Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:40:28 (604170): wrapper (7.7.26015): starting
18:40:28 (604170): wrapper: running run_atlas (--nthreads 3)
[2026-03-01 18:40:28] Arguments: --nthreads 3
[2026-03-01 18:40:28] Threads: 3
[2026-03-01 18:40:28] Checking for CVMFS
[2026-03-01 18:40:29] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-01 18:40:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-01 18:40:30] Running cvmfs_config stat atlas.cern.ch
[2026-03-01 18:40:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-01 18:40:30] 2.9.2.0 2903 4367 80556 156778 3 50 27306238 36864000 0 130560 0 1690312 99.974 304715 3433 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-01 18:40:30] CVMFS is ok
[2026-03-01 18:40:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-01 18:40:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-01 18:40:30] Further information can be found at the LHC@home message board.
[2026-03-01 18:40:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-01 18:40:30] Checking for apptainer binary...
[2026-03-01 18:40:30] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-01 18:40:30] Running /usr/bin/apptainer --version
[2026-03-01 18:40:30] apptainer version 1.4.1-1.1
[2026-03-01 18:40:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-01 18:40:30] belleA253
[2026-03-01 18:40:30] apptainer works
[2026-03-01 18:40:30] Set ATHENA_PROC_NUMBER=3
[2026-03-01 18:40:30] Set ATHENA_CORE_NUMBER=3
[2026-03-01 18:40:30] Starting ATLAS job with PandaID=7033996586
[2026-03-01 18:40:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-01 20:21:54]  *** The last 200 lines of the pilot log: ***
[2026-03-01 20:21:54] 2026-03-01 19:21:30,560 | INFO     | 
[2026-03-01 20:21:54] 2026-03-01 19:21:30,560 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2026-03-01 20:21:54] 2026-03-01 19:21:30,573 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-01 20:21:54] 2026-03-01 19:21:30,573 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-01 20:21:54] 2026-03-01 19:21:30,573 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-01 20:21:54] 2026-03-01 19:21:30,573 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-01 20:21:54] 2026-03-01 19:21:30,573 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-01 20:21:54] 2026-03-01 19:21:30,573 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-01 20:21:54] 2026-03-01 19:21:30,573 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-01 20:21:54] 2026-03-01 19:21:30,573 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-01 20:21:54] 2026-03-01 19:21:30,573 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-01 20:21:54] 2026-03-01 19:21:30,573 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-01 20:21:54] 2026-03-01 19:21:30,573 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-01 20:21:54] 2026-03-01 19:21:30,573 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-01 20:21:54] 2026-03-01 19:21:30,573 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-01 20:21:54] 2026-03-01 19:21:30,573 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-01 20:21:54] 2026-03-01 19:21:30,573 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-01 20:21:54] 2026-03-01 19:21:30,574 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-01 20:21:54] 2026-03-01 19:21:30,574 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-01 20:21:54] 2026-03-01 19:21:30,574 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-01 20:21:54] 2026-03-01 19:21:30,574 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-01 20:21:54] 2026-03-01 19:21:30,574 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-01 20:21:54] 2026-03-01 19:21:30,574 | INFO     | job 7033996586 has completed (purged errors)
[2026-03-01 20:21:54] 2026-03-01 19:21:30,574 | INFO     | overall cleanup function is called
[2026-03-01 20:21:54] 2026-03-01 19:21:31,580 | INFO     | --- collectZombieJob: --- 10, [612635]
[2026-03-01 20:21:54] 2026-03-01 19:21:31,580 | INFO     | zombie collector waiting for pid 612635
[2026-03-01 20:21:54] 2026-03-01 19:21:31,581 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-01 20:21:54] 2026-03-01 19:21:31,581 | INFO     | collected zombie processes
[2026-03-01 20:21:54] 2026-03-01 19:21:31,581 | INFO     | will attempt to kill all subprocesses of pid=612635
[2026-03-01 20:21:54] 2026-03-01 19:21:31,621 | INFO     | process IDs to be killed: [612635] (in reverse order)
[2026-03-01 20:21:54] 2026-03-01 19:21:31,646 | WARNING  | found no corresponding commands to process id(s)
[2026-03-01 20:21:54] 2026-03-01 19:21:31,647 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-01 20:21:54] 2026-03-01 19:21:31,648 | INFO     | did not find any defunct processes belonging to 612635
[2026-03-01 20:21:54] 2026-03-01 19:21:31,649 | INFO     | did not find any defunct processes belonging to 612635
[2026-03-01 20:21:54] 2026-03-01 19:21:31,649 | INFO     | ready for new job
[2026-03-01 20:21:54] 2026-03-01 19:21:31,649 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-01 20:21:54] 2026-03-01 19:21:31,650 | INFO     | **************************************
[2026-03-01 20:21:54] 2026-03-01 19:21:31,650 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-01 20:21:54] 2026-03-01 19:21:31,650 | INFO     | **************************************
[2026-03-01 20:21:54] 2026-03-01 19:21:31,650 | INFO     | 
[2026-03-01 20:21:54] 2026-03-01 19:21:31,650 | INFO     | architecture information:
[2026-03-01 20:21:54] 2026-03-01 19:21:31,650 | INFO     | executing command: cat /etc/os-release
[2026-03-01 20:21:54] 2026-03-01 19:21:31,659 | INFO     | cat /etc/os-release:
[2026-03-01 20:21:54] NAME="CentOS Linux"
[2026-03-01 20:21:54] VERSION="7 (Core)"
[2026-03-01 20:21:54] ID="centos"
[2026-03-01 20:21:54] ID_LIKE="rhel fedora"
[2026-03-01 20:21:54] VERSION_ID="7"
[2026-03-01 20:21:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-01 20:21:54] ANSI_COLOR="0;31"
[2026-03-01 20:21:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-01 20:21:54] HOME_URL="https://www.centos.org/"
[2026-03-01 20:21:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-01 20:21:54] 
[2026-03-01 20:21:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-01 20:21:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-01 20:21:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-01 20:21:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-01 20:21:54] 
[2026-03-01 20:21:54] 2026-03-01 19:21:31,660 | INFO     | **************************************
[2026-03-01 20:21:54] 2026-03-01 19:21:32,163 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-01 20:21:54] 2026-03-01 19:21:32,177 | INFO     | sufficient remaining disk space (377146572800 B)
[2026-03-01 20:21:54] 2026-03-01 19:21:32,177 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-01 20:21:54] 2026-03-01 19:21:32,177 | INFO     | current server update state: UPDATING_FINAL
[2026-03-01 20:21:54] 2026-03-01 19:21:32,177 | INFO     | update_server=False
[2026-03-01 20:21:54] 2026-03-01 19:21:32,177 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-01 20:21:54] 2026-03-01 19:21:32,177 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-01 20:21:54] 2026-03-01 19:21:32,178 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-01 20:21:54] 2026-03-01 19:21:32,178 | INFO     | aborting loop
[2026-03-01 20:21:54] 2026-03-01 19:21:32,178 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-01 20:21:54] 2026-03-01 19:21:32,178 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-01 20:21:54] 2026-03-01 19:21:32,178 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-01 20:21:54] 2026-03-01 19:21:32,178 | INFO     | found 0 job(s) in 20 queues
[2026-03-01 20:21:54] 2026-03-01 19:21:32,178 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-01 20:21:54] 2026-03-01 19:21:32,178 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-01 20:21:54] 2026-03-01 19:21:32,259 | INFO     | all data control threads have been joined
[2026-03-01 20:21:54] 2026-03-01 19:21:32,552 | INFO     | all job control threads have been joined
[2026-03-01 20:21:54] 2026-03-01 19:21:33,135 | INFO     | all payload control threads have been joined
[2026-03-01 20:21:54] 2026-03-01 19:21:33,183 | INFO     | [job] retrieve thread has finished
[2026-03-01 20:21:54] 2026-03-01 19:21:33,183 | INFO     | [job] job monitor thread has finished
[2026-03-01 20:21:54] 2026-03-01 19:21:33,184 | INFO     | [job] queue monitor thread has finished
[2026-03-01 20:21:54] 2026-03-01 19:21:33,261 | INFO     | [data] control thread has finished
[2026-03-01 20:21:54] 2026-03-01 19:21:33,524 | INFO     | [payload] execute_payloads thread has finished
[2026-03-01 20:21:54] 2026-03-01 19:21:33,558 | INFO     | [job] control thread has finished
[2026-03-01 20:21:54] 2026-03-01 19:21:33,853 | INFO     | [payload] validate_post thread has finished
[2026-03-01 20:21:54] 2026-03-01 19:21:34,078 | INFO     | [job] validate thread has finished
[2026-03-01 20:21:54] 2026-03-01 19:21:34,132 | INFO     | [payload] validate_pre thread has finished
[2026-03-01 20:21:54] 2026-03-01 19:21:34,132 | INFO     | [job] create_data_payload thread has finished
[2026-03-01 20:21:54] 2026-03-01 19:21:34,140 | INFO     | [payload] control thread has finished
[2026-03-01 20:21:54] 2026-03-01 19:21:34,183 | INFO     | [data] copytool_out thread has finished
[2026-03-01 20:21:54] 2026-03-01 19:21:34,351 | INFO     | [payload] failed_post thread has finished
[2026-03-01 20:21:54] 2026-03-01 19:21:34,368 | INFO     | [data] copytool_in thread has finished
[2026-03-01 20:21:54] 2026-03-01 19:21:36,185 | INFO     | [data] queue_monitor thread has finished
[2026-03-01 20:21:54] 2026-03-01 19:21:43,179 | INFO     | job.realtimelogging is not enabled
[2026-03-01 20:21:54] 2026-03-01 19:21:44,185 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-01 20:21:54] 2026-03-01 19:21:47,004 | INFO     | [monitor] cgroup control has ended
[2026-03-01 20:21:54] 2026-03-01 19:21:49,102 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140305426466624)>', '<ExcThread(monitor, started 140305072371456)>']
[2026-03-01 20:21:54] 2026-03-01 19:21:49,264 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-01 20:21:54] 2026-03-01 19:21:49,265 | INFO     | [monitor] control thread has ended
[2026-03-01 20:21:54] 2026-03-01 19:21:54,128 | INFO     | all workflow threads have been joined
[2026-03-01 20:21:54] 2026-03-01 19:21:54,128 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-01 20:21:54] 2026-03-01 19:21:54,128 | INFO     | traces error code: 0
[2026-03-01 20:21:54] 2026-03-01 19:21:54,128 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-01 20:21:54] 2026-03-01 19:21:54,179 [wrapper] ==== pilot stdout END ====
[2026-03-01 20:21:54] 2026-03-01 19:21:54,182 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-01 20:21:54] 2026-03-01 19:21:54,184 [wrapper] pilotpid: 608212
[2026-03-01 20:21:54] 2026-03-01 19:21:54,187 [wrapper] Pilot exit status: 0
[2026-03-01 20:21:54] 2026-03-01 19:21:54,195 [wrapper] pandaids: 7033996586
[2026-03-01 20:21:54] 2026-03-01 19:21:54,211 [wrapper] cleanup supervisor_pilot  618236 608213
[2026-03-01 20:21:54] 2026-03-01 19:21:54,214 [wrapper] Test setup, not cleaning
[2026-03-01 20:21:54] 2026-03-01 19:21:54,216 [wrapper] apfmon messages muted
[2026-03-01 20:21:54] 2026-03-01 19:21:54,219 [wrapper] ==== wrapper stdout END ====
[2026-03-01 20:21:54] 2026-03-01 19:21:54,221 [wrapper] ==== wrapper stderr END ====
[2026-03-01 20:21:54]  *** Error codes and diagnostics ***
[2026-03-01 20:21:54]     "exeErrorCode": 0,
[2026-03-01 20:21:54]     "exeErrorDiag": "",
[2026-03-01 20:21:54]     "pilotErrorCode": 0,
[2026-03-01 20:21:54]     "pilotErrorDiag": "",
[2026-03-01 20:21:54]  *** Listing of results directory ***
[2026-03-01 20:21:54] total 509608
[2026-03-01 20:21:54] -rw-r--r-- 1 boinc boinc    584627 Feb 28 23:55 pilot3.tar.gz
[2026-03-01 20:21:54] -rwx------ 1 boinc boinc     36322 Feb 28 23:56 runpilot2-wrapper.sh
[2026-03-01 20:21:54] -rw-r--r-- 1 boinc boinc      5111 Feb 28 23:58 queuedata.json
[2026-03-01 20:21:54] -rw-r--r-- 1 boinc boinc       100 Mar  1 18:40 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-01 20:21:54] -rwxr-xr-x 1 boinc boinc      7986 Mar  1 18:40 run_atlas
[2026-03-01 20:21:54] -rw-r--r-- 1 boinc boinc       105 Mar  1 18:40 job.xml
[2026-03-01 20:21:54] -rw-r--r-- 2 boinc boinc 284958815 Mar  1 18:40 EVNT.48220205._000127.pool.root.1
[2026-03-01 20:21:54] -rw-r--r-- 2 boinc boinc    597977 Mar  1 18:40 input.tar.gz
[2026-03-01 20:21:54] -rw-r--r-- 2 boinc boinc     15845 Mar  1 18:40 start_atlas.sh
[2026-03-01 20:21:54] drwxrwx--x 2 boinc boinc      4096 Mar  1 18:40 shared
[2026-03-01 20:21:54] -rw-r--r-- 1 boinc boinc         0 Mar  1 18:40 boinc_setup_complete
[2026-03-01 20:21:54] -rw-r--r-- 1 boinc boinc      6447 Mar  1 18:40 init_data.xml
[2026-03-01 20:21:54] -rw-r--r-- 1 boinc boinc         0 Mar  1 18:40 boinc_lockfile
[2026-03-01 20:21:54] -rw-r--r-- 1 boinc boinc      2588 Mar  1 18:40 pandaJob.out
[2026-03-01 20:21:54] -rw------- 1 boinc boinc    998184 Mar  1 18:40 agis_schedconf.cvmfs.json
[2026-03-01 20:21:54] -rw------- 1 boinc boinc   1513015 Mar  1 18:40 agis_ddmendpoints.agis.ALL.json
[2026-03-01 20:21:54] -rw------- 1 boinc boinc       418 Mar  1 18:40 workernode_map.json
[2026-03-01 20:21:54] drwx------ 5 boinc boinc      4096 Mar  1 18:40 pilot3
[2026-03-01 20:21:54] -rw------- 1 boinc boinc        95 Mar  1 20:21 pilot_heartbeat.json
[2026-03-01 20:21:54] -rw------- 1 boinc boinc 230675246 Mar  1 20:21 HITS.48838581._002922.pool.root.1
[2026-03-01 20:21:54] -rw-r--r-- 1 boinc boinc       529 Mar  1 20:21 boinc_task_state.xml
[2026-03-01 20:21:54] -rw------- 1 boinc boinc      1018 Mar  1 20:21 memory_monitor_summary.json
[2026-03-01 20:21:54] -rw------- 1 boinc boinc    268817 Mar  1 20:21 log.48838581._002922.job.log.tgz.1
[2026-03-01 20:21:54] -rw------- 1 boinc boinc      6302 Mar  1 20:21 heartbeat.json
[2026-03-01 20:21:54] -rw-r--r-- 1 boinc boinc      8192 Mar  1 20:21 boinc_mmap_file
[2026-03-01 20:21:54] -rw-r--r-- 1 boinc boinc        27 Mar  1 20:21 wrapper_checkpoint.txt
[2026-03-01 20:21:54] -rw------- 1 boinc boinc      4624 Mar  1 20:21 pilotlog.txt
[2026-03-01 20:21:54] -rw------- 1 boinc boinc    874358 Mar  1 20:21 log.48838581._002922.job.log.1
[2026-03-01 20:21:54] -rw------- 1 boinc boinc       357 Mar  1 20:21 output.list
[2026-03-01 20:21:54] -rw-r--r-- 1 boinc boinc       620 Mar  1 20:21 runtime_log
[2026-03-01 20:21:54] -rw------- 1 boinc boinc   1157120 Mar  1 20:21 result.tar.gz
[2026-03-01 20:21:54] -rw-r--r-- 1 boinc boinc      8911 Mar  1 20:21 runtime_log.err
[2026-03-01 20:21:54] -rw------- 1 boinc boinc       660 Mar  1 20:21 5ZfKDm6PiG9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmnG8KDmYscHJm.diag
[2026-03-01 20:21:54] -rw-r--r-- 1 boinc boinc     13004 Mar  1 20:21 stderr.txt
[2026-03-01 20:21:54] HITS file was successfully produced:
[2026-03-01 20:21:54] -rw------- 1 boinc boinc 230675246 Mar  1 20:21 shared/HITS.pool.root.1
[2026-03-01 20:21:54]  *** Contents of shared directory: ***
[2026-03-01 20:21:54] total 505292
[2026-03-01 20:21:54] -rw-r--r-- 2 boinc boinc 284958815 Mar  1 18:40 ATLAS.root_0
[2026-03-01 20:21:54] -rw-r--r-- 2 boinc boinc    597977 Mar  1 18:40 input.tar.gz
[2026-03-01 20:21:54] -rw-r--r-- 2 boinc boinc     15845 Mar  1 18:40 start_atlas.sh
[2026-03-01 20:21:54] -rw------- 1 boinc boinc 230675246 Mar  1 20:21 HITS.pool.root.1
[2026-03-01 20:21:54] -rw------- 1 boinc boinc   1157120 Mar  1 20:21 result.tar.gz
20:21:56 (604170): run_atlas exited; CPU time 17275.158939
20:21:56 (604170): called boinc_finish(0)

</stderr_txt>
]]>

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