | INFO     | . get job = 0 s
[2026-03-01 18:35:19] 2026-03-01 17:34:29,272 | INFO     | . initial setup = 124 s
[2026-03-01 18:35:19] 2026-03-01 17:34:29,273 | INFO     | . payload setup = 166 s
[2026-03-01 18:35:19] 2026-03-01 17:34:29,273 | INFO     | . stage-in = 0 s
[2026-03-01 18:35:19] 2026-03-01 17:34:29,273 | INFO     | . payload execution = 17984 s
[2026-03-01 18:35:19] 2026-03-01 17:34:29,273 | INFO     | . stage-out = 4 s
[2026-03-01 18:35:19] 2026-03-01 17:34:29,273 | INFO     | . log creation = 1 s
[2026-03-01 18:35:19] 2026-03-01 17:34:29,273 | INFO     | ..............................
[2026-03-01 18:35:19] 2026-03-01 17:34:29,409 | INFO     | 
[2026-03-01 18:35:19] 2026-03-01 17:34:29,410 | INFO     | job summary report
[2026-03-01 18:35:19] 2026-03-01 17:34:29,410 | INFO     | --------------------------------------------------
[2026-03-01 18:35:19] 2026-03-01 17:34:29,410 | INFO     | PanDA job id: 7033996867
[2026-03-01 18:35:19] 2026-03-01 17:34:29,410 | INFO     | task id: 48838581
[2026-03-01 18:35:19] 2026-03-01 17:34:29,410 | INFO     | errors: (none)
[2026-03-01 18:35:19] 2026-03-01 17:34:29,410 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-01 18:35:19] 2026-03-01 17:34:29,410 | INFO     | pilot state: finished 
[2026-03-01 18:35:19] 2026-03-01 17:34:29,410 | INFO     | transexitcode: 0
[2026-03-01 18:35:19] 2026-03-01 17:34:29,410 | INFO     | exeerrorcode: 0
[2026-03-01 18:35:19] 2026-03-01 17:34:29,411 | INFO     | exeerrordiag: 
[2026-03-01 18:35:19] 2026-03-01 17:34:29,411 | INFO     | exitcode: 0
[2026-03-01 18:35:19] 2026-03-01 17:34:29,411 | INFO     | exitmsg: OK
[2026-03-01 18:35:19] 2026-03-01 17:34:29,411 | INFO     | cpuconsumptiontime: 67834 s
[2026-03-01 18:35:19] 2026-03-01 17:34:29,411 | INFO     | nevents: 400
[2026-03-01 18:35:19] 2026-03-01 17:34:29,411 | INFO     | neventsw: 0
[2026-03-01 18:35:19] 2026-03-01 17:34:29,411 | INFO     | pid: 11925
[2026-03-01 18:35:19] 2026-03-01 17:34:29,411 | INFO     | pgrp: 11925
[2026-03-01 18:35:19] 2026-03-01 17:34:29,411 | INFO     | corecount: 8
[2026-03-01 18:35:19] 2026-03-01 17:34:29,412 | INFO     | event service: False
[2026-03-01 18:35:19] 2026-03-01 17:34:29,412 | INFO     | sizes: {0: 2281210, 1: 2282268, 2: 2282356, 12: 2282356, 18155: 2314655, 18160: 2323653, 18161: 2324031}
[2026-03-01 18:35:19] 2026-03-01 17:34:29,412 | INFO     | --------------------------------------------------
[2026-03-01 18:35:19] 2026-03-01 17:34:29,412 | INFO     | 
[2026-03-01 18:35:19] 2026-03-01 17:34:29,412 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2026-03-01 18:35:19] 2026-03-01 17:34:30,059 | INFO     | PID=7439 has CPU usage=9.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-01 18:35:19] 2026-03-01 17:34:30,059 | INFO     | .. there are 2 such processes running
[2026-03-01 18:35:19] 2026-03-01 17:34:30,065 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-01 18:35:19] 2026-03-01 17:34:30,065 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-01 18:35:19] 2026-03-01 17:34:30,065 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-01 18:35:19] 2026-03-01 17:34:30,065 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-01 18:35:19] 2026-03-01 17:34:30,066 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-01 18:35:19] 2026-03-01 17:34:30,066 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-01 18:35:19] 2026-03-01 17:34:30,066 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-01 18:35:19] 2026-03-01 17:34:30,066 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-01 18:35:19] 2026-03-01 17:34:30,066 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-01 18:35:19] 2026-03-01 17:34:30,066 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-01 18:35:19] 2026-03-01 17:34:30,066 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-01 18:35:19] 2026-03-01 17:34:30,066 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-01 18:35:19] 2026-03-01 17:34:30,067 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-01 18:35:19] 2026-03-01 17:34:30,067 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-01 18:35:19] 2026-03-01 17:34:30,067 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-01 18:35:19] 2026-03-01 17:34:30,067 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-01 18:35:19] 2026-03-01 17:34:30,067 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-01 18:35:19] 2026-03-01 17:34:30,067 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-01 18:35:19] 2026-03-01 17:34:30,067 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-01 18:35:19] 2026-03-01 17:34:30,067 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-01 18:35:19] 2026-03-01 17:34:30,068 | INFO     | job 7033996867 has completed (purged errors)
[2026-03-01 18:35:19] 2026-03-01 17:34:30,068 | INFO     | overall cleanup function is called
[2026-03-01 18:35:19] 2026-03-01 17:34:31,088 | INFO     | --- collectZombieJob: --- 10, [11925]
[2026-03-01 18:35:19] 2026-03-01 17:34:31,089 | INFO     | zombie collector waiting for pid 11925
[2026-03-01 18:35:19] 2026-03-01 17:34:31,089 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-01 18:35:19] 2026-03-01 17:34:31,089 | INFO     | collected zombie processes
[2026-03-01 18:35:19] 2026-03-01 17:34:31,089 | INFO     | will attempt to kill all subprocesses of pid=11925
[2026-03-01 18:35:19] 2026-03-01 17:34:31,176 | INFO     | process IDs to be killed: [11925] (in reverse order)
[2026-03-01 18:35:19] 2026-03-01 17:34:32,178 | WARNING  | found no corresponding commands to process id(s)
[2026-03-01 18:35:19] 2026-03-01 17:34:32,178 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-01 18:35:19] 2026-03-01 17:34:32,181 | INFO     | did not find any defunct processes belonging to 11925
[2026-03-01 18:35:19] 2026-03-01 17:34:32,182 | INFO     | did not find any defunct processes belonging to 11925
[2026-03-01 18:35:19] 2026-03-01 17:34:32,183 | INFO     | ready for new job
[2026-03-01 18:35:19] 2026-03-01 17:34:32,183 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-01 18:35:19] 2026-03-01 17:34:32,185 | INFO     | **************************************
[2026-03-01 18:35:19] 2026-03-01 17:34:32,185 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-01 18:35:19] 2026-03-01 17:34:32,185 | INFO     | **************************************
[2026-03-01 18:35:19] 2026-03-01 17:34:32,186 | INFO     | 
[2026-03-01 18:35:19] 2026-03-01 17:34:32,186 | INFO     | pilot is running in a VM
[2026-03-01 18:35:19] 2026-03-01 17:34:32,186 | INFO     | architecture information:
[2026-03-01 18:35:19] 2026-03-01 17:34:32,191 | INFO     | executing command: cat /etc/os-release
[2026-03-01 18:35:19] 2026-03-01 17:34:32,368 | INFO     | cat /etc/os-release:
[2026-03-01 18:35:19] NAME="CentOS Linux"
[2026-03-01 18:35:19] VERSION="7 (Core)"
[2026-03-01 18:35:19] ID="centos"
[2026-03-01 18:35:19] ID_LIKE="rhel fedora"
[2026-03-01 18:35:19] VERSION_ID="7"
[2026-03-01 18:35:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-01 18:35:19] ANSI_COLOR="0;31"
[2026-03-01 18:35:19] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-01 18:35:19] HOME_URL="https://www.centos.org/"
[2026-03-01 18:35:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-01 18:35:19] 
[2026-03-01 18:35:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-01 18:35:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-01 18:35:19] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-01 18:35:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-01 18:35:19] 
[2026-03-01 18:35:19] 2026-03-01 17:34:32,368 | INFO     | **************************************
[2026-03-01 18:35:19] 2026-03-01 17:34:32,872 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2026-03-01 18:35:19] 2026-03-01 17:34:33,100 | INFO     | sufficient remaining disk space (496906534912 B)
[2026-03-01 18:35:19] 2026-03-01 17:34:33,100 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-01 18:35:19] 2026-03-01 17:34:33,100 | INFO     | current server update state: UPDATING_FINAL
[2026-03-01 18:35:19] 2026-03-01 17:34:33,101 | INFO     | update_server=False
[2026-03-01 18:35:19] 2026-03-01 17:34:33,101 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-01 18:35:19] 2026-03-01 17:34:33,101 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-01 18:35:19] 2026-03-01 17:34:33,102 | INFO     | aborting loop
[2026-03-01 18:35:19] 2026-03-01 17:34:33,936 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-01 18:35:19] 2026-03-01 17:34:34,022 | INFO     | all data control threads have been joined
[2026-03-01 18:35:19] 2026-03-01 17:34:34,028 | INFO     | all job control threads have been joined
[2026-03-01 18:35:19] 2026-03-01 17:34:34,106 | INFO     | [job] retrieve thread has finished
[2026-03-01 18:35:19] 2026-03-01 17:34:34,107 | INFO     | [job] job monitor thread has finished
[2026-03-01 18:35:19] 2026-03-01 17:34:34,111 | INFO     | all payload control threads have been joined
[2026-03-01 18:35:19] 2026-03-01 17:34:34,194 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-01 18:35:19] 2026-03-01 17:34:34,298 | INFO     | [payload] validate_post thread has finished
[2026-03-01 18:35:19] 2026-03-01 17:34:34,382 | INFO     | [payload] validate_pre thread has finished
[2026-03-01 18:35:19] 2026-03-01 17:34:34,428 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-01 18:35:19] 2026-03-01 17:34:34,653 | INFO     | [payload] failed_post thread has finished
[2026-03-01 18:35:19] 2026-03-01 17:34:34,940 | INFO     | [data] copytool_in thread has finished
[2026-03-01 18:35:19] 2026-03-01 17:34:34,957 | INFO     | [payload] execute_payloads thread has finished
[2026-03-01 18:35:19] 2026-03-01 17:34:35,028 | INFO     | [data] control thread has finished
[2026-03-01 18:35:19] 2026-03-01 17:34:35,034 | INFO     | [job] control thread has finished
[2026-03-01 18:35:19] 2026-03-01 17:34:35,074 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-01 18:35:19] 2026-03-01 17:34:35,117 | INFO     | [payload] control thread has finished
[2026-03-01 18:35:19] 2026-03-01 17:34:35,201 | INFO     | [job] create_data_payload thread has finished
[2026-03-01 18:35:19] 2026-03-01 17:34:35,434 | INFO     | [job] queue monitor thread has finished
[2026-03-01 18:35:19] 2026-03-01 17:34:35,580 | INFO     | [job] validate thread has finished
[2026-03-01 18:35:19] 2026-03-01 17:34:35,946 | INFO     | [data] copytool_out thread has finished
[2026-03-01 18:35:19] 2026-03-01 17:34:39,083 | INFO     | [data] queue_monitor thread has finished
[2026-03-01 18:35:19] 2026-03-01 17:35:02,252 | INFO     | PID=7439 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-01 18:35:19] 2026-03-01 17:35:02,252 | INFO     | .. there are 2 such processes running
[2026-03-01 18:35:19] 2026-03-01 17:35:02,257 | INFO     | found 0 job(s) in 20 queues
[2026-03-01 18:35:19] 2026-03-01 17:35:02,258 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-01 18:35:19] 2026-03-01 17:35:02,258 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-01 18:35:19] 2026-03-01 17:35:06,924 | INFO     | [monitor] cgroup control has ended
[2026-03-01 18:35:19] 2026-03-01 17:35:08,675 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140206025766720)>', '<ExcThread(monitor, started 140205432493824)>']
[2026-03-01 18:35:19] 2026-03-01 17:35:09,298 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-01 18:35:19] 2026-03-01 17:35:09,299 | INFO     | [monitor] control thread has ended
[2026-03-01 18:35:19] 2026-03-01 17:35:13,701 | INFO     | all workflow threads have been joined
[2026-03-01 18:35:19] 2026-03-01 17:35:13,702 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-01 18:35:19] 2026-03-01 17:35:13,702 | INFO     | traces error code: 0
[2026-03-01 18:35:19] 2026-03-01 17:35:13,702 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-01 18:35:19] 2026-03-01 17:35:14,141 [wrapper] ==== pilot stdout END ====
[2026-03-01 18:35:19] 2026-03-01 17:35:14,259 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-01 18:35:19] 2026-03-01 17:35:14,370 [wrapper] pilotpid: 7439
[2026-03-01 18:35:19] 2026-03-01 17:35:14,465 [wrapper] Pilot exit status: 0
[2026-03-01 18:35:19] 2026-03-01 17:35:15,016 [wrapper] pandaids: 7033996867
[2026-03-01 18:35:19] 2026-03-01 17:35:16,190 [wrapper] cleanup supervisor_pilot 18071 7440
[2026-03-01 18:35:19] 2026-03-01 17:35:16,303 [wrapper] Test setup, not cleaning
[2026-03-01 18:35:19] 2026-03-01 17:35:16,366 [wrapper] apfmon messages muted
[2026-03-01 18:35:19] 2026-03-01 17:35:16,447 [wrapper] ==== wrapper stdout END ====
[2026-03-01 18:35:19] 2026-03-01 17:35:16,527 [wrapper] ==== wrapper stderr END ====
[2026-03-01 18:35:19]  *** Error codes and diagnostics ***
[2026-03-01 18:35:19]     "exeErrorCode": 0,
[2026-03-01 18:35:19]     "exeErrorDiag": "",
[2026-03-01 18:35:19]     "pilotErrorCode": 0,
[2026-03-01 18:35:19]     "pilotErrorDiag": "",
[2026-03-01 18:35:19]  *** Listing of results directory ***
[2026-03-01 18:35:19] total 508064
[2026-03-01 18:35:19] -rw-r--r--. 1 boinc boinc    584627 Feb 28 23:55 pilot3.tar.gz
[2026-03-01 18:35:19] -rwx------. 1 boinc boinc     36322 Feb 28 23:56 runpilot2-wrapper.sh
[2026-03-01 18:35:19] -rw-r--r--. 1 boinc boinc      5111 Feb 28 23:58 queuedata.json
[2026-03-01 18:35:19] -rw-r--r--. 1 boinc boinc       100 Mar  1 13:24 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-01 18:35:19] -rwxr-xr-x. 1 boinc boinc      7986 Mar  1 13:24 run_atlas
[2026-03-01 18:35:19] -rw-r--r--. 1 boinc boinc       105 Mar  1 13:24 job.xml
[2026-03-01 18:35:19] -rw-r--r--. 2 boinc boinc 287746089 Mar  1 13:24 EVNT.48220205._000135.pool.root.1
[2026-03-01 18:35:19] -rw-r--r--. 1 boinc boinc      6390 Mar  1 13:24 init_data.xml
[2026-03-01 18:35:19] -rw-r--r--. 2 boinc boinc     15845 Mar  1 13:24 start_atlas.sh
[2026-03-01 18:35:19] drwxrwx--x. 2 boinc boinc        68 Mar  1 13:24 shared
[2026-03-01 18:35:19] -rw-r--r--. 2 boinc boinc    597978 Mar  1 13:24 input.tar.gz
[2026-03-01 18:35:19] -rw-r--r--. 1 boinc boinc         0 Mar  1 13:24 boinc_lockfile
[2026-03-01 18:35:19] -rw-r--r--. 1 boinc boinc      2588 Mar  1 13:24 pandaJob.out
[2026-03-01 18:35:19] -rw-------. 1 boinc boinc       415 Mar  1 13:31 workernode_map.json
[2026-03-01 18:35:19] -rw-------. 1 boinc boinc    998184 Mar  1 13:31 agis_schedconf.cvmfs.json
[2026-03-01 18:35:19] drwx------. 5 boinc boinc      4096 Mar  1 13:31 pilot3
[2026-03-01 18:35:19] -rw-------. 1 boinc boinc 222451974 Mar  1 18:32 HITS.48838581._003134.pool.root.1
[2026-03-01 18:35:19] -rw-r--r--. 1 boinc boinc       531 Mar  1 18:33 boinc_task_state.xml
[2026-03-01 18:35:19] -rw-------. 1 boinc boinc      1011 Mar  1 18:34 memory_monitor_summary.json
[2026-03-01 18:35:19] -rw-------. 1 boinc boinc   1513015 Mar  1 18:34 agis_ddmendpoints.agis.ALL.json
[2026-03-01 18:35:19] -rw-------. 1 boinc boinc    528610 Mar  1 18:34 log.48838581._003134.job.log.tgz.1
[2026-03-01 18:35:19] -rw-------. 1 boinc boinc      6317 Mar  1 18:34 heartbeat.json
[2026-03-01 18:35:19] -rw-------. 1 boinc boinc        95 Mar  1 18:35 pilot_heartbeat.json
[2026-03-01 18:35:19] -rw-r--r--. 1 boinc boinc        28 Mar  1 18:35 wrapper_checkpoint.txt
[2026-03-01 18:35:19] -rw-r--r--. 1 boinc boinc      8192 Mar  1 18:35 boinc_mmap_file
[2026-03-01 18:35:19] -rw-------. 1 boinc boinc      4879 Mar  1 18:35 pilotlog.txt
[2026-03-01 18:35:19] -rw-------. 1 boinc boinc   2543106 Mar  1 18:35 log.48838581._003134.job.log.1
[2026-03-01 18:35:19] -rw-------. 1 boinc boinc       357 Mar  1 18:35 output.list
[2026-03-01 18:35:19] -rw-r--r--. 1 boinc boinc       620 Mar  1 18:35 runtime_log
[2026-03-01 18:35:19] -rw-------. 1 boinc boinc   3092480 Mar  1 18:35 result.tar.gz
[2026-03-01 18:35:19] -rw-------. 1 boinc boinc       655 Mar  1 18:35 X5qLDmEQiG9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmYH8KDmCix6Xo.diag
[2026-03-01 18:35:19] -rw-r--r--. 1 boinc boinc      8816 Mar  1 18:35 runtime_log.err
[2026-03-01 18:35:19] -rw-r--r--. 1 boinc boinc     20790 Mar  1 18:35 stderr.txt
[2026-03-01 18:35:19] HITS file was successfully produced:
[2026-03-01 18:35:19] -rw-------. 1 boinc boinc 222451974 Mar  1 18:32 shared/HITS.pool.root.1
[2026-03-01 18:35:19]  *** Contents of shared directory: ***
[2026-03-01 18:35:19] total 501864
[2026-03-01 18:35:19] -rw-r--r--. 2 boinc boinc 287746089 Mar  1 13:24 ATLAS.root_0
[2026-03-01 18:35:19] -rw-r--r--. 2 boinc boinc     15845 Mar  1 13:24 start_atlas.sh
[2026-03-01 18:35:19] -rw-r--r--. 2 boinc boinc    597978 Mar  1 13:24 input.tar.gz
[2026-03-01 18:35:19] -rw-------. 1 boinc boinc 222451974 Mar  1 18:32 HITS.pool.root.1
[2026-03-01 18:35:19] -rw-------. 1 boinc boinc   3092480 Mar  1 18:35 result.tar.gz
18:35:20 (3445): run_atlas exited; CPU time 68036.116051
18:35:20 (3445): called boinc_finish(0)

</stderr_txt>
]]>

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