Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:15:32 (3599166): wrapper (7.7.26015): starting
11:15:32 (3599166): wrapper: running run_atlas (--nthreads 3)
[2026-03-01 11:15:32] Arguments: --nthreads 3
[2026-03-01 11:15:32] Threads: 3
[2026-03-01 11:15:32] Checking for CVMFS
[2026-03-01 11:15:32] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-01 11:15:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-01 11:15:33] Running cvmfs_config stat atlas.cern.ch
[2026-03-01 11:15:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-01 11:15:33] 2.9.2.0 2854294 5402 82820 156766 2 50 27068584 36864000 0 130560 0 2094093 99.980 219280 17619 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-01 11:15:33] CVMFS is ok
[2026-03-01 11:15:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-01 11:15:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-01 11:15:33] Further information can be found at the LHC@home message board.
[2026-03-01 11:15:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-01 11:15:33] Checking for apptainer binary...
[2026-03-01 11:15:33] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-01 11:15:33] Running /usr/bin/apptainer --version
[2026-03-01 11:15:33] apptainer version 1.4.1-1.1
[2026-03-01 11:15:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-01 11:15:33] atlasA223b
[2026-03-01 11:15:33] apptainer works
[2026-03-01 11:15:33] Set ATHENA_PROC_NUMBER=3
[2026-03-01 11:15:33] Set ATHENA_CORE_NUMBER=3
[2026-03-01 11:15:33] Starting ATLAS job with PandaID=7033545435
[2026-03-01 11:15:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-01 14:11:23]  *** The last 200 lines of the pilot log: ***
[2026-03-01 14:11:23] 2026-03-01 13:10:51,172 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-01 14:11:23] 2026-03-01 13:10:51,172 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-01 14:11:23] 2026-03-01 13:10:51,172 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-01 14:11:23] 2026-03-01 13:10:51,172 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-01 14:11:23] 2026-03-01 13:10:51,172 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-01 14:11:23] 2026-03-01 13:10:51,172 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-01 14:11:23] 2026-03-01 13:10:51,172 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-01 14:11:23] 2026-03-01 13:10:51,172 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-01 14:11:23] 2026-03-01 13:10:51,172 | INFO     | job 7033545435 has completed (purged errors)
[2026-03-01 14:11:23] 2026-03-01 13:10:51,172 | INFO     | overall cleanup function is called
[2026-03-01 14:11:23] 2026-03-01 13:10:52,179 | INFO     | --- collectZombieJob: --- 10, [3607634]
[2026-03-01 14:11:23] 2026-03-01 13:10:52,179 | INFO     | zombie collector waiting for pid 3607634
[2026-03-01 14:11:23] 2026-03-01 13:10:52,179 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-01 14:11:23] 2026-03-01 13:10:52,179 | INFO     | collected zombie processes
[2026-03-01 14:11:23] 2026-03-01 13:10:52,179 | INFO     | will attempt to kill all subprocesses of pid=3607634
[2026-03-01 14:11:23] 2026-03-01 13:10:52,221 | INFO     | process IDs to be killed: [3607634] (in reverse order)
[2026-03-01 14:11:23] 2026-03-01 13:10:52,247 | WARNING  | found no corresponding commands to process id(s)
[2026-03-01 14:11:23] 2026-03-01 13:10:52,247 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-01 14:11:23] 2026-03-01 13:10:52,249 | INFO     | did not find any defunct processes belonging to 3607634
[2026-03-01 14:11:23] 2026-03-01 13:10:52,250 | INFO     | did not find any defunct processes belonging to 3607634
[2026-03-01 14:11:23] 2026-03-01 13:10:52,250 | INFO     | ready for new job
[2026-03-01 14:11:23] 2026-03-01 13:10:52,250 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-01 14:11:23] 2026-03-01 13:10:52,251 | INFO     | **************************************
[2026-03-01 14:11:23] 2026-03-01 13:10:52,251 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-01 14:11:23] 2026-03-01 13:10:52,251 | INFO     | **************************************
[2026-03-01 14:11:23] 2026-03-01 13:10:52,251 | INFO     | 
[2026-03-01 14:11:23] 2026-03-01 13:10:52,251 | INFO     | architecture information:
[2026-03-01 14:11:23] 2026-03-01 13:10:52,252 | INFO     | executing command: cat /etc/os-release
[2026-03-01 14:11:23] 2026-03-01 13:10:52,261 | INFO     | cat /etc/os-release:
[2026-03-01 14:11:23] NAME="CentOS Linux"
[2026-03-01 14:11:23] VERSION="7 (Core)"
[2026-03-01 14:11:23] ID="centos"
[2026-03-01 14:11:23] ID_LIKE="rhel fedora"
[2026-03-01 14:11:23] VERSION_ID="7"
[2026-03-01 14:11:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-01 14:11:23] ANSI_COLOR="0;31"
[2026-03-01 14:11:23] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-01 14:11:23] HOME_URL="https://www.centos.org/"
[2026-03-01 14:11:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-01 14:11:23] 
[2026-03-01 14:11:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-01 14:11:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-01 14:11:23] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-01 14:11:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-01 14:11:23] 
[2026-03-01 14:11:23] 2026-03-01 13:10:52,262 | INFO     | **************************************
[2026-03-01 14:11:23] 2026-03-01 13:10:52,765 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-01 14:11:23] 2026-03-01 13:10:52,778 | INFO     | sufficient remaining disk space (377493651456 B)
[2026-03-01 14:11:23] 2026-03-01 13:10:52,778 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-01 14:11:23] 2026-03-01 13:10:52,778 | INFO     | current server update state: UPDATING_FINAL
[2026-03-01 14:11:23] 2026-03-01 13:10:52,778 | INFO     | update_server=False
[2026-03-01 14:11:23] 2026-03-01 13:10:52,778 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-01 14:11:23] 2026-03-01 13:10:52,778 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-01 14:11:23] 2026-03-01 13:10:52,778 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-01 14:11:23] 2026-03-01 13:10:53,016 | INFO     | all payload control threads have been joined
[2026-03-01 14:11:23] 2026-03-01 13:10:53,574 | INFO     | all job control threads have been joined
[2026-03-01 14:11:23] 2026-03-01 13:10:53,675 | INFO     | all data control threads have been joined
[2026-03-01 14:11:23] 2026-03-01 13:10:53,784 | INFO     | [job] retrieve thread has finished
[2026-03-01 14:11:23] 2026-03-01 13:10:53,784 | INFO     | [job] queue monitor thread has finished
[2026-03-01 14:11:23] 2026-03-01 13:10:53,820 | INFO     | [data] copytool_in thread has finished
[2026-03-01 14:11:23] 2026-03-01 13:10:53,891 | INFO     | [payload] failed_post thread has finished
[2026-03-01 14:11:23] 2026-03-01 13:10:54,022 | INFO     | [payload] control thread has finished
[2026-03-01 14:11:23] 2026-03-01 13:10:54,083 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-01 14:11:23] 2026-03-01 13:10:54,580 | INFO     | [job] control thread has finished
[2026-03-01 14:11:23] 2026-03-01 13:10:54,676 | INFO     | [monitor] cgroup control has ended
[2026-03-01 14:11:23] 2026-03-01 13:10:54,680 | INFO     | [data] control thread has finished
[2026-03-01 14:11:23] 2026-03-01 13:10:54,750 | INFO     | [payload] execute_payloads thread has finished
[2026-03-01 14:11:23] 2026-03-01 13:10:54,775 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-01 14:11:23] 2026-03-01 13:10:54,926 | WARNING  | process 3607634 can no longer be monitored (due to stat problems) - aborting
[2026-03-01 14:11:23] 2026-03-01 13:10:54,954 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-01 14:11:23] 2026-03-01 13:10:54,976 | INFO     | [payload] validate_post thread has finished
[2026-03-01 14:11:23] 2026-03-01 13:10:54,990 | INFO     | number of running child processes to parent process 3607634: 1
[2026-03-01 14:11:23] 2026-03-01 13:10:54,990 | INFO     | maximum number of monitored processes: 6
[2026-03-01 14:11:23] 2026-03-01 13:10:54,990 | INFO     | aborting job monitoring since job object (job id=7033545435) has expired
[2026-03-01 14:11:23] 2026-03-01 13:10:54,990 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-01 14:11:23] 2026-03-01 13:10:54,990 | INFO     | will abort loop
[2026-03-01 14:11:23] 2026-03-01 13:10:55,050 | INFO     | [job] validate thread has finished
[2026-03-01 14:11:23] 2026-03-01 13:10:55,180 | INFO     | [payload] validate_pre thread has finished
[2026-03-01 14:11:23] 2026-03-01 13:10:55,183 | INFO     | [job] create_data_payload thread has finished
[2026-03-01 14:11:23] 2026-03-01 13:10:55,996 | INFO     | [job] job monitor thread has finished
[2026-03-01 14:11:23] 2026-03-01 13:10:56,090 | INFO     | [data] copytool_out thread has finished
[2026-03-01 14:11:23] 2026-03-01 13:10:56,785 | INFO     | [data] queue_monitor thread has finished
[2026-03-01 14:11:23] 2026-03-01 13:10:57,191 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140280371423040)>', '<ExcThread(monitor, started 140280090343168)>']
[2026-03-01 14:11:23] 2026-03-01 13:11:02,214 | INFO     | all workflow threads have been joined
[2026-03-01 14:11:23] 2026-03-01 13:11:02,214 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-01 14:11:23] 2026-03-01 13:11:02,215 | INFO     | traces error code: 0
[2026-03-01 14:11:23] 2026-03-01 13:11:02,215 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-01 14:11:23] 2026-03-01 13:11:23,543 | INFO     | PID=3603207 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-01 14:11:23] 2026-03-01 13:11:23,543 | INFO     | found 0 job(s) in 20 queues
[2026-03-01 14:11:23] 2026-03-01 13:11:23,543 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-01 14:11:23] 2026-03-01 13:11:23,543 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-01 14:11:23] 2026-03-01 13:11:23,543 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-01 14:11:23] 2026-03-01 13:11:23,543 | CRITICAL | thread 'MainThread' is not alive
[2026-03-01 14:11:23] 2026-03-01 13:11:23,543 | INFO     | [monitor] control thread has ended
[2026-03-01 14:11:23] 2026-03-01 13:11:23,591 [wrapper] ==== pilot stdout END ====
[2026-03-01 14:11:23] 2026-03-01 13:11:23,593 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-01 14:11:23] 2026-03-01 13:11:23,596 [wrapper] pilotpid: 3603207
[2026-03-01 14:11:23] 2026-03-01 13:11:23,598 [wrapper] Pilot exit status: 0
[2026-03-01 14:11:23] 2026-03-01 13:11:23,606 [wrapper] pandaids: 7033545435
[2026-03-01 14:11:23] 2026-03-01 13:11:23,623 [wrapper] cleanup supervisor_pilot 3614330 3603208
[2026-03-01 14:11:23] 2026-03-01 13:11:23,626 [wrapper] Test setup, not cleaning
[2026-03-01 14:11:23] 2026-03-01 13:11:23,629 [wrapper] apfmon messages muted
[2026-03-01 14:11:23] 2026-03-01 13:11:23,631 [wrapper] ==== wrapper stdout END ====
[2026-03-01 14:11:23] 2026-03-01 13:11:23,633 [wrapper] ==== wrapper stderr END ====
[2026-03-01 14:11:23]  *** Error codes and diagnostics ***
[2026-03-01 14:11:23]     "exeErrorCode": 0,
[2026-03-01 14:11:23]     "exeErrorDiag": "",
[2026-03-01 14:11:23]     "pilotErrorCode": 0,
[2026-03-01 14:11:23]     "pilotErrorDiag": "",
[2026-03-01 14:11:23]  *** Listing of results directory ***
[2026-03-01 14:11:23] total 398432
[2026-03-01 14:11:23] -rw-r--r-- 1 boinc boinc    584627 Feb 28 16:58 pilot3.tar.gz
[2026-03-01 14:11:23] -rwx------ 1 boinc boinc     36322 Feb 28 17:00 runpilot2-wrapper.sh
[2026-03-01 14:11:23] -rw-r--r-- 1 boinc boinc      5111 Feb 28 17:01 queuedata.json
[2026-03-01 14:11:23] -rw-r--r-- 1 boinc boinc       100 Mar  1 11:15 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-01 14:11:23] -rwxr-xr-x 1 boinc boinc      7986 Mar  1 11:15 run_atlas
[2026-03-01 14:11:23] -rw-r--r-- 1 boinc boinc       105 Mar  1 11:15 job.xml
[2026-03-01 14:11:23] -rw-r--r-- 2 boinc boinc 202752746 Mar  1 11:15 EVNT.48452346._000003.pool.root.1
[2026-03-01 14:11:23] -rw-r--r-- 2 boinc boinc    597988 Mar  1 11:15 input.tar.gz
[2026-03-01 14:11:23] -rw-r--r-- 2 boinc boinc     15845 Mar  1 11:15 start_atlas.sh
[2026-03-01 14:11:23] drwxrwx--x 2 boinc boinc      4096 Mar  1 11:15 shared
[2026-03-01 14:11:23] -rw-r--r-- 1 boinc boinc         0 Mar  1 11:15 boinc_setup_complete
[2026-03-01 14:11:23] -rw-r--r-- 1 boinc boinc      6449 Mar  1 11:15 init_data.xml
[2026-03-01 14:11:23] -rw-r--r-- 1 boinc boinc         0 Mar  1 11:15 boinc_lockfile
[2026-03-01 14:11:23] -rw-r--r-- 1 boinc boinc      2694 Mar  1 11:15 pandaJob.out
[2026-03-01 14:11:23] -rw------- 1 boinc boinc    998198 Mar  1 11:15 agis_schedconf.cvmfs.json
[2026-03-01 14:11:23] -rw------- 1 boinc boinc   1513015 Mar  1 11:15 agis_ddmendpoints.agis.ALL.json
[2026-03-01 14:11:23] -rw------- 1 boinc boinc       418 Mar  1 11:15 workernode_map.json
[2026-03-01 14:11:23] drwx------ 5 boinc boinc      4096 Mar  1 11:15 pilot3
[2026-03-01 14:11:23] -rw------- 1 boinc boinc 197692469 Mar  1 14:10 HITS.48844027._000060.pool.root.1
[2026-03-01 14:11:23] -rw------- 1 boinc boinc        95 Mar  1 14:10 pilot_heartbeat.json
[2026-03-01 14:11:23] -rw-r--r-- 1 boinc boinc       530 Mar  1 14:10 boinc_task_state.xml
[2026-03-01 14:11:23] -rw------- 1 boinc boinc      1017 Mar  1 14:10 memory_monitor_summary.json
[2026-03-01 14:11:23] -rw------- 1 boinc boinc    325809 Mar  1 14:10 log.48844027._000060.job.log.tgz.1
[2026-03-01 14:11:23] -rw------- 1 boinc boinc      6293 Mar  1 14:10 heartbeat.json
[2026-03-01 14:11:23] -rw-r--r-- 1 boinc boinc      8192 Mar  1 14:11 boinc_mmap_file
[2026-03-01 14:11:23] -rw-r--r-- 1 boinc boinc        28 Mar  1 14:11 wrapper_checkpoint.txt
[2026-03-01 14:11:23] -rw------- 1 boinc boinc       817 Mar  1 14:11 pilotlog.txt
[2026-03-01 14:11:23] -rw------- 1 boinc boinc   1489831 Mar  1 14:11 log.48844027._000060.job.log.1
[2026-03-01 14:11:23] -rw------- 1 boinc boinc       357 Mar  1 14:11 output.list
[2026-03-01 14:11:23] -rw-r--r-- 1 boinc boinc       620 Mar  1 14:11 runtime_log
[2026-03-01 14:11:23] -rw------- 1 boinc boinc   1832960 Mar  1 14:11 result.tar.gz
[2026-03-01 14:11:23] -rw------- 1 boinc boinc       663 Mar  1 14:11 tfKODmwubG9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmXc7KDmfytEzm.diag
[2026-03-01 14:11:23] -rw-r--r-- 1 boinc boinc      8917 Mar  1 14:11 runtime_log.err
[2026-03-01 14:11:23] -rw-r--r-- 1 boinc boinc     12347 Mar  1 14:11 stderr.txt
[2026-03-01 14:11:23] HITS file was successfully produced:
[2026-03-01 14:11:23] -rw------- 1 boinc boinc 197692469 Mar  1 14:10 shared/HITS.pool.root.1
[2026-03-01 14:11:23]  *** Contents of shared directory: ***
[2026-03-01 14:11:23] total 393464
[2026-03-01 14:11:23] -rw-r--r-- 2 boinc boinc 202752746 Mar  1 11:15 ATLAS.root_0
[2026-03-01 14:11:23] -rw-r--r-- 2 boinc boinc    597988 Mar  1 11:15 input.tar.gz
[2026-03-01 14:11:23] -rw-r--r-- 2 boinc boinc     15845 Mar  1 11:15 start_atlas.sh
[2026-03-01 14:11:23] -rw------- 1 boinc boinc 197692469 Mar  1 14:10 HITS.pool.root.1
[2026-03-01 14:11:23] -rw------- 1 boinc boinc   1832960 Mar  1 14:11 result.tar.gz
14:11:25 (3599166): run_atlas exited; CPU time 30673.685822
14:11:25 (3599166): called boinc_finish(0)

</stderr_txt>
]]>

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