Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:29:29 (3132574): wrapper (7.7.26015): starting
17:29:29 (3132574): wrapper: running run_atlas (--nthreads 3)
[2026-03-01 17:29:29] Arguments: --nthreads 3
[2026-03-01 17:29:29] Threads: 3
[2026-03-01 17:29:29] Checking for CVMFS
[2026-03-01 17:29:29] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-01 17:29:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-01 17:29:30] Running cvmfs_config stat atlas.cern.ch
[2026-03-01 17:29:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-01 17:29:30] 2.9.2.0 2730021 3329 82520 156776 1 49 29774364 36864000 0 130560 0 1129154 99.981 123722 10825 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-01 17:29:30] CVMFS is ok
[2026-03-01 17:29:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-01 17:29:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-01 17:29:30] Further information can be found at the LHC@home message board.
[2026-03-01 17:29:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-01 17:29:30] Checking for apptainer binary...
[2026-03-01 17:29:30] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-01 17:29:30] Running /usr/bin/apptainer --version
[2026-03-01 17:29:30] apptainer version 1.4.1-1.1
[2026-03-01 17:29:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-01 17:29:30] thA349
[2026-03-01 17:29:30] apptainer works
[2026-03-01 17:29:30] Set ATHENA_PROC_NUMBER=3
[2026-03-01 17:29:30] Set ATHENA_CORE_NUMBER=3
[2026-03-01 17:29:30] Starting ATLAS job with PandaID=7033895562
[2026-03-01 17:29:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-01 19:31:53]  *** The last 200 lines of the pilot log: ***
[2026-03-01 19:31:53] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-01 19:31:53] HOME_URL="https://www.centos.org/"
[2026-03-01 19:31:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-01 19:31:53] 
[2026-03-01 19:31:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-01 19:31:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-01 19:31:53] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-01 19:31:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-01 19:31:53] 
[2026-03-01 19:31:53] 2026-03-01 18:31:12,699 | INFO     | **************************************
[2026-03-01 19:31:53] 2026-03-01 18:31:12,785 | WARNING  | process 3141034 can no longer be monitored (due to stat problems) - aborting
[2026-03-01 19:31:53] 2026-03-01 18:31:12,814 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-01 19:31:53] 2026-03-01 18:31:12,849 | INFO     | number of running child processes to parent process 3141034: 1
[2026-03-01 19:31:53] 2026-03-01 18:31:12,849 | INFO     | maximum number of monitored processes: 6
[2026-03-01 19:31:53] 2026-03-01 18:31:12,849 | INFO     | aborting job monitoring since job object (job id=7033895562) has expired
[2026-03-01 19:31:53] 2026-03-01 18:31:13,203 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-01 19:31:53] 2026-03-01 18:31:13,215 | INFO     | sufficient remaining disk space (274274975744 B)
[2026-03-01 19:31:53] 2026-03-01 18:31:13,215 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-01 19:31:53] 2026-03-01 18:31:13,215 | INFO     | current server update state: UPDATING_FINAL
[2026-03-01 19:31:53] 2026-03-01 18:31:13,215 | INFO     | update_server=False
[2026-03-01 19:31:53] 2026-03-01 18:31:13,215 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-01 19:31:53] 2026-03-01 18:31:13,215 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-01 19:31:53] 2026-03-01 18:31:13,215 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-01 19:31:53] 2026-03-01 18:31:13,215 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-01 19:31:53] 2026-03-01 18:31:13,216 | INFO     | will abort loop
[2026-03-01 19:31:53] 2026-03-01 18:31:13,516 | INFO     | all payload control threads have been joined
[2026-03-01 19:31:53] 2026-03-01 18:31:13,950 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-01 19:31:53] 2026-03-01 18:31:14,031 | INFO     | job.realtimelogging is not enabled
[2026-03-01 19:31:53] 2026-03-01 18:31:14,221 | INFO     | [job] retrieve thread has finished
[2026-03-01 19:31:53] 2026-03-01 18:31:14,221 | INFO     | [job] queue monitor thread has finished
[2026-03-01 19:31:53] 2026-03-01 18:31:14,221 | INFO     | [job] job monitor thread has finished
[2026-03-01 19:31:53] 2026-03-01 18:31:14,223 | INFO     | [data] copytool_in thread has finished
[2026-03-01 19:31:53] 2026-03-01 18:31:14,314 | INFO     | all data control threads have been joined
[2026-03-01 19:31:53] 2026-03-01 18:31:14,522 | INFO     | [payload] control thread has finished
[2026-03-01 19:31:53] 2026-03-01 18:31:14,912 | INFO     | [payload] execute_payloads thread has finished
[2026-03-01 19:31:53] 2026-03-01 18:31:14,913 | INFO     | all job control threads have been joined
[2026-03-01 19:31:53] 2026-03-01 18:31:15,037 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-01 19:31:53] 2026-03-01 18:31:15,237 | INFO     | [payload] validate_post thread has finished
[2026-03-01 19:31:53] 2026-03-01 18:31:15,320 | INFO     | [data] control thread has finished
[2026-03-01 19:31:53] 2026-03-01 18:31:15,505 | INFO     | [job] validate thread has finished
[2026-03-01 19:31:53] 2026-03-01 18:31:15,544 | INFO     | [job] create_data_payload thread has finished
[2026-03-01 19:31:53] 2026-03-01 18:31:15,556 | INFO     | [payload] failed_post thread has finished
[2026-03-01 19:31:53] 2026-03-01 18:31:15,584 | INFO     | [payload] validate_pre thread has finished
[2026-03-01 19:31:53] 2026-03-01 18:31:15,919 | INFO     | [job] control thread has finished
[2026-03-01 19:31:53] 2026-03-01 18:31:15,956 | INFO     | [data] copytool_out thread has finished
[2026-03-01 19:31:53] 2026-03-01 18:31:17,223 | INFO     | [data] queue_monitor thread has finished
[2026-03-01 19:31:53] 2026-03-01 18:31:43,759 | INFO     | PID=3136613 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-01 19:31:53] 2026-03-01 18:31:43,759 | INFO     | found 0 job(s) in 20 queues
[2026-03-01 19:31:53] 2026-03-01 18:31:43,759 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-01 19:31:53] 2026-03-01 18:31:43,759 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-01 19:31:53] 2026-03-01 18:31:47,711 | INFO     | [monitor] cgroup control has ended
[2026-03-01 19:31:53] 2026-03-01 18:31:48,340 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139950886389568)>', '<ExcThread(monitor, started 139950402025216)>']
[2026-03-01 19:31:53] 2026-03-01 18:31:48,786 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-01 19:31:53] 2026-03-01 18:31:48,786 | INFO     | [monitor] control thread has ended
[2026-03-01 19:31:53] 2026-03-01 18:31:53,343 | INFO     | all workflow threads have been joined
[2026-03-01 19:31:53] 2026-03-01 18:31:53,343 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-01 19:31:53] 2026-03-01 18:31:53,343 | INFO     | traces error code: 0
[2026-03-01 19:31:53] 2026-03-01 18:31:53,343 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-01 19:31:53] 2026-03-01 18:31:53,393 [wrapper] ==== pilot stdout END ====
[2026-03-01 19:31:53] 2026-03-01 18:31:53,395 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-01 19:31:53] 2026-03-01 18:31:53,398 [wrapper] pilotpid: 3136613
[2026-03-01 19:31:53] 2026-03-01 18:31:53,400 [wrapper] Pilot exit status: 0
[2026-03-01 19:31:53] 2026-03-01 18:31:53,407 [wrapper] pandaids: 7033895562
[2026-03-01 19:31:53] 2026-03-01 18:31:53,422 [wrapper] cleanup supervisor_pilot 3147209 3136614
[2026-03-01 19:31:53] 2026-03-01 18:31:53,425 [wrapper] Test setup, not cleaning
[2026-03-01 19:31:53] 2026-03-01 18:31:53,427 [wrapper] apfmon messages muted
[2026-03-01 19:31:53] 2026-03-01 18:31:53,429 [wrapper] ==== wrapper stdout END ====
[2026-03-01 19:31:53] 2026-03-01 18:31:53,432 [wrapper] ==== wrapper stderr END ====
[2026-03-01 19:31:53]  *** Error codes and diagnostics ***
[2026-03-01 19:31:53]     "exeErrorCode": 0,
[2026-03-01 19:31:53]     "exeErrorDiag": "",
[2026-03-01 19:31:53]     "pilotErrorCode": 0,
[2026-03-01 19:31:53]     "pilotErrorDiag": "",
[2026-03-01 19:31:53]  *** Listing of results directory ***
[2026-03-01 19:31:53] total 472952
[2026-03-01 19:31:53] -rw-r--r-- 1 boinc boinc    584627 Feb 28 21:24 pilot3.tar.gz
[2026-03-01 19:31:53] -rwx------ 1 boinc boinc     36322 Feb 28 21:26 runpilot2-wrapper.sh
[2026-03-01 19:31:53] -rw-r--r-- 1 boinc boinc      5111 Feb 28 21:27 queuedata.json
[2026-03-01 19:31:53] -rw-r--r-- 1 boinc boinc       100 Mar  1 17:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-01 19:31:53] -rwxr-xr-x 1 boinc boinc      7986 Mar  1 17:29 run_atlas
[2026-03-01 19:31:53] -rw-r--r-- 1 boinc boinc       105 Mar  1 17:29 job.xml
[2026-03-01 19:31:53] -rw-r--r-- 2 boinc boinc 257847595 Mar  1 17:29 EVNT.48453562._000001.pool.root.1
[2026-03-01 19:31:53] -rw-r--r-- 2 boinc boinc    597983 Mar  1 17:29 input.tar.gz
[2026-03-01 19:31:53] -rw-r--r-- 2 boinc boinc     15845 Mar  1 17:29 start_atlas.sh
[2026-03-01 19:31:53] drwxrwx--x 2 boinc boinc      4096 Mar  1 17:29 shared
[2026-03-01 19:31:53] -rw-r--r-- 1 boinc boinc         0 Mar  1 17:29 boinc_setup_complete
[2026-03-01 19:31:53] -rw-r--r-- 1 boinc boinc      6445 Mar  1 17:29 init_data.xml
[2026-03-01 19:31:53] -rw-r--r-- 1 boinc boinc         0 Mar  1 17:29 boinc_lockfile
[2026-03-01 19:31:53] -rw-r--r-- 1 boinc boinc      2644 Mar  1 17:29 pandaJob.out
[2026-03-01 19:31:53] -rw------- 1 boinc boinc    998184 Mar  1 17:29 agis_schedconf.cvmfs.json
[2026-03-01 19:31:53] -rw------- 1 boinc boinc   1513015 Mar  1 17:29 agis_ddmendpoints.agis.ALL.json
[2026-03-01 19:31:53] -rw------- 1 boinc boinc       423 Mar  1 17:29 workernode_map.json
[2026-03-01 19:31:53] drwx------ 5 boinc boinc      4096 Mar  1 17:29 pilot3
[2026-03-01 19:31:53] -rw------- 1 boinc boinc 219844157 Mar  1 19:30 HITS.48844547._000021.pool.root.1
[2026-03-01 19:31:53] -rw-r--r-- 1 boinc boinc       529 Mar  1 19:30 boinc_task_state.xml
[2026-03-01 19:31:53] -rw------- 1 boinc boinc      1014 Mar  1 19:31 memory_monitor_summary.json
[2026-03-01 19:31:53] -rw------- 1 boinc boinc    296373 Mar  1 19:31 log.48844547._000021.job.log.tgz.1
[2026-03-01 19:31:53] -rw------- 1 boinc boinc      6284 Mar  1 19:31 heartbeat.json
[2026-03-01 19:31:53] -rw------- 1 boinc boinc        95 Mar  1 19:31 pilot_heartbeat.json
[2026-03-01 19:31:53] -rw-r--r-- 1 boinc boinc      8192 Mar  1 19:31 boinc_mmap_file
[2026-03-01 19:31:53] -rw-r--r-- 1 boinc boinc        27 Mar  1 19:31 wrapper_checkpoint.txt
[2026-03-01 19:31:53] -rw------- 1 boinc boinc      5344 Mar  1 19:31 pilotlog.txt
[2026-03-01 19:31:53] -rw------- 1 boinc boinc   1050220 Mar  1 19:31 log.48844547._000021.job.log.1
[2026-03-01 19:31:53] -rw------- 1 boinc boinc       357 Mar  1 19:31 output.list
[2026-03-01 19:31:53] -rw-r--r-- 1 boinc boinc       620 Mar  1 19:31 runtime_log
[2026-03-01 19:31:53] -rw------- 1 boinc boinc   1361920 Mar  1 19:31 result.tar.gz
[2026-03-01 19:31:53] -rw-r--r-- 1 boinc boinc      8896 Mar  1 19:31 runtime_log.err
[2026-03-01 19:31:53] -rw------- 1 boinc boinc       657 Mar  1 19:31 5VnLDmC4fG9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm087KDmmQxMsm.diag
[2026-03-01 19:31:53] -rw-r--r-- 1 boinc boinc      9139 Mar  1 19:31 stderr.txt
[2026-03-01 19:31:53] HITS file was successfully produced:
[2026-03-01 19:31:53] -rw------- 1 boinc boinc 219844157 Mar  1 19:30 shared/HITS.pool.root.1
[2026-03-01 19:31:53]  *** Contents of shared directory: ***
[2026-03-01 19:31:53] total 468440
[2026-03-01 19:31:53] -rw-r--r-- 2 boinc boinc 257847595 Mar  1 17:29 ATLAS.root_0
[2026-03-01 19:31:53] -rw-r--r-- 2 boinc boinc    597983 Mar  1 17:29 input.tar.gz
[2026-03-01 19:31:53] -rw-r--r-- 2 boinc boinc     15845 Mar  1 17:29 start_atlas.sh
[2026-03-01 19:31:53] -rw------- 1 boinc boinc 219844157 Mar  1 19:30 HITS.pool.root.1
[2026-03-01 19:31:53] -rw------- 1 boinc boinc   1361920 Mar  1 19:31 result.tar.gz
19:31:54 (3132574): run_atlas exited; CPU time 21202.477534
19:31:54 (3132574): called boinc_finish(0)

</stderr_txt>
]]>

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