Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:58:09 (773754): wrapper (7.7.26015): starting
16:58:09 (773754): wrapper: running run_atlas (--nthreads 3)
[2026-03-01 16:58:09] Arguments: --nthreads 3
[2026-03-01 16:58:09] Threads: 3
[2026-03-01 16:58:09] Checking for CVMFS
[2026-03-01 16:58:09] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-01 16:58:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-01 16:58:09] Running cvmfs_config stat atlas.cern.ch
[2026-03-01 16:58:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-01 16:58:09] 2.9.2.0 82037 5724 67824 156774 1 50 20535175 36864001 0 130560 0 1944524 99.979 224542 17464 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-01 16:58:09] CVMFS is ok
[2026-03-01 16:58:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-01 16:58:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-01 16:58:09] Further information can be found at the LHC@home message board.
[2026-03-01 16:58:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-01 16:58:09] Checking for apptainer binary...
[2026-03-01 16:58:09] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-01 16:58:09] Running /usr/bin/apptainer --version
[2026-03-01 16:58:09] apptainer version 1.4.1-1.1
[2026-03-01 16:58:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-01 16:58:10] magicA244b
[2026-03-01 16:58:10] apptainer works
[2026-03-01 16:58:10] Set ATHENA_PROC_NUMBER=3
[2026-03-01 16:58:10] Set ATHENA_CORE_NUMBER=3
[2026-03-01 16:58:10] Starting ATLAS job with PandaID=7033895226
[2026-03-01 16:58:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-01 19:15:41]  *** The last 200 lines of the pilot log: ***
[2026-03-01 19:15:41] 2026-03-01 18:14:44,547 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-01 19:15:41] 2026-03-01 18:14:44,547 | INFO     | job 7033895226 has completed (purged errors)
[2026-03-01 19:15:41] 2026-03-01 18:14:44,548 | INFO     | overall cleanup function is called
[2026-03-01 19:15:41] 2026-03-01 18:14:45,556 | INFO     | --- collectZombieJob: --- 10, [782239]
[2026-03-01 19:15:41] 2026-03-01 18:14:45,557 | INFO     | zombie collector waiting for pid 782239
[2026-03-01 19:15:41] 2026-03-01 18:14:45,557 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-01 19:15:41] 2026-03-01 18:14:45,557 | INFO     | collected zombie processes
[2026-03-01 19:15:41] 2026-03-01 18:14:45,557 | INFO     | will attempt to kill all subprocesses of pid=782239
[2026-03-01 19:15:41] 2026-03-01 18:14:45,593 | INFO     | process IDs to be killed: [782239] (in reverse order)
[2026-03-01 19:15:41] 2026-03-01 18:14:45,619 | WARNING  | found no corresponding commands to process id(s)
[2026-03-01 19:15:41] 2026-03-01 18:14:45,619 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-01 19:15:41] 2026-03-01 18:14:45,620 | INFO     | did not find any defunct processes belonging to 782239
[2026-03-01 19:15:41] 2026-03-01 18:14:45,621 | INFO     | did not find any defunct processes belonging to 782239
[2026-03-01 19:15:41] 2026-03-01 18:14:45,621 | INFO     | ready for new job
[2026-03-01 19:15:41] 2026-03-01 18:14:45,621 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-01 19:15:41] 2026-03-01 18:14:45,622 | INFO     | **************************************
[2026-03-01 19:15:41] 2026-03-01 18:14:45,622 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-01 19:15:41] 2026-03-01 18:14:45,622 | INFO     | **************************************
[2026-03-01 19:15:41] 2026-03-01 18:14:45,622 | INFO     | 
[2026-03-01 19:15:41] 2026-03-01 18:14:45,622 | INFO     | architecture information:
[2026-03-01 19:15:41] 2026-03-01 18:14:45,623 | INFO     | executing command: cat /etc/os-release
[2026-03-01 19:15:41] 2026-03-01 18:14:45,632 | INFO     | cat /etc/os-release:
[2026-03-01 19:15:41] NAME="CentOS Linux"
[2026-03-01 19:15:41] VERSION="7 (Core)"
[2026-03-01 19:15:41] ID="centos"
[2026-03-01 19:15:41] ID_LIKE="rhel fedora"
[2026-03-01 19:15:41] VERSION_ID="7"
[2026-03-01 19:15:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-01 19:15:41] ANSI_COLOR="0;31"
[2026-03-01 19:15:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-01 19:15:41] HOME_URL="https://www.centos.org/"
[2026-03-01 19:15:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-01 19:15:41] 
[2026-03-01 19:15:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-01 19:15:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-01 19:15:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-01 19:15:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-01 19:15:41] 
[2026-03-01 19:15:41] 2026-03-01 18:14:45,632 | INFO     | **************************************
[2026-03-01 19:15:41] 2026-03-01 18:14:46,135 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-01 19:15:41] 2026-03-01 18:14:46,149 | INFO     | sufficient remaining disk space (339540443136 B)
[2026-03-01 19:15:41] 2026-03-01 18:14:46,149 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-01 19:15:41] 2026-03-01 18:14:46,149 | INFO     | current server update state: UPDATING_FINAL
[2026-03-01 19:15:41] 2026-03-01 18:14:46,149 | INFO     | update_server=False
[2026-03-01 19:15:41] 2026-03-01 18:14:46,149 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-01 19:15:41] 2026-03-01 18:14:46,150 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-01 19:15:41] 2026-03-01 18:14:46,374 | INFO     | all job control threads have been joined
[2026-03-01 19:15:41] 2026-03-01 18:14:46,538 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-01 19:15:41] 2026-03-01 18:14:46,898 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-01 19:15:41] 2026-03-01 18:14:46,899 | INFO     | aborting loop
[2026-03-01 19:15:41] 2026-03-01 18:14:46,952 | INFO     | all payload control threads have been joined
[2026-03-01 19:15:41] 2026-03-01 18:14:46,963 | INFO     | all data control threads have been joined
[2026-03-01 19:15:41] 2026-03-01 18:14:47,155 | INFO     | [job] queue monitor thread has finished
[2026-03-01 19:15:41] 2026-03-01 18:14:47,156 | INFO     | [job] retrieve thread has finished
[2026-03-01 19:15:41] 2026-03-01 18:14:47,162 | INFO     | [data] copytool_in thread has finished
[2026-03-01 19:15:41] 2026-03-01 18:14:47,239 | INFO     | [payload] validate_pre thread has finished
[2026-03-01 19:15:41] 2026-03-01 18:14:47,380 | INFO     | [job] control thread has finished
[2026-03-01 19:15:41] 2026-03-01 18:14:47,613 | INFO     | [payload] failed_post thread has finished
[2026-03-01 19:15:41] 2026-03-01 18:14:47,625 | INFO     | [payload] execute_payloads thread has finished
[2026-03-01 19:15:41] 2026-03-01 18:14:47,905 | INFO     | [job] job monitor thread has finished
[2026-03-01 19:15:41] 2026-03-01 18:14:47,958 | INFO     | [payload] control thread has finished
[2026-03-01 19:15:41] 2026-03-01 18:14:47,969 | INFO     | [data] control thread has finished
[2026-03-01 19:15:41] 2026-03-01 18:14:48,135 | INFO     | [payload] validate_post thread has finished
[2026-03-01 19:15:41] 2026-03-01 18:14:48,366 | INFO     | [job] create_data_payload thread has finished
[2026-03-01 19:15:41] 2026-03-01 18:14:48,544 | INFO     | [data] copytool_out thread has finished
[2026-03-01 19:15:41] 2026-03-01 18:14:48,576 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-01 19:15:41] 2026-03-01 18:14:48,628 | INFO     | [job] validate thread has finished
[2026-03-01 19:15:41] 2026-03-01 18:14:52,583 | INFO     | [data] queue_monitor thread has finished
[2026-03-01 19:15:41] 2026-03-01 18:14:56,687 | INFO     | job.realtimelogging is not enabled
[2026-03-01 19:15:41] 2026-03-01 18:14:57,693 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-01 19:15:41] 2026-03-01 18:15:16,911 | INFO     | PID=777812 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-01 19:15:41] 2026-03-01 18:15:16,911 | INFO     | found 0 job(s) in 20 queues
[2026-03-01 19:15:41] 2026-03-01 18:15:16,911 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-01 19:15:41] 2026-03-01 18:15:16,911 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-01 19:15:41] 2026-03-01 18:15:36,099 | INFO     | [monitor] cgroup control has ended
[2026-03-01 19:15:41] 2026-03-01 18:15:36,557 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139831688972096)>', '<ExcThread(monitor, started 139830948247296)>']
[2026-03-01 19:15:41] 2026-03-01 18:15:37,017 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-01 19:15:41] 2026-03-01 18:15:37,018 | INFO     | [monitor] control thread has ended
[2026-03-01 19:15:41] 2026-03-01 18:15:41,583 | INFO     | all workflow threads have been joined
[2026-03-01 19:15:41] 2026-03-01 18:15:41,583 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-01 19:15:41] 2026-03-01 18:15:41,584 | INFO     | traces error code: 0
[2026-03-01 19:15:41] 2026-03-01 18:15:41,584 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-01 19:15:41] 2026-03-01 18:15:41,633 [wrapper] ==== pilot stdout END ====
[2026-03-01 19:15:41] 2026-03-01 18:15:41,636 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-01 19:15:41] 2026-03-01 18:15:41,639 [wrapper] pilotpid: 777812
[2026-03-01 19:15:41] 2026-03-01 18:15:41,642 [wrapper] Pilot exit status: 0
[2026-03-01 19:15:41] 2026-03-01 18:15:41,649 [wrapper] pandaids: 7033895226
[2026-03-01 19:15:41] 2026-03-01 18:15:41,666 [wrapper] cleanup supervisor_pilot  788296 777813
[2026-03-01 19:15:41] 2026-03-01 18:15:41,669 [wrapper] Test setup, not cleaning
[2026-03-01 19:15:41] 2026-03-01 18:15:41,671 [wrapper] apfmon messages muted
[2026-03-01 19:15:41] 2026-03-01 18:15:41,674 [wrapper] ==== wrapper stdout END ====
[2026-03-01 19:15:41] 2026-03-01 18:15:41,676 [wrapper] ==== wrapper stderr END ====
[2026-03-01 19:15:41]  *** Error codes and diagnostics ***
[2026-03-01 19:15:41]     "exeErrorCode": 0,
[2026-03-01 19:15:41]     "exeErrorDiag": "",
[2026-03-01 19:15:41]     "pilotErrorCode": 0,
[2026-03-01 19:15:41]     "pilotErrorDiag": "",
[2026-03-01 19:15:41]  *** Listing of results directory ***
[2026-03-01 19:15:41] total 433240
[2026-03-01 19:15:41] -rwx------ 1 boinc boinc     36322 Feb 28 21:23 runpilot2-wrapper.sh
[2026-03-01 19:15:41] -rw-r--r-- 1 boinc boinc      5111 Feb 28 21:24 queuedata.json
[2026-03-01 19:15:41] -rw-r--r-- 1 boinc boinc    584627 Feb 28 21:24 pilot3.tar.gz
[2026-03-01 19:15:41] -rw-r--r-- 1 boinc boinc       100 Mar  1 16:58 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-01 19:15:41] -rwxr-xr-x 1 boinc boinc      7986 Mar  1 16:58 run_atlas
[2026-03-01 19:15:41] -rw-r--r-- 1 boinc boinc       105 Mar  1 16:58 job.xml
[2026-03-01 19:15:41] -rw-r--r-- 2 boinc boinc 237249586 Mar  1 16:58 EVNT.48453417._000001.pool.root.1
[2026-03-01 19:15:41] -rw-r--r-- 2 boinc boinc    597946 Mar  1 16:58 input.tar.gz
[2026-03-01 19:15:41] -rw-r--r-- 2 boinc boinc     15845 Mar  1 16:58 start_atlas.sh
[2026-03-01 19:15:41] drwxrwx--x 2 boinc boinc      4096 Mar  1 16:58 shared
[2026-03-01 19:15:41] -rw-r--r-- 1 boinc boinc         0 Mar  1 16:58 boinc_setup_complete
[2026-03-01 19:15:41] -rw-r--r-- 1 boinc boinc      6199 Mar  1 16:58 init_data.xml
[2026-03-01 19:15:41] -rw-r--r-- 1 boinc boinc         0 Mar  1 16:58 boinc_lockfile
[2026-03-01 19:15:41] -rw-r--r-- 1 boinc boinc      2607 Mar  1 16:58 pandaJob.out
[2026-03-01 19:15:41] -rw------- 1 boinc boinc    998184 Mar  1 16:58 agis_schedconf.cvmfs.json
[2026-03-01 19:15:41] -rw------- 1 boinc boinc   1513015 Mar  1 16:58 agis_ddmendpoints.agis.ALL.json
[2026-03-01 19:15:41] -rw------- 1 boinc boinc       423 Mar  1 16:58 workernode_map.json
[2026-03-01 19:15:41] drwx------ 5 boinc boinc      4096 Mar  1 16:58 pilot3
[2026-03-01 19:15:41] -rw------- 1 boinc boinc 199566461 Mar  1 19:14 HITS.48844491._000001.pool.root.1
[2026-03-01 19:15:41] -rw-r--r-- 1 boinc boinc       529 Mar  1 19:14 boinc_task_state.xml
[2026-03-01 19:15:41] -rw------- 1 boinc boinc      1014 Mar  1 19:14 memory_monitor_summary.json
[2026-03-01 19:15:41] -rw------- 1 boinc boinc    285340 Mar  1 19:14 log.48844491._000001.job.log.tgz.1
[2026-03-01 19:15:41] -rw------- 1 boinc boinc      6287 Mar  1 19:14 heartbeat.json
[2026-03-01 19:15:41] -rw------- 1 boinc boinc        95 Mar  1 19:15 pilot_heartbeat.json
[2026-03-01 19:15:41] -rw-r--r-- 1 boinc boinc      8192 Mar  1 19:15 boinc_mmap_file
[2026-03-01 19:15:41] -rw-r--r-- 1 boinc boinc        27 Mar  1 19:15 wrapper_checkpoint.txt
[2026-03-01 19:15:41] -rw------- 1 boinc boinc      4819 Mar  1 19:15 pilotlog.txt
[2026-03-01 19:15:41] -rw------- 1 boinc boinc   1171208 Mar  1 19:15 log.48844491._000001.job.log.1
[2026-03-01 19:15:41] -rw------- 1 boinc boinc       357 Mar  1 19:15 output.list
[2026-03-01 19:15:41] -rw-r--r-- 1 boinc boinc       620 Mar  1 19:15 runtime_log
[2026-03-01 19:15:41] -rw------- 1 boinc boinc   1474560 Mar  1 19:15 result.tar.gz
[2026-03-01 19:15:41] -rw-r--r-- 1 boinc boinc      8916 Mar  1 19:15 runtime_log.err
[2026-03-01 19:15:41] -rw------- 1 boinc boinc       661 Mar  1 19:15 H5eNDmO1fG9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmj17KDmpqicin.diag
[2026-03-01 19:15:41] -rw-r--r-- 1 boinc boinc     10991 Mar  1 19:15 stderr.txt
[2026-03-01 19:15:41] HITS file was successfully produced:
[2026-03-01 19:15:41] -rw------- 1 boinc boinc 199566461 Mar  1 19:14 shared/HITS.pool.root.1
[2026-03-01 19:15:41]  *** Contents of shared directory: ***
[2026-03-01 19:15:41] total 428628
[2026-03-01 19:15:41] -rw-r--r-- 2 boinc boinc 237249586 Mar  1 16:58 ATLAS.root_0
[2026-03-01 19:15:41] -rw-r--r-- 2 boinc boinc    597946 Mar  1 16:58 input.tar.gz
[2026-03-01 19:15:41] -rw-r--r-- 2 boinc boinc     15845 Mar  1 16:58 start_atlas.sh
[2026-03-01 19:15:41] -rw------- 1 boinc boinc 199566461 Mar  1 19:14 HITS.pool.root.1
[2026-03-01 19:15:41] -rw------- 1 boinc boinc   1474560 Mar  1 19:15 result.tar.gz
19:15:43 (773754): run_atlas exited; CPU time 23749.849695
19:15:43 (773754): called boinc_finish(0)

</stderr_txt>
]]>

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