Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:25:18 (24243): wrapper (7.7.26015): starting
17:25:18 (24243): wrapper: running run_atlas (--nthreads 8)
[2026-03-01 17:25:18] Arguments: --nthreads 8
[2026-03-01 17:25:18] Threads: 8
[2026-03-01 17:25:18] Checking for CVMFS
[2026-03-01 17:25:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-01 17:25:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-01 17:25:20] Running cvmfs_config stat atlas.cern.ch
[2026-03-01 17:25:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-01 17:25:22] 2.11.2.0 18097 109091 133328 156776 0 55 21883760 25165824 899 130560 159 36415262 99.763 32873427 1064 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-01 17:25:22] CVMFS is ok
[2026-03-01 17:25:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-01 17:25:22] Checking for apptainer binary...
[2026-03-01 17:25:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-01 17:25:22] Running /usr/bin/apptainer --version
[2026-03-01 17:25:22] apptainer version 1.3.2-1.el7
[2026-03-01 17:25:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-01 17:25:33] cg-vwn387.simple-grid.lan
[2026-03-01 17:25:33] apptainer works
[2026-03-01 17:25:33] Set ATHENA_PROC_NUMBER=8
[2026-03-01 17:25:33] Set ATHENA_CORE_NUMBER=8
[2026-03-01 17:25:33] Starting ATLAS job with PandaID=7034261633
[2026-03-01 17:25:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-01 21:39:23]  *** The last 200 lines of the pilot log: ***
[2026-03-01 21:39:23] 2026-03-01 20:38:31,730 | INFO     | using path: /var/lib/boinc/slots/16/PanDA_Pilot-7034261633/memory_monitor_summary.json (trf name=prmon)
[2026-03-01 21:39:23] 2026-03-01 20:38:31,731 | INFO     | extracted standard info from prmon json
[2026-03-01 21:39:23] 2026-03-01 20:38:31,731 | INFO     | extracted standard memory fields from prmon json
[2026-03-01 21:39:23] 2026-03-01 20:38:31,734 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-01 21:39:23] 2026-03-01 20:38:31,735 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-01 21:39:23] 2026-03-01 20:38:31,735 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-01 21:39:23] 2026-03-01 20:38:31,740 | INFO     | fitting pss+swap vs Time
[2026-03-01 21:39:23] 2026-03-01 20:38:31,741 | INFO     | sum of square deviations: 4180243959.5
[2026-03-01 21:39:23] 2026-03-01 20:38:31,743 | INFO     | sum of deviations: 114598874636.0
[2026-03-01 21:39:23] 2026-03-01 20:38:31,743 | INFO     | mean x: 1772390238.5
[2026-03-01 21:39:23] 2026-03-01 20:38:31,743 | INFO     | mean y: 2422767.050420168
[2026-03-01 21:39:23] 2026-03-01 20:38:31,743 | INFO     | intersect: -48586589911.58428
[2026-03-01 21:39:23] 2026-03-01 20:38:31,744 | INFO     | chi2: 8.282861653642708
[2026-03-01 21:39:23] 2026-03-01 20:38:31,744 | INFO     | sum of square deviations: 3922276332.0
[2026-03-01 21:39:23] 2026-03-01 20:38:31,746 | INFO     | sum of deviations: 127711777334.00002
[2026-03-01 21:39:23] 2026-03-01 20:38:31,746 | INFO     | mean x: 1772390086.0
[2026-03-01 21:39:23] 2026-03-01 20:38:31,747 | INFO     | mean y: 2430359.9785407726
[2026-03-01 21:39:23] 2026-03-01 20:38:31,747 | INFO     | intersect: -57707702443.6429
[2026-03-01 21:39:23] 2026-03-01 20:38:31,747 | INFO     | chi2: 7.5857243117452695
[2026-03-01 21:39:23] 2026-03-01 20:38:31,747 | INFO     | current chi2=7.5857243117452695 (change=8.41662424230937 %)
[2026-03-01 21:39:23] 2026-03-01 20:38:31,747 | INFO     | right removable region: 232
[2026-03-01 21:39:23] 2026-03-01 20:38:31,748 | INFO     | sum of square deviations: 3922276332.0
[2026-03-01 21:39:23] 2026-03-01 20:38:31,750 | INFO     | sum of deviations: 32069540004.0
[2026-03-01 21:39:23] 2026-03-01 20:38:31,750 | INFO     | mean x: 1772390391.0
[2026-03-01 21:39:23] 2026-03-01 20:38:31,750 | INFO     | mean y: 2471523.957081545
[2026-03-01 21:39:23] 2026-03-01 20:38:31,750 | INFO     | intersect: -14489048128.330309
[2026-03-01 21:39:23] 2026-03-01 20:38:31,751 | INFO     | chi2: 3.2529738119886673
[2026-03-01 21:39:23] 2026-03-01 20:38:31,751 | INFO     | current chi2=3.2529738119886673 (change=60.7264500118984 %)
[2026-03-01 21:39:23] 2026-03-01 20:38:31,751 | INFO     | sum of square deviations: 3675146117.0
[2026-03-01 21:39:23] 2026-03-01 20:38:31,753 | INFO     | sum of deviations: -24830619343.5
[2026-03-01 21:39:23] 2026-03-01 20:38:31,754 | INFO     | mean x: 1772390543.5
[2026-03-01 21:39:23] 2026-03-01 20:38:31,754 | INFO     | mean y: 2506556.75
[2026-03-01 21:39:23] 2026-03-01 20:38:31,754 | INFO     | intersect: 11977419529.623121
[2026-03-01 21:39:23] 2026-03-01 20:38:31,754 | INFO     | chi2: 0.9712913596263237
[2026-03-01 21:39:23] 2026-03-01 20:38:31,754 | INFO     | current chi2=0.9712913596263237 (change=70.14143316965297 %)
[2026-03-01 21:39:23] 2026-03-01 20:38:31,755 | INFO     | sum of square deviations: 3438620752.0
[2026-03-01 21:39:23] 2026-03-01 20:38:31,757 | INFO     | sum of deviations: -31442367711.0
[2026-03-01 21:39:23] 2026-03-01 20:38:31,757 | INFO     | mean x: 1772390696.0
[2026-03-01 21:39:23] 2026-03-01 20:38:31,757 | INFO     | mean y: 2510764.64573991
[2026-03-01 21:39:23] 2026-03-01 20:38:31,757 | INFO     | intersect: 16209055193.476437
[2026-03-01 21:39:23] 2026-03-01 20:38:31,758 | INFO     | chi2: 0.8975875675483536
[2026-03-01 21:39:23] 2026-03-01 20:38:31,758 | INFO     | current chi2=0.8975875675483536 (change=7.5882268844979315 %)
[2026-03-01 21:39:23] 2026-03-01 20:38:31,758 | INFO     | left removable region: 30
[2026-03-01 21:39:23] 2026-03-01 20:38:31,758 | INFO     | sum of square deviations: 2555770710.5
[2026-03-01 21:39:23] 2026-03-01 20:38:31,760 | INFO     | sum of deviations: 4458997825.000001
[2026-03-01 21:39:23] 2026-03-01 20:38:31,760 | INFO     | mean x: 1772390970.5
[2026-03-01 21:39:23] 2026-03-01 20:38:31,760 | INFO     | mean y: 2505585.0594059406
[2026-03-01 21:39:23] 2026-03-01 20:38:31,760 | INFO     | intersect: -3089746568.0936503
[2026-03-01 21:39:23] 2026-03-01 20:38:31,761 | INFO     | chi2: 0.0005457855396242744
[2026-03-01 21:39:23] 2026-03-01 20:38:31,761 | INFO     | current memory leak: 1.74 B/s (using 202 data points, chi2=0.00)
[2026-03-01 21:39:23] 2026-03-01 20:38:31,762 | INFO     | could have reported an average CPU frequency of 1999 MHz (12 samples)
[2026-03-01 21:39:23] 2026-03-01 20:38:31,762 | INFO     | ..............................
[2026-03-01 21:39:23] 2026-03-01 20:38:31,762 | INFO     | . Timing measurements:
[2026-03-01 21:39:23] 2026-03-01 20:38:31,762 | INFO     | . get job = 0 s
[2026-03-01 21:39:23] 2026-03-01 20:38:31,762 | INFO     | . initial setup = 123 s
[2026-03-01 21:39:23] 2026-03-01 20:38:31,762 | INFO     | . payload setup = 155 s
[2026-03-01 21:39:23] 2026-03-01 20:38:31,762 | INFO     | . stage-in = 0 s
[2026-03-01 21:39:23] 2026-03-01 20:38:31,763 | INFO     | . payload execution = 14625 s
[2026-03-01 21:39:23] 2026-03-01 20:38:31,763 | INFO     | . stage-out = 4 s
[2026-03-01 21:39:23] 2026-03-01 20:38:31,763 | INFO     | . log creation = 1 s
[2026-03-01 21:39:23] 2026-03-01 20:38:31,763 | INFO     | ..............................
[2026-03-01 21:39:23] 2026-03-01 20:38:32,115 | INFO     | 
[2026-03-01 21:39:23] 2026-03-01 20:38:32,116 | INFO     | job summary report
[2026-03-01 21:39:23] 2026-03-01 20:38:32,116 | INFO     | --------------------------------------------------
[2026-03-01 21:39:23] 2026-03-01 20:38:32,116 | INFO     | PanDA job id: 7034261633
[2026-03-01 21:39:23] 2026-03-01 20:38:32,116 | INFO     | task id: 48843780
[2026-03-01 21:39:23] 2026-03-01 20:38:32,116 | INFO     | errors: (none)
[2026-03-01 21:39:23] 2026-03-01 20:38:32,116 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-01 21:39:23] 2026-03-01 20:38:32,116 | INFO     | pilot state: finished 
[2026-03-01 21:39:23] 2026-03-01 20:38:32,116 | INFO     | transexitcode: 0
[2026-03-01 21:39:23] 2026-03-01 20:38:32,116 | INFO     | exeerrorcode: 0
[2026-03-01 21:39:23] 2026-03-01 20:38:32,116 | INFO     | exeerrordiag: 
[2026-03-01 21:39:23] 2026-03-01 20:38:32,116 | INFO     | exitcode: 0
[2026-03-01 21:39:23] 2026-03-01 20:38:32,117 | INFO     | exitmsg: OK
[2026-03-01 21:39:23] 2026-03-01 20:38:32,117 | INFO     | cpuconsumptiontime: 54922 s
[2026-03-01 21:39:23] 2026-03-01 20:38:32,117 | INFO     | nevents: 400
[2026-03-01 21:39:23] 2026-03-01 20:38:32,117 | INFO     | neventsw: 0
[2026-03-01 21:39:23] 2026-03-01 20:38:32,117 | INFO     | pid: 32645
[2026-03-01 21:39:23] 2026-03-01 20:38:32,117 | INFO     | pgrp: 32645
[2026-03-01 21:39:23] 2026-03-01 20:38:32,117 | INFO     | corecount: 8
[2026-03-01 21:39:23] 2026-03-01 20:38:32,117 | INFO     | event service: False
[2026-03-01 21:39:23] 2026-03-01 20:38:32,117 | INFO     | sizes: {0: 2281239, 1: 2281925, 2: 2282386, 13: 2282386, 14786: 2313285, 14791: 2322469, 14793: 2322607}
[2026-03-01 21:39:23] 2026-03-01 20:38:32,117 | INFO     | --------------------------------------------------
[2026-03-01 21:39:23] 2026-03-01 20:38:32,117 | INFO     | 
[2026-03-01 21:39:23] 2026-03-01 20:38:32,118 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2026-03-01 21:39:23] 2026-03-01 20:38:32,267 | INFO     | time since job start (14807s) is within the limit (349056.0s)
[2026-03-01 21:39:23] 2026-03-01 20:38:32,567 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-01 21:39:23] 2026-03-01 20:38:32,567 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-01 21:39:23] 2026-03-01 20:38:32,567 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-01 21:39:23] 2026-03-01 20:38:32,567 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-01 21:39:23] 2026-03-01 20:38:32,567 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-01 21:39:23] 2026-03-01 20:38:32,567 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-01 21:39:23] 2026-03-01 20:38:32,568 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-01 21:39:23] 2026-03-01 20:38:32,568 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-01 21:39:23] 2026-03-01 20:38:32,568 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-01 21:39:23] 2026-03-01 20:38:32,568 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-01 21:39:23] 2026-03-01 20:38:32,568 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-01 21:39:23] 2026-03-01 20:38:32,568 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-01 21:39:23] 2026-03-01 20:38:32,568 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-01 21:39:23] 2026-03-01 20:38:32,568 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-01 21:39:23] 2026-03-01 20:38:32,568 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-01 21:39:23] 2026-03-01 20:38:32,569 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-01 21:39:23] 2026-03-01 20:38:32,569 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-01 21:39:23] 2026-03-01 20:38:32,569 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-01 21:39:23] 2026-03-01 20:38:32,569 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-01 21:39:23] 2026-03-01 20:38:32,569 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-01 21:39:23] 2026-03-01 20:38:32,569 | INFO     | job 7034261633 has completed (purged errors)
[2026-03-01 21:39:23] 2026-03-01 20:38:32,569 | INFO     | overall cleanup function is called
[2026-03-01 21:39:23] 2026-03-01 20:38:33,386 | INFO     | PID=28206 has CPU usage=8.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-01 21:39:23] 2026-03-01 20:38:33,386 | INFO     | .. there are 2 such processes running
[2026-03-01 21:39:23] 2026-03-01 20:38:33,577 | INFO     | --- collectZombieJob: --- 10, [32645]
[2026-03-01 21:39:23] 2026-03-01 20:38:33,578 | INFO     | zombie collector waiting for pid 32645
[2026-03-01 21:39:23] 2026-03-01 20:38:33,578 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-01 21:39:23] 2026-03-01 20:38:33,578 | INFO     | collected zombie processes
[2026-03-01 21:39:23] 2026-03-01 20:38:33,578 | INFO     | will attempt to kill all subprocesses of pid=32645
[2026-03-01 21:39:23] 2026-03-01 20:38:33,672 | INFO     | process IDs to be killed: [32645] (in reverse order)
[2026-03-01 21:39:23] 2026-03-01 20:38:34,674 | WARNING  | found no corresponding commands to process id(s)
[2026-03-01 21:39:23] 2026-03-01 20:38:34,674 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-01 21:39:23] 2026-03-01 20:38:34,676 | INFO     | did not find any defunct processes belonging to 32645
[2026-03-01 21:39:23] 2026-03-01 20:38:34,678 | INFO     | did not find any defunct processes belonging to 32645
[2026-03-01 21:39:23] 2026-03-01 20:38:34,678 | INFO     | ready for new job
[2026-03-01 21:39:23] 2026-03-01 20:38:34,679 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-01 21:39:23] 2026-03-01 20:38:34,681 | INFO     | **************************************
[2026-03-01 21:39:23] 2026-03-01 20:38:34,681 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-01 21:39:23] 2026-03-01 20:38:34,681 | INFO     | **************************************
[2026-03-01 21:39:23] 2026-03-01 20:38:34,681 | INFO     | 
[2026-03-01 21:39:23] 2026-03-01 20:38:34,682 | INFO     | pilot is running in a VM
[2026-03-01 21:39:23] 2026-03-01 20:38:34,682 | INFO     | architecture information:
[2026-03-01 21:39:23] 2026-03-01 20:38:34,685 | INFO     | executing command: cat /etc/os-release
[2026-03-01 21:39:23] 2026-03-01 20:38:34,962 | INFO     | cat /etc/os-release:
[2026-03-01 21:39:23] NAME="CentOS Linux"
[2026-03-01 21:39:23] VERSION="7 (Core)"
[2026-03-01 21:39:23] ID="centos"
[2026-03-01 21:39:23] ID_LIKE="rhel fedora"
[2026-03-01 21:39:23] VERSION_ID="7"
[2026-03-01 21:39:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-01 21:39:23] ANSI_COLOR="0;31"
[2026-03-01 21:39:23] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-01 21:39:23] HOME_URL="https://www.centos.org/"
[2026-03-01 21:39:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-01 21:39:23] 
[2026-03-01 21:39:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-01 21:39:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-01 21:39:23] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-01 21:39:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-01 21:39:23] 
[2026-03-01 21:39:23] 2026-03-01 20:38:34,962 | INFO     | **************************************
[2026-03-01 21:39:23] 2026-03-01 20:38:35,465 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2026-03-01 21:39:23] 2026-03-01 20:38:35,709 | INFO     | sufficient remaining disk space (497460183040 B)
[2026-03-01 21:39:23] 2026-03-01 20:38:35,709 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-01 21:39:23] 2026-03-01 20:38:35,710 | INFO     | current server update state: UPDATING_FINAL
[2026-03-01 21:39:23] 2026-03-01 20:38:35,710 | INFO     | update_server=False
[2026-03-01 21:39:23] 2026-03-01 20:38:35,710 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-01 21:39:23] 2026-03-01 20:38:35,710 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-01 21:39:23] 2026-03-01 20:38:35,718 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-01 21:39:23] 2026-03-01 20:38:35,850 | INFO     | all data control threads have been joined
[2026-03-01 21:39:23] 2026-03-01 20:38:35,888 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-01 21:39:23] 2026-03-01 20:38:35,889 | INFO     | aborting loop
[2026-03-01 21:39:23] 2026-03-01 20:38:36,493 | INFO     | all job control threads have been joined
[2026-03-01 21:39:23] 2026-03-01 20:38:36,550 | INFO     | all payload control threads have been joined
[2026-03-01 21:39:23] 2026-03-01 20:38:36,716 | INFO     | [job] retrieve thread has finished
[2026-03-01 21:39:23] 2026-03-01 20:38:36,804 | INFO     | [job] validate thread has finished
[2026-03-01 21:39:23] 2026-03-01 20:38:36,830 | INFO     | [payload] validate_post thread has finished
[2026-03-01 21:39:23] 2026-03-01 20:38:36,856 | INFO     | [data] control thread has finished
[2026-03-01 21:39:23] 2026-03-01 20:38:36,894 | INFO     | [job] job monitor thread has finished
[2026-03-01 21:39:23] 2026-03-01 20:38:36,906 | INFO     | [job] create_data_payload thread has finished
[2026-03-01 21:39:23] 2026-03-01 20:38:36,923 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-01 21:39:23] 2026-03-01 20:38:37,376 | INFO     | [payload] failed_post thread has finished
[2026-03-01 21:39:23] 2026-03-01 20:38:37,499 | INFO     | [job] control thread has finished
[2026-03-01 21:39:23] 2026-03-01 20:38:37,548 | INFO     | [payload] execute_payloads thread has finished
[2026-03-01 21:39:23] 2026-03-01 20:38:37,550 | INFO     | [data] copytool_in thread has finished
[2026-03-01 21:39:23] 2026-03-01 20:38:37,556 | INFO     | [payload] control thread has finished
[2026-03-01 21:39:23] 2026-03-01 20:38:37,717 | INFO     | [data] copytool_out thread has finished
[2026-03-01 21:39:23] 2026-03-01 20:38:37,808 | INFO     | [payload] validate_pre thread has finished
[2026-03-01 21:39:23] 2026-03-01 20:38:37,929 | INFO     | [job] queue monitor thread has finished
[2026-03-01 21:39:23] 2026-03-01 20:38:38,004 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-01 21:39:23] 2026-03-01 20:38:39,728 | INFO     | [data] queue_monitor thread has finished
[2026-03-01 21:39:23] 2026-03-01 20:39:05,489 | INFO     | PID=28206 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-01 21:39:23] 2026-03-01 20:39:05,489 | INFO     | .. there are 2 such processes running
[2026-03-01 21:39:23] 2026-03-01 20:39:05,494 | INFO     | found 0 job(s) in 20 queues
[2026-03-01 21:39:23] 2026-03-01 20:39:05,495 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-01 21:39:23] 2026-03-01 20:39:05,495 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-01 21:39:23] 2026-03-01 20:39:10,428 | INFO     | [monitor] cgroup control has ended
[2026-03-01 21:39:23] 2026-03-01 20:39:12,049 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139765990418240)>', '<ExcThread(monitor, started 139765399672576)>']
[2026-03-01 21:39:23] 2026-03-01 20:39:12,536 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-01 21:39:23] 2026-03-01 20:39:12,537 | INFO     | [monitor] control thread has ended
[2026-03-01 21:39:23] 2026-03-01 20:39:17,075 | INFO     | all workflow threads have been joined
[2026-03-01 21:39:23] 2026-03-01 20:39:17,076 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-01 21:39:23] 2026-03-01 20:39:17,076 | INFO     | traces error code: 0
[2026-03-01 21:39:23] 2026-03-01 20:39:17,076 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-01 21:39:23] 2026-03-01 20:39:17,602 [wrapper] ==== pilot stdout END ====
[2026-03-01 21:39:23] 2026-03-01 20:39:17,726 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-01 21:39:23] 2026-03-01 20:39:17,837 [wrapper] pilotpid: 28206
[2026-03-01 21:39:23] 2026-03-01 20:39:17,947 [wrapper] Pilot exit status: 0
[2026-03-01 21:39:23] 2026-03-01 20:39:18,406 [wrapper] pandaids: 7034261633
[2026-03-01 21:39:23] 2026-03-01 20:39:19,618 [wrapper] cleanup supervisor_pilot  6354 28207
[2026-03-01 21:39:23] 2026-03-01 20:39:19,727 [wrapper] Test setup, not cleaning
[2026-03-01 21:39:23] 2026-03-01 20:39:19,814 [wrapper] apfmon messages muted
[2026-03-01 21:39:23] 2026-03-01 20:39:19,900 [wrapper] ==== wrapper stdout END ====
[2026-03-01 21:39:23] 2026-03-01 20:39:20,007 [wrapper] ==== wrapper stderr END ====
[2026-03-01 21:39:23]  *** Error codes and diagnostics ***
[2026-03-01 21:39:23]     "exeErrorCode": 0,
[2026-03-01 21:39:23]     "exeErrorDiag": "",
[2026-03-01 21:39:23]     "pilotErrorCode": 0,
[2026-03-01 21:39:23]     "pilotErrorDiag": "",
[2026-03-01 21:39:23]  *** Listing of results directory ***
[2026-03-01 21:39:23] total 419112
[2026-03-01 21:39:23] -rw-r--r--. 1 boinc boinc    584627 Mar  1 03:30 pilot3.tar.gz
[2026-03-01 21:39:23] -rwx------. 1 boinc boinc     36322 Mar  1 03:32 runpilot2-wrapper.sh
[2026-03-01 21:39:23] -rw-r--r--. 1 boinc boinc      5111 Mar  1 03:33 queuedata.json
[2026-03-01 21:39:23] -rw-r--r--. 1 boinc boinc       100 Mar  1 17:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-01 21:39:23] -rwxr-xr-x. 1 boinc boinc      7986 Mar  1 17:25 run_atlas
[2026-03-01 21:39:23] -rw-r--r--. 1 boinc boinc       105 Mar  1 17:25 job.xml
[2026-03-01 21:39:23] -rw-r--r--. 1 boinc boinc      6392 Mar  1 17:25 init_data.xml
[2026-03-01 21:39:23] -rw-r--r--. 2 boinc boinc 251658128 Mar  1 17:25 EVNT.48451780._000001.pool.root.1
[2026-03-01 21:39:23] -rw-r--r--. 2 boinc boinc     15845 Mar  1 17:25 start_atlas.sh
[2026-03-01 21:39:23] drwxrwx--x. 2 boinc boinc        68 Mar  1 17:25 shared
[2026-03-01 21:39:23] -rw-r--r--. 2 boinc boinc    597954 Mar  1 17:25 input.tar.gz
[2026-03-01 21:39:23] -rw-r--r--. 1 boinc boinc         0 Mar  1 17:25 boinc_lockfile
[2026-03-01 21:39:23] -rw-r--r--. 1 boinc boinc      2606 Mar  1 17:25 pandaJob.out
[2026-03-01 21:39:23] -rw-------. 1 boinc boinc       415 Mar  1 17:31 workernode_map.json
[2026-03-01 21:39:23] -rw-------. 1 boinc boinc    998184 Mar  1 17:31 agis_schedconf.cvmfs.json
[2026-03-01 21:39:23] drwx------. 5 boinc boinc      4096 Mar  1 17:31 pilot3
[2026-03-01 21:39:23] -rw-------. 1 boinc boinc 168513450 Mar  1 21:37 HITS.48843780._000009.pool.root.1
[2026-03-01 21:39:23] -rw-r--r--. 1 boinc boinc       531 Mar  1 21:37 boinc_task_state.xml
[2026-03-01 21:39:23] -rw-------. 1 boinc boinc      1012 Mar  1 21:38 memory_monitor_summary.json
[2026-03-01 21:39:23] -rw-------. 1 boinc boinc   1513015 Mar  1 21:38 agis_ddmendpoints.agis.ALL.json
[2026-03-01 21:39:23] -rw-------. 1 boinc boinc    464333 Mar  1 21:38 log.48843780._000009.job.log.tgz.1
[2026-03-01 21:39:23] -rw-------. 1 boinc boinc      6302 Mar  1 21:38 heartbeat.json
[2026-03-01 21:39:23] -rw-------. 1 boinc boinc        95 Mar  1 21:39 pilot_heartbeat.json
[2026-03-01 21:39:23] -rw-------. 1 boinc boinc      4881 Mar  1 21:39 pilotlog.txt
[2026-03-01 21:39:23] -rw-r--r--. 1 boinc boinc      8192 Mar  1 21:39 boinc_mmap_file
[2026-03-01 21:39:23] -rw-r--r--. 1 boinc boinc        28 Mar  1 21:39 wrapper_checkpoint.txt
[2026-03-01 21:39:23] -rw-------. 1 boinc boinc   2081371 Mar  1 21:39 log.48843780._000009.job.log.1
[2026-03-01 21:39:23] -rw-------. 1 boinc boinc       357 Mar  1 21:39 output.list
[2026-03-01 21:39:23] -rw-r--r--. 1 boinc boinc       620 Mar  1 21:39 runtime_log
[2026-03-01 21:39:23] -rw-------. 1 boinc boinc   2560000 Mar  1 21:39 result.tar.gz
[2026-03-01 21:39:23] -rw-r--r--. 1 boinc boinc      8832 Mar  1 21:39 runtime_log.err
[2026-03-01 21:39:23] -rw-------. 1 boinc boinc       655 Mar  1 21:39 1m9LDmXmlG9n9Rq4apOajLDm4fhM0noT9bVooX4SDmYv6KDm3ag29n.diag
[2026-03-01 21:39:23] -rw-r--r--. 1 boinc boinc     20806 Mar  1 21:39 stderr.txt
[2026-03-01 21:39:23] HITS file was successfully produced:
[2026-03-01 21:39:23] -rw-------. 1 boinc boinc 168513450 Mar  1 21:37 shared/HITS.pool.root.1
[2026-03-01 21:39:23]  *** Contents of shared directory: ***
[2026-03-01 21:39:23] total 413424
[2026-03-01 21:39:23] -rw-r--r--. 2 boinc boinc 251658128 Mar  1 17:25 ATLAS.root_0
[2026-03-01 21:39:23] -rw-r--r--. 2 boinc boinc     15845 Mar  1 17:25 start_atlas.sh
[2026-03-01 21:39:23] -rw-r--r--. 2 boinc boinc    597954 Mar  1 17:25 input.tar.gz
[2026-03-01 21:39:23] -rw-------. 1 boinc boinc 168513450 Mar  1 21:37 HITS.pool.root.1
[2026-03-01 21:39:23] -rw-------. 1 boinc boinc   2560000 Mar  1 21:39 result.tar.gz
21:39:24 (24243): run_atlas exited; CPU time 55083.966843
21:39:24 (24243): called boinc_finish(0)

</stderr_txt>
]]>

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