Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:51:48 (524262): wrapper (7.7.26015): starting
08:51:48 (524262): wrapper: running run_atlas (--nthreads 4)
[2026-03-01 08:51:48] Arguments: --nthreads 4
[2026-03-01 08:51:48] Threads: 4
[2026-03-01 08:51:48] Checking for CVMFS
[2026-03-01 08:51:48] No cvmfs_config command found, will try listing directly
[2026-03-01 08:51:48] CVMFS is ok
[2026-03-01 08:51:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-01 08:51:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-01 08:51:48] Further information can be found at the LHC@home message board.
[2026-03-01 08:51:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-01 08:51:48] Checking for apptainer binary...
[2026-03-01 08:51:48] which: no apptainer in ((null))
[2026-03-01 08:51:48] apptainer is not installed, using version from CVMFS
[2026-03-01 08:51:48] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-01 08:51:48] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot68/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut22.grid.cesnet.cz
[2026-03-01 08:51:48] apptainer works
[2026-03-01 08:51:48] Set ATHENA_PROC_NUMBER=4
[2026-03-01 08:51:48] Set ATHENA_CORE_NUMBER=4
[2026-03-01 08:51:48] Starting ATLAS job with PandaID=7033906796
[2026-03-01 08:51:48] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot68/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-01 10:32:19]  *** The last 200 lines of the pilot log: ***
[2026-03-01 10:32:19]  is_altstaged=None
[2026-03-01 10:32:19]  is_tar=False
[2026-03-01 10:32:19]  lfn=log.48838536._001900.job.log.tgz.1
[2026-03-01 10:32:19]  mtime=0
[2026-03-01 10:32:19]  protocol_id=None
[2026-03-01 10:32:19]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-01 10:32:19]  replicas=None
[2026-03-01 10:32:19]  scope=mc23_13p6TeV
[2026-03-01 10:32:19]  status=None
[2026-03-01 10:32:19]  status_code=0
[2026-03-01 10:32:19]  storage_token=
[2026-03-01 10:32:19]  surl=/var/lib/boinc/var/slot68/slots/0/PanDA_Pilot-7033906796/log.48838536._001900.job.log.tgz.1
[2026-03-01 10:32:19]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a1/0d/log.48838536._001900.job.log.tgz.1
[2026-03-01 10:32:19]  workdir=None
[2026-03-01 10:32:19] ]
[2026-03-01 10:32:19] 2026-03-01 09:31:17,644 | INFO     | transferring file log.48838536._001900.job.log.tgz.1 from /var/lib/boinc/var/slot68/slots/0/PanDA_Pilot-7033906796/log.48838536._001900.job.log.tgz.1 to /var/lib/b
[2026-03-01 10:32:19] 2026-03-01 09:31:17,644 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot68/slots/0/PanDA_Pilot-7033906796/log.48838536._001900.job.log.tgz.1 /var/lib/boinc/var/slot68/slots/0/lo
[2026-03-01 10:32:19] 2026-03-01 09:31:17,657 | INFO     | adding to output.list: log.48838536._001900.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a1/0d/log.48838536._001900.job.log.tg
[2026-03-01 10:32:19] 2026-03-01 09:31:17,657 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-01 10:32:19] 2026-03-01 09:31:17,657 | INFO     | summary of transferred files:
[2026-03-01 10:32:19] 2026-03-01 09:31:17,658 | INFO     |  -- lfn=log.48838536._001900.job.log.tgz.1, status_code=0, status=transferred
[2026-03-01 10:32:19] 2026-03-01 09:31:17,658 | INFO     | stage-out finished correctly
[2026-03-01 10:32:19] 2026-03-01 09:31:19,378 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-01 10:32:19] 2026-03-01 09:31:19,429 | INFO     | job 7033906796 has state=finished
[2026-03-01 10:32:19] 2026-03-01 09:31:19,430 | INFO     | preparing for final server update for job 7033906796 in state='finished'
[2026-03-01 10:32:19] 2026-03-01 09:31:19,430 | INFO     | reading metadata from: /var/lib/boinc/var/slot68/slots/0/PanDA_Pilot-7033906796/jobReport.json
[2026-03-01 10:32:19] 2026-03-01 09:31:19,432 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot68/slots/0/workernode_map.json
[2026-03-01 10:32:19] 2026-03-01 09:31:19,432 | INFO     | this job has now completed (state=finished)
[2026-03-01 10:32:19] 2026-03-01 09:31:19,432 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-01 10:32:19] 2026-03-01 09:31:19,432 | INFO     | log transfer has been attempted: DONE
[2026-03-01 10:32:19] 2026-03-01 09:31:19,433 | INFO     | job 7033906796 has finished - writing final server update
[2026-03-01 10:32:19] 2026-03-01 09:31:19,433 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_16212/.job.ad'
[2026-03-01 10:32:19] 2026-03-01 09:31:19,433 | INFO     | total number of processed events: 400 (read)
[2026-03-01 10:32:19] 2026-03-01 09:31:19,456 | INFO     | using path: /var/lib/boinc/var/slot68/slots/0/PanDA_Pilot-7033906796/memory_monitor_summary.json (trf name=prmon)
[2026-03-01 10:32:19] 2026-03-01 09:31:19,456 | INFO     | extracted standard info from prmon json
[2026-03-01 10:32:19] 2026-03-01 09:31:19,456 | INFO     | extracted standard memory fields from prmon json
[2026-03-01 10:32:19] 2026-03-01 09:31:19,456 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-01 10:32:19] 2026-03-01 09:31:19,456 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-01 10:32:19] 2026-03-01 09:31:19,456 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-01 10:32:19] 2026-03-01 09:31:19,458 | INFO     | fitting pss+swap vs Time
[2026-03-01 10:32:19] 2026-03-01 09:31:19,458 | INFO     | sum of square deviations: 233641590.0
[2026-03-01 10:32:19] 2026-03-01 09:31:19,458 | INFO     | sum of deviations: 416325914.99999964
[2026-03-01 10:32:19] 2026-03-01 09:31:19,458 | INFO     | mean x: 1772354596.0
[2026-03-01 10:32:19] 2026-03-01 09:31:19,458 | INFO     | mean y: 2347066.4945054944
[2026-03-01 10:32:19] 2026-03-01 09:31:19,458 | INFO     | intersect: -3155811328.5247836
[2026-03-01 10:32:19] 2026-03-01 09:31:19,458 | INFO     | chi2: 0.00023013480073402767
[2026-03-01 10:32:19] 2026-03-01 09:31:19,459 | INFO     | current memory leak: 1.78 B/s (using 91 data points, chi2=0.00)
[2026-03-01 10:32:19] 2026-03-01 09:31:19,459 | INFO     | could have reported an average CPU frequency of 3585 MHz (7 samples)
[2026-03-01 10:32:19] 2026-03-01 09:31:19,459 | INFO     | ..............................
[2026-03-01 10:32:19] 2026-03-01 09:31:19,459 | INFO     | . Timing measurements:
[2026-03-01 10:32:19] 2026-03-01 09:31:19,459 | INFO     | . get job = 0 s
[2026-03-01 10:32:19] 2026-03-01 09:31:19,459 | INFO     | . initial setup = 5 s
[2026-03-01 10:32:19] 2026-03-01 09:31:19,459 | INFO     | . payload setup = 6 s
[2026-03-01 10:32:19] 2026-03-01 09:31:19,459 | INFO     | . stage-in = 0 s
[2026-03-01 10:32:19] 2026-03-01 09:31:19,459 | INFO     | . payload execution = 5933 s
[2026-03-01 10:32:19] 2026-03-01 09:31:19,459 | INFO     | . stage-out = 0 s
[2026-03-01 10:32:19] 2026-03-01 09:31:19,459 | INFO     | . log creation = 0 s
[2026-03-01 10:32:19] 2026-03-01 09:31:19,459 | INFO     | ..............................
[2026-03-01 10:32:19] 2026-03-01 09:31:19,533 | INFO     | 
[2026-03-01 10:32:19] 2026-03-01 09:31:19,533 | INFO     | job summary report
[2026-03-01 10:32:19] 2026-03-01 09:31:19,533 | INFO     | --------------------------------------------------
[2026-03-01 10:32:19] 2026-03-01 09:31:19,533 | INFO     | PanDA job id: 7033906796
[2026-03-01 10:32:19] 2026-03-01 09:31:19,533 | INFO     | task id: 48838536
[2026-03-01 10:32:19] 2026-03-01 09:31:19,533 | INFO     | errors: (none)
[2026-03-01 10:32:19] 2026-03-01 09:31:19,533 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-01 10:32:19] 2026-03-01 09:31:19,533 | INFO     | pilot state: finished 
[2026-03-01 10:32:19] 2026-03-01 09:31:19,533 | INFO     | transexitcode: 0
[2026-03-01 10:32:19] 2026-03-01 09:31:19,533 | INFO     | exeerrorcode: 0
[2026-03-01 10:32:19] 2026-03-01 09:31:19,533 | INFO     | exeerrordiag: 
[2026-03-01 10:32:19] 2026-03-01 09:31:19,533 | INFO     | exitcode: 0
[2026-03-01 10:32:19] 2026-03-01 09:31:19,533 | INFO     | exitmsg: OK
[2026-03-01 10:32:19] 2026-03-01 09:31:19,533 | INFO     | cpuconsumptiontime: 22720 s
[2026-03-01 10:32:19] 2026-03-01 09:31:19,533 | INFO     | nevents: 400
[2026-03-01 10:32:19] 2026-03-01 09:31:19,533 | INFO     | neventsw: 0
[2026-03-01 10:32:19] 2026-03-01 09:31:19,533 | INFO     | pid: 534963
[2026-03-01 10:32:19] 2026-03-01 09:31:19,533 | INFO     | pgrp: 534963
[2026-03-01 10:32:19] 2026-03-01 09:31:19,533 | INFO     | corecount: 4
[2026-03-01 10:32:19] 2026-03-01 09:31:19,533 | INFO     | event service: False
[2026-03-01 10:32:19] 2026-03-01 09:31:19,533 | INFO     | sizes: {0: 2282296, 11: 2282296, 5943: 2318127, 5945: 2318321}
[2026-03-01 10:32:19] 2026-03-01 09:31:19,533 | INFO     | --------------------------------------------------
[2026-03-01 10:32:19] 2026-03-01 09:31:19,533 | INFO     | 
[2026-03-01 10:32:19] 2026-03-01 09:31:19,534 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot68/slots/0
[2026-03-01 10:32:19] 2026-03-01 09:31:19,538 | INFO     | time since job start (5956s) is within the limit (349056.0s)
[2026-03-01 10:32:19] 2026-03-01 09:31:19,550 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-01 10:32:19] 2026-03-01 09:31:19,551 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-01 10:32:19] 2026-03-01 09:31:19,551 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-01 10:32:19] 2026-03-01 09:31:19,551 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-01 10:32:19] 2026-03-01 09:31:19,551 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-01 10:32:19] 2026-03-01 09:31:19,551 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-01 10:32:19] 2026-03-01 09:31:19,551 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-01 10:32:19] 2026-03-01 09:31:19,551 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-01 10:32:19] 2026-03-01 09:31:19,551 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-01 10:32:19] 2026-03-01 09:31:19,551 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-01 10:32:19] 2026-03-01 09:31:19,551 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-01 10:32:19] 2026-03-01 09:31:19,551 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-01 10:32:19] 2026-03-01 09:31:19,551 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-01 10:32:19] 2026-03-01 09:31:19,551 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-01 10:32:19] 2026-03-01 09:31:19,551 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-01 10:32:19] 2026-03-01 09:31:19,551 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-01 10:32:19] 2026-03-01 09:31:19,551 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-01 10:32:19] 2026-03-01 09:31:19,551 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-01 10:32:19] 2026-03-01 09:31:19,551 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-01 10:32:19] 2026-03-01 09:31:19,551 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-01 10:32:19] 2026-03-01 09:31:19,551 | INFO     | job 7033906796 has completed (purged errors)
[2026-03-01 10:32:19] 2026-03-01 09:31:19,552 | INFO     | overall cleanup function is called
[2026-03-01 10:32:19] 2026-03-01 09:31:20,557 | INFO     | --- collectZombieJob: --- 10, [534963]
[2026-03-01 10:32:19] 2026-03-01 09:31:20,557 | INFO     | zombie collector waiting for pid 534963
[2026-03-01 10:32:19] 2026-03-01 09:31:20,557 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-01 10:32:19] 2026-03-01 09:31:20,557 | INFO     | collected zombie processes
[2026-03-01 10:32:19] 2026-03-01 09:31:20,557 | INFO     | will attempt to kill all subprocesses of pid=534963
[2026-03-01 10:32:19] 2026-03-01 09:31:21,047 | INFO     | process IDs to be killed: [534963] (in reverse order)
[2026-03-01 10:32:19] 2026-03-01 09:31:21,318 | WARNING  | found no corresponding commands to process id(s)
[2026-03-01 10:32:19] 2026-03-01 09:31:21,318 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-01 10:32:19] 2026-03-01 09:31:21,381 | INFO     | did not find any defunct processes belonging to 534963
[2026-03-01 10:32:19] 2026-03-01 09:31:21,460 | INFO     | did not find any defunct processes belonging to 534963
[2026-03-01 10:32:19] 2026-03-01 09:31:21,461 | INFO     | ready for new job
[2026-03-01 10:32:19] 2026-03-01 09:31:21,461 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-01 10:32:19] 2026-03-01 09:31:21,462 | INFO     | **************************************
[2026-03-01 10:32:19] 2026-03-01 09:31:21,462 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-01 10:32:19] 2026-03-01 09:31:21,462 | INFO     | **************************************
[2026-03-01 10:32:19] 2026-03-01 09:31:21,462 | INFO     | 
[2026-03-01 10:32:19] 2026-03-01 09:31:21,471 | INFO     | architecture information:
[2026-03-01 10:32:19] 2026-03-01 09:31:21,471 | INFO     | executing command: cat /etc/os-release
[2026-03-01 10:32:19] 2026-03-01 09:31:21,487 | INFO     | cat /etc/os-release:
[2026-03-01 10:32:19] NAME="CentOS Linux"
[2026-03-01 10:32:19] VERSION="7 (Core)"
[2026-03-01 10:32:19] ID="centos"
[2026-03-01 10:32:19] ID_LIKE="rhel fedora"
[2026-03-01 10:32:19] VERSION_ID="7"
[2026-03-01 10:32:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-01 10:32:19] ANSI_COLOR="0;31"
[2026-03-01 10:32:19] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-01 10:32:19] HOME_URL="https://www.centos.org/"
[2026-03-01 10:32:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-01 10:32:19] 
[2026-03-01 10:32:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-01 10:32:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-01 10:32:19] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-01 10:32:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-01 10:32:19] 
[2026-03-01 10:32:19] 2026-03-01 09:31:21,488 | INFO     | **************************************
[2026-03-01 10:32:19] 2026-03-01 09:31:21,750 | WARNING  | process 534963 can no longer be monitored (due to stat problems) - aborting
[2026-03-01 10:32:19] 2026-03-01 09:31:21,992 | INFO     | executing command: df -mP /var/lib/boinc/var/slot68/slots/0
[2026-03-01 10:32:19] 2026-03-01 09:31:22,007 | INFO     | sufficient remaining disk space (235684233216 B)
[2026-03-01 10:32:19] 2026-03-01 09:31:22,007 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-01 10:32:19] 2026-03-01 09:31:22,008 | INFO     | current server update state: UPDATING_FINAL
[2026-03-01 10:32:19] 2026-03-01 09:31:22,008 | INFO     | update_server=False
[2026-03-01 10:32:19] 2026-03-01 09:31:22,008 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-01 10:32:19] 2026-03-01 09:31:22,032 | INFO     | all data control threads have been joined
[2026-03-01 10:32:19] 2026-03-01 09:31:22,093 | INFO     | using path: /var/lib/boinc/var/slot68/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-01 10:32:19] 2026-03-01 09:31:22,138 | INFO     | all payload control threads have been joined
[2026-03-01 10:32:19] 2026-03-01 09:31:22,578 | INFO     | number of running child processes to parent process 534963: 1
[2026-03-01 10:32:19] 2026-03-01 09:31:22,578 | INFO     | maximum number of monitored processes: 6
[2026-03-01 10:32:19] 2026-03-01 09:31:22,578 | INFO     | aborting job monitoring since job object (job id=7033906796) has expired
[2026-03-01 10:32:19] 2026-03-01 09:31:22,579 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-01 10:32:19] 2026-03-01 09:31:22,579 | INFO     | will abort loop
[2026-03-01 10:32:19] 2026-03-01 09:31:23,009 | INFO     | [job] retrieve thread has finished
[2026-03-01 10:32:19] 2026-03-01 09:31:23,014 | INFO     | [payload] validate_post thread has finished
[2026-03-01 10:32:19] 2026-03-01 09:31:23,037 | INFO     | [data] control thread has finished
[2026-03-01 10:32:19] 2026-03-01 09:31:23,126 | INFO     | all job control threads have been joined
[2026-03-01 10:32:19] 2026-03-01 09:31:23,144 | INFO     | [payload] control thread has finished
[2026-03-01 10:32:19] 2026-03-01 09:31:23,210 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-01 10:32:19] 2026-03-01 09:31:23,365 | INFO     | [job] validate thread has finished
[2026-03-01 10:32:19] 2026-03-01 09:31:23,419 | INFO     | [job] create_data_payload thread has finished
[2026-03-01 10:32:19] 2026-03-01 09:31:23,580 | INFO     | [job] job monitor thread has finished
[2026-03-01 10:32:19] 2026-03-01 09:31:23,582 | INFO     | [payload] validate_pre thread has finished
[2026-03-01 10:32:19] 2026-03-01 09:31:23,890 | INFO     | [data] copytool_in thread has finished
[2026-03-01 10:32:19] 2026-03-01 09:31:24,124 | INFO     | [payload] execute_payloads thread has finished
[2026-03-01 10:32:19] 2026-03-01 09:31:24,132 | INFO     | [job] control thread has finished
[2026-03-01 10:32:19] 2026-03-01 09:31:24,143 | INFO     | [payload] failed_post thread has finished
[2026-03-01 10:32:19] 2026-03-01 09:31:24,520 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-01 10:32:19] 2026-03-01 09:31:25,215 | INFO     | [data] copytool_out thread has finished
[2026-03-01 10:32:19] 2026-03-01 09:31:25,434 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-01 10:32:19] 2026-03-01 09:31:25,526 | INFO     | [job] queue monitor thread has finished
[2026-03-01 10:32:19] 2026-03-01 09:31:29,440 | INFO     | [data] queue_monitor thread has finished
[2026-03-01 10:32:19] 2026-03-01 09:31:32,375 | INFO     | job.realtimelogging is not enabled
[2026-03-01 10:32:19] 2026-03-01 09:31:33,381 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-01 10:32:19] 2026-03-01 09:31:53,183 | INFO     | PID=528891 has CPU usage=9.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-01 10:32:19] 2026-03-01 09:31:53,183 | INFO     | .. there are 50 such processes running
[2026-03-01 10:32:19] 2026-03-01 09:31:53,183 | INFO     | found 0 job(s) in 20 queues
[2026-03-01 10:32:19] 2026-03-01 09:31:53,183 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-01 10:32:19] 2026-03-01 09:31:53,184 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-01 10:32:19] 2026-03-01 09:32:12,634 | INFO     | [monitor] cgroup control has ended
[2026-03-01 10:32:19] 2026-03-01 09:32:13,941 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22512012654400)>', '<ExcThread(monitor, started 22511766206208)>']
[2026-03-01 10:32:19] 2026-03-01 09:32:14,285 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-01 10:32:19] 2026-03-01 09:32:14,285 | INFO     | [monitor] control thread has ended
[2026-03-01 10:32:19] 2026-03-01 09:32:18,966 | INFO     | all workflow threads have been joined
[2026-03-01 10:32:19] 2026-03-01 09:32:18,966 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-01 10:32:19] 2026-03-01 09:32:18,966 | INFO     | traces error code: 0
[2026-03-01 10:32:19] 2026-03-01 09:32:18,966 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-01 10:32:19] 2026-03-01 09:32:19,099 [wrapper] ==== pilot stdout END ====
[2026-03-01 10:32:19] 2026-03-01 09:32:19,101 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-01 10:32:19] 2026-03-01 09:32:19,104 [wrapper] pilotpid: 528891
[2026-03-01 10:32:19] 2026-03-01 09:32:19,106 [wrapper] Pilot exit status: 0
[2026-03-01 10:32:19] 2026-03-01 09:32:19,115 [wrapper] pandaids: 7033906796
[2026-03-01 10:32:19] 2026-03-01 09:32:19,245 [wrapper] cleanup supervisor_pilot 1240976 528892
[2026-03-01 10:32:19] 2026-03-01 09:32:19,249 [wrapper] Test setup, not cleaning
[2026-03-01 10:32:19] 2026-03-01 09:32:19,251 [wrapper] apfmon messages muted
[2026-03-01 10:32:19] 2026-03-01 09:32:19,254 [wrapper] ==== wrapper stdout END ====
[2026-03-01 10:32:19] 2026-03-01 09:32:19,256 [wrapper] ==== wrapper stderr END ====
[2026-03-01 10:32:19]  *** Error codes and diagnostics ***
[2026-03-01 10:32:19]     "exeErrorCode": 0,
[2026-03-01 10:32:19]     "exeErrorDiag": "",
[2026-03-01 10:32:19]     "pilotErrorCode": 0,
[2026-03-01 10:32:19]     "pilotErrorDiag": "",
[2026-03-01 10:32:19]  *** Listing of results directory ***
[2026-03-01 10:32:19] total 469904
[2026-03-01 10:32:19] -rw-r--r--. 1 boinc boinc    584627 Feb 28 23:55 pilot3.tar.gz
[2026-03-01 10:32:19] -rw-r--r--. 1 boinc boinc      5111 Feb 28 23:56 queuedata.json
[2026-03-01 10:32:19] -rwx------. 1 boinc boinc     36322 Feb 28 23:56 runpilot2-wrapper.sh
[2026-03-01 10:32:19] -rw-r--r--. 1 boinc boinc       100 Mar  1 08:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-01 10:32:19] -rwxr-xr-x. 1 boinc boinc      7986 Mar  1 08:51 run_atlas
[2026-03-01 10:32:19] -rw-r--r--. 1 boinc boinc       105 Mar  1 08:51 job.xml
[2026-03-01 10:32:19] -rw-r--r--. 1 boinc boinc      6701 Mar  1 08:51 init_data.xml
[2026-03-01 10:32:19] -rw-r--r--. 2 boinc boinc 270494960 Mar  1 08:51 EVNT.48343704._000076.pool.root.1
[2026-03-01 10:32:19] -rw-r--r--. 2 boinc boinc     15845 Mar  1 08:51 start_atlas.sh
[2026-03-01 10:32:19] drwxrwx--x. 2 boinc boinc      4096 Mar  1 08:51 shared
[2026-03-01 10:32:19] -rw-r--r--. 2 boinc boinc    597973 Mar  1 08:51 input.tar.gz
[2026-03-01 10:32:19] -rw-r--r--. 1 boinc boinc         0 Mar  1 08:51 boinc_lockfile
[2026-03-01 10:32:19] -rw-r--r--. 1 boinc boinc      2574 Mar  1 08:51 pandaJob.out
[2026-03-01 10:32:19] -rw-------. 1 boinc boinc    998782 Mar  1 08:51 agis_schedconf.cvmfs.json
[2026-03-01 10:32:19] -rw-------. 1 boinc boinc   1513015 Mar  1 08:51 agis_ddmendpoints.agis.ALL.json
[2026-03-01 10:32:19] -rw-------. 1 boinc boinc       444 Mar  1 08:52 workernode_map.json
[2026-03-01 10:32:19] drwx------. 5 boinc boinc      4096 Mar  1 08:52 pilot3
[2026-03-01 10:32:19] -rw-------. 1 boinc boinc 204476748 Mar  1 10:30 HITS.48838536._001900.pool.root.1
[2026-03-01 10:32:19] -rw-r--r--. 1 boinc boinc       529 Mar  1 10:30 boinc_task_state.xml
[2026-03-01 10:32:19] -rw-------. 1 boinc boinc      1031 Mar  1 10:31 memory_monitor_summary.json
[2026-03-01 10:32:19] -rw-------. 1 boinc boinc    281463 Mar  1 10:31 log.48838536._001900.job.log.tgz.1
[2026-03-01 10:32:19] -rw-------. 1 boinc boinc      6351 Mar  1 10:31 heartbeat.json
[2026-03-01 10:32:19] -rw-------. 1 boinc boinc        95 Mar  1 10:31 pilot_heartbeat.json
[2026-03-01 10:32:19] -rw-r--r--. 1 boinc boinc      8192 Mar  1 10:31 boinc_mmap_file
[2026-03-01 10:32:19] -rw-r--r--. 1 boinc boinc        27 Mar  1 10:31 wrapper_checkpoint.txt
[2026-03-01 10:32:19] -rw-------. 1 boinc boinc      5431 Mar  1 10:32 pilotlog.txt
[2026-03-01 10:32:19] -rw-------. 1 boinc boinc    857088 Mar  1 10:32 log.48838536._001900.job.log.1
[2026-03-01 10:32:19] -rw-------. 1 boinc boinc       357 Mar  1 10:32 output.list
[2026-03-01 10:32:19] -rw-r--r--. 1 boinc boinc       620 Mar  1 10:32 runtime_log
[2026-03-01 10:32:19] -rw-------. 1 boinc boinc   1157120 Mar  1 10:32 result.tar.gz
[2026-03-01 10:32:19] -rw-r--r--. 1 boinc boinc      9204 Mar  1 10:32 runtime_log.err
[2026-03-01 10:32:19] -rw-------. 1 boinc boinc       662 Mar  1 10:32 gXfKDmpPiG9n9Rq4apOajLDm4fhM0noT9bVooX4SDmPU6KDmVUbdUo.diag
[2026-03-01 10:32:19] -rw-r--r--. 1 boinc boinc     21313 Mar  1 10:32 stderr.txt
[2026-03-01 10:32:19] HITS file was successfully produced:
[2026-03-01 10:32:19] -rw-------. 1 boinc boinc 204476748 Mar  1 10:30 shared/HITS.pool.root.1
[2026-03-01 10:32:19]  *** Contents of shared directory: ***
[2026-03-01 10:32:19] total 465584
[2026-03-01 10:32:19] -rw-r--r--. 2 boinc boinc 270494960 Mar  1 08:51 ATLAS.root_0
[2026-03-01 10:32:19] -rw-r--r--. 2 boinc boinc     15845 Mar  1 08:51 start_atlas.sh
[2026-03-01 10:32:19] -rw-r--r--. 2 boinc boinc    597973 Mar  1 08:51 input.tar.gz
[2026-03-01 10:32:19] -rw-------. 1 boinc boinc 204476748 Mar  1 10:30 HITS.pool.root.1
[2026-03-01 10:32:19] -rw-------. 1 boinc boinc   1157120 Mar  1 10:32 result.tar.gz
10:32:20 (524262): run_atlas exited; CPU time 22994.880220
10:32:20 (524262): called boinc_finish(0)

</stderr_txt>
]]>

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