Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:22:06 (3621656): wrapper (7.7.26015): starting
08:22:06 (3621656): wrapper: running run_atlas (--nthreads 3)
[2026-03-01 08:22:06] Arguments: --nthreads 3
[2026-03-01 08:22:06] Threads: 3
[2026-03-01 08:22:06] Checking for CVMFS
[2026-03-01 08:22:06] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-01 08:22:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-01 08:22:06] Running cvmfs_config stat atlas.cern.ch
[2026-03-01 08:22:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-01 08:22:06] 2.9.2.0 2914701 5177 82184 156762 3 49 17925355 36864001 0 130560 0 1974564 99.979 213237 7009 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-01 08:22:06] CVMFS is ok
[2026-03-01 08:22:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-01 08:22:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-01 08:22:06] Further information can be found at the LHC@home message board.
[2026-03-01 08:22:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-01 08:22:06] Checking for apptainer binary...
[2026-03-01 08:22:06] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-01 08:22:06] Running /usr/bin/apptainer --version
[2026-03-01 08:22:06] apptainer version 1.4.1-1.1
[2026-03-01 08:22:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-01 08:22:06] thA330a
[2026-03-01 08:22:06] apptainer works
[2026-03-01 08:22:06] Set ATHENA_PROC_NUMBER=3
[2026-03-01 08:22:06] Set ATHENA_CORE_NUMBER=3
[2026-03-01 08:22:06] Starting ATLAS job with PandaID=7034241506
[2026-03-01 08:22:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-01 10:14:30]  *** The last 200 lines of the pilot log: ***
[2026-03-01 10:14:30] 2026-03-01 09:13:47,941 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-01 10:14:30] 2026-03-01 09:13:47,941 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-01 10:14:30] 2026-03-01 09:13:47,941 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-01 10:14:30] 2026-03-01 09:13:47,941 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-01 10:14:30] 2026-03-01 09:13:47,941 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-01 10:14:30] 2026-03-01 09:13:47,941 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-01 10:14:30] 2026-03-01 09:13:47,941 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-01 10:14:30] 2026-03-01 09:13:47,941 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-01 10:14:30] 2026-03-01 09:13:47,941 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-01 10:14:30] 2026-03-01 09:13:47,941 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-01 10:14:30] 2026-03-01 09:13:47,941 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-01 10:14:30] 2026-03-01 09:13:47,941 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-01 10:14:30] 2026-03-01 09:13:47,942 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-01 10:14:30] 2026-03-01 09:13:47,942 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-01 10:14:30] 2026-03-01 09:13:47,942 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-01 10:14:30] 2026-03-01 09:13:47,942 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-01 10:14:30] 2026-03-01 09:13:47,942 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-01 10:14:30] 2026-03-01 09:13:47,942 | INFO     | job 7034241506 has completed (purged errors)
[2026-03-01 10:14:30] 2026-03-01 09:13:47,942 | INFO     | overall cleanup function is called
[2026-03-01 10:14:30] 2026-03-01 09:13:48,948 | INFO     | --- collectZombieJob: --- 10, [3630124]
[2026-03-01 10:14:30] 2026-03-01 09:13:48,949 | INFO     | zombie collector waiting for pid 3630124
[2026-03-01 10:14:30] 2026-03-01 09:13:48,949 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-01 10:14:30] 2026-03-01 09:13:48,949 | INFO     | collected zombie processes
[2026-03-01 10:14:30] 2026-03-01 09:13:48,949 | INFO     | will attempt to kill all subprocesses of pid=3630124
[2026-03-01 10:14:30] 2026-03-01 09:13:48,992 | INFO     | process IDs to be killed: [3630124] (in reverse order)
[2026-03-01 10:14:30] 2026-03-01 09:13:49,015 | WARNING  | found no corresponding commands to process id(s)
[2026-03-01 10:14:30] 2026-03-01 09:13:49,016 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-01 10:14:30] 2026-03-01 09:13:49,017 | INFO     | did not find any defunct processes belonging to 3630124
[2026-03-01 10:14:30] 2026-03-01 09:13:49,018 | INFO     | did not find any defunct processes belonging to 3630124
[2026-03-01 10:14:30] 2026-03-01 09:13:49,018 | INFO     | ready for new job
[2026-03-01 10:14:30] 2026-03-01 09:13:49,018 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-01 10:14:30] 2026-03-01 09:13:49,019 | INFO     | **************************************
[2026-03-01 10:14:30] 2026-03-01 09:13:49,019 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-01 10:14:30] 2026-03-01 09:13:49,019 | INFO     | **************************************
[2026-03-01 10:14:30] 2026-03-01 09:13:49,019 | INFO     | 
[2026-03-01 10:14:30] 2026-03-01 09:13:49,019 | INFO     | architecture information:
[2026-03-01 10:14:30] 2026-03-01 09:13:49,019 | INFO     | executing command: cat /etc/os-release
[2026-03-01 10:14:30] 2026-03-01 09:13:49,028 | INFO     | cat /etc/os-release:
[2026-03-01 10:14:30] NAME="CentOS Linux"
[2026-03-01 10:14:30] VERSION="7 (Core)"
[2026-03-01 10:14:30] ID="centos"
[2026-03-01 10:14:30] ID_LIKE="rhel fedora"
[2026-03-01 10:14:30] VERSION_ID="7"
[2026-03-01 10:14:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-01 10:14:30] ANSI_COLOR="0;31"
[2026-03-01 10:14:30] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-01 10:14:30] HOME_URL="https://www.centos.org/"
[2026-03-01 10:14:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-01 10:14:30] 
[2026-03-01 10:14:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-01 10:14:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-01 10:14:30] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-01 10:14:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-01 10:14:30] 
[2026-03-01 10:14:30] 2026-03-01 09:13:49,028 | INFO     | **************************************
[2026-03-01 10:14:30] 2026-03-01 09:13:49,531 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-01 10:14:30] 2026-03-01 09:13:49,543 | INFO     | sufficient remaining disk space (243607273472 B)
[2026-03-01 10:14:30] 2026-03-01 09:13:49,543 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-01 10:14:30] 2026-03-01 09:13:49,543 | INFO     | current server update state: UPDATING_FINAL
[2026-03-01 10:14:30] 2026-03-01 09:13:49,543 | INFO     | update_server=False
[2026-03-01 10:14:30] 2026-03-01 09:13:49,543 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-01 10:14:30] 2026-03-01 09:13:49,544 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-01 10:14:30] 2026-03-01 09:13:49,544 | INFO     | found 0 job(s) in 20 queues
[2026-03-01 10:14:30] 2026-03-01 09:13:49,544 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-01 10:14:30] 2026-03-01 09:13:49,544 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-01 10:14:30] 2026-03-01 09:13:49,544 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-01 10:14:30] 2026-03-01 09:13:49,544 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-01 10:14:30] 2026-03-01 09:13:49,544 | INFO     | aborting loop
[2026-03-01 10:14:30] 2026-03-01 09:13:49,711 | INFO     | all job control threads have been joined
[2026-03-01 10:14:30] 2026-03-01 09:13:50,102 | INFO     | all payload control threads have been joined
[2026-03-01 10:14:30] 2026-03-01 09:13:50,442 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-01 10:14:30] 2026-03-01 09:13:50,516 | INFO     | all data control threads have been joined
[2026-03-01 10:14:30] 2026-03-01 09:13:50,546 | INFO     | [job] retrieve thread has finished
[2026-03-01 10:14:30] 2026-03-01 09:13:50,549 | INFO     | [job] queue monitor thread has finished
[2026-03-01 10:14:30] 2026-03-01 09:13:50,550 | INFO     | [job] job monitor thread has finished
[2026-03-01 10:14:30] 2026-03-01 09:13:50,717 | INFO     | [job] control thread has finished
[2026-03-01 10:14:30] 2026-03-01 09:13:51,108 | INFO     | [payload] control thread has finished
[2026-03-01 10:14:30] 2026-03-01 09:13:51,119 | INFO     | [payload] execute_payloads thread has finished
[2026-03-01 10:14:30] 2026-03-01 09:13:51,379 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-01 10:14:30] 2026-03-01 09:13:51,522 | INFO     | [data] control thread has finished
[2026-03-01 10:14:30] 2026-03-01 09:13:51,540 | INFO     | [payload] failed_post thread has finished
[2026-03-01 10:14:30] 2026-03-01 09:13:51,666 | INFO     | [job] validate thread has finished
[2026-03-01 10:14:30] 2026-03-01 09:13:51,687 | INFO     | [job] create_data_payload thread has finished
[2026-03-01 10:14:30] 2026-03-01 09:13:51,754 | INFO     | [payload] validate_pre thread has finished
[2026-03-01 10:14:30] 2026-03-01 09:13:51,907 | INFO     | [data] copytool_in thread has finished
[2026-03-01 10:14:30] 2026-03-01 09:13:52,125 | INFO     | [payload] validate_post thread has finished
[2026-03-01 10:14:30] 2026-03-01 09:13:52,448 | INFO     | [data] copytool_out thread has finished
[2026-03-01 10:14:30] 2026-03-01 09:13:55,386 | INFO     | [data] queue_monitor thread has finished
[2026-03-01 10:14:30] 2026-03-01 09:14:00,215 | INFO     | job.realtimelogging is not enabled
[2026-03-01 10:14:30] 2026-03-01 09:14:01,221 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-01 10:14:30] 2026-03-01 09:14:24,005 | INFO     | [monitor] cgroup control has ended
[2026-03-01 10:14:30] 2026-03-01 09:14:25,347 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139927314126656)>', '<ExcThread(monitor, started 139927032706816)>']
[2026-03-01 10:14:30] 2026-03-01 09:14:25,717 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-01 10:14:30] 2026-03-01 09:14:25,717 | INFO     | [monitor] control thread has ended
[2026-03-01 10:14:30] 2026-03-01 09:14:30,367 | INFO     | all workflow threads have been joined
[2026-03-01 10:14:30] 2026-03-01 09:14:30,367 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-01 10:14:30] 2026-03-01 09:14:30,368 | INFO     | traces error code: 0
[2026-03-01 10:14:30] 2026-03-01 09:14:30,368 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-01 10:14:30] 2026-03-01 09:14:30,418 [wrapper] ==== pilot stdout END ====
[2026-03-01 10:14:30] 2026-03-01 09:14:30,421 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-01 10:14:30] 2026-03-01 09:14:30,423 [wrapper] pilotpid: 3625697
[2026-03-01 10:14:30] 2026-03-01 09:14:30,425 [wrapper] Pilot exit status: 0
[2026-03-01 10:14:30] 2026-03-01 09:14:30,432 [wrapper] pandaids: 7034241506
[2026-03-01 10:14:30] 2026-03-01 09:14:30,448 [wrapper] cleanup supervisor_pilot 3635792 3625698
[2026-03-01 10:14:30] 2026-03-01 09:14:30,451 [wrapper] Test setup, not cleaning
[2026-03-01 10:14:30] 2026-03-01 09:14:30,453 [wrapper] apfmon messages muted
[2026-03-01 10:14:30] 2026-03-01 09:14:30,455 [wrapper] ==== wrapper stdout END ====
[2026-03-01 10:14:30] 2026-03-01 09:14:30,457 [wrapper] ==== wrapper stderr END ====
[2026-03-01 10:14:30]  *** Error codes and diagnostics ***
[2026-03-01 10:14:30]     "exeErrorCode": 0,
[2026-03-01 10:14:30]     "exeErrorDiag": "",
[2026-03-01 10:14:30]     "pilotErrorCode": 0,
[2026-03-01 10:14:30]     "pilotErrorDiag": "",
[2026-03-01 10:14:30]  *** Listing of results directory ***
[2026-03-01 10:14:30] total 419288
[2026-03-01 10:14:30] -rw-r--r-- 1 boinc boinc    584627 Mar  1 03:30 pilot3.tar.gz
[2026-03-01 10:14:30] -rwx------ 1 boinc boinc     36322 Mar  1 03:34 runpilot2-wrapper.sh
[2026-03-01 10:14:30] -rw-r--r-- 1 boinc boinc      5111 Mar  1 03:35 queuedata.json
[2026-03-01 10:14:30] -rw-r--r-- 1 boinc boinc       100 Mar  1 08:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-01 10:14:30] -rwxr-xr-x 1 boinc boinc      7986 Mar  1 08:22 run_atlas
[2026-03-01 10:14:30] -rw-r--r-- 1 boinc boinc       105 Mar  1 08:22 job.xml
[2026-03-01 10:14:30] -rw-r--r-- 2 boinc boinc 231703837 Mar  1 08:22 EVNT.48453119._000002.pool.root.1
[2026-03-01 10:14:30] drwxrwx--x 2 boinc boinc      4096 Mar  1 08:22 shared
[2026-03-01 10:14:30] -rw-r--r-- 2 boinc boinc    597961 Mar  1 08:22 input.tar.gz
[2026-03-01 10:14:30] -rw-r--r-- 2 boinc boinc     15845 Mar  1 08:22 start_atlas.sh
[2026-03-01 10:14:30] -rw-r--r-- 1 boinc boinc         0 Mar  1 08:22 boinc_setup_complete
[2026-03-01 10:14:30] -rw-r--r-- 1 boinc boinc      6440 Mar  1 08:22 init_data.xml
[2026-03-01 10:14:30] -rw-r--r-- 1 boinc boinc         0 Mar  1 08:22 boinc_lockfile
[2026-03-01 10:14:30] -rw-r--r-- 1 boinc boinc      2628 Mar  1 08:22 pandaJob.out
[2026-03-01 10:14:30] -rw------- 1 boinc boinc    998782 Mar  1 08:22 agis_schedconf.cvmfs.json
[2026-03-01 10:14:30] -rw------- 1 boinc boinc   1513015 Mar  1 08:22 agis_ddmendpoints.agis.ALL.json
[2026-03-01 10:14:30] -rw------- 1 boinc boinc       427 Mar  1 08:22 workernode_map.json
[2026-03-01 10:14:30] drwx------ 5 boinc boinc      4096 Mar  1 08:22 pilot3
[2026-03-01 10:14:30] -rw------- 1 boinc boinc 191259388 Mar  1 10:13 HITS.48844362._000030.pool.root.1
[2026-03-01 10:14:30] -rw-r--r-- 1 boinc boinc       530 Mar  1 10:13 boinc_task_state.xml
[2026-03-01 10:14:30] -rw------- 1 boinc boinc      1015 Mar  1 10:13 memory_monitor_summary.json
[2026-03-01 10:14:30] -rw------- 1 boinc boinc    267681 Mar  1 10:13 log.48844362._000030.job.log.tgz.1
[2026-03-01 10:14:30] -rw------- 1 boinc boinc        95 Mar  1 10:13 pilot_heartbeat.json
[2026-03-01 10:14:30] -rw------- 1 boinc boinc      6298 Mar  1 10:13 heartbeat.json
[2026-03-01 10:14:30] -rw-r--r-- 1 boinc boinc        27 Mar  1 10:14 wrapper_checkpoint.txt
[2026-03-01 10:14:30] -rw-r--r-- 1 boinc boinc      8192 Mar  1 10:14 boinc_mmap_file
[2026-03-01 10:14:30] -rw------- 1 boinc boinc      4624 Mar  1 10:14 pilotlog.txt
[2026-03-01 10:14:30] -rw------- 1 boinc boinc    964923 Mar  1 10:14 log.48844362._000030.job.log.1
[2026-03-01 10:14:30] -rw------- 1 boinc boinc       357 Mar  1 10:14 output.list
[2026-03-01 10:14:30] -rw-r--r-- 1 boinc boinc       620 Mar  1 10:14 runtime_log
[2026-03-01 10:14:30] -rw------- 1 boinc boinc   1249280 Mar  1 10:14 result.tar.gz
[2026-03-01 10:14:30] -rw-r--r-- 1 boinc boinc      8901 Mar  1 10:14 runtime_log.err
[2026-03-01 10:14:30] -rw------- 1 boinc boinc       658 Mar  1 10:14 XtdNDmdolG9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmrl8KDmql2jen.diag
[2026-03-01 10:14:30] -rw-r--r-- 1 boinc boinc     12561 Mar  1 10:14 stderr.txt
[2026-03-01 10:14:30] HITS file was successfully produced:
[2026-03-01 10:14:30] -rw------- 1 boinc boinc 191259388 Mar  1 10:13 shared/HITS.pool.root.1
[2026-03-01 10:14:30]  *** Contents of shared directory: ***
[2026-03-01 10:14:30] total 414884
[2026-03-01 10:14:30] -rw-r--r-- 2 boinc boinc 231703837 Mar  1 08:22 ATLAS.root_0
[2026-03-01 10:14:30] -rw-r--r-- 2 boinc boinc    597961 Mar  1 08:22 input.tar.gz
[2026-03-01 10:14:30] -rw-r--r-- 2 boinc boinc     15845 Mar  1 08:22 start_atlas.sh
[2026-03-01 10:14:30] -rw------- 1 boinc boinc 191259388 Mar  1 10:13 HITS.pool.root.1
[2026-03-01 10:14:30] -rw------- 1 boinc boinc   1249280 Mar  1 10:14 result.tar.gz
10:14:32 (3621656): run_atlas exited; CPU time 19314.210530
10:14:32 (3621656): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN