Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:52:19 (3102814): wrapper (7.7.26015): starting
12:52:19 (3102814): wrapper: running run_atlas (--nthreads 3)
[2026-03-01 12:52:19] Arguments: --nthreads 3
[2026-03-01 12:52:19] Threads: 3
[2026-03-01 12:52:19] Checking for CVMFS
[2026-03-01 12:52:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-01 12:52:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-01 12:52:20] Running cvmfs_config stat atlas.cern.ch
[2026-03-01 12:52:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-01 12:52:20] 2.9.2.0 2730021 3052 81808 156768 2 50 29733999 36864001 0 130560 0 1047495 99.981 113175 10402 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-01 12:52:20] CVMFS is ok
[2026-03-01 12:52:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-01 12:52:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-01 12:52:20] Further information can be found at the LHC@home message board.
[2026-03-01 12:52:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-01 12:52:20] Checking for apptainer binary...
[2026-03-01 12:52:20] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-01 12:52:20] Running /usr/bin/apptainer --version
[2026-03-01 12:52:20] apptainer version 1.4.1-1.1
[2026-03-01 12:52:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-01 12:52:20] thA349
[2026-03-01 12:52:20] apptainer works
[2026-03-01 12:52:20] Set ATHENA_PROC_NUMBER=3
[2026-03-01 12:52:20] Set ATHENA_CORE_NUMBER=3
[2026-03-01 12:52:20] Starting ATLAS job with PandaID=7033545397
[2026-03-01 12:52:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-01 15:41:48]  *** The last 200 lines of the pilot log: ***
[2026-03-01 15:41:48] 2026-03-01 14:41:09,940 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-01 15:41:48] 2026-03-01 14:41:09,940 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-01 15:41:48] 2026-03-01 14:41:09,940 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-01 15:41:48] 2026-03-01 14:41:09,940 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-01 15:41:48] 2026-03-01 14:41:09,940 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-01 15:41:48] 2026-03-01 14:41:09,940 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-01 15:41:48] 2026-03-01 14:41:09,940 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-01 15:41:48] 2026-03-01 14:41:09,940 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-01 15:41:48] 2026-03-01 14:41:09,940 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-01 15:41:48] 2026-03-01 14:41:09,940 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-01 15:41:48] 2026-03-01 14:41:09,940 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-01 15:41:48] 2026-03-01 14:41:09,940 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-01 15:41:48] 2026-03-01 14:41:09,940 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-01 15:41:48] 2026-03-01 14:41:09,940 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-01 15:41:48] 2026-03-01 14:41:09,940 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-01 15:41:48] 2026-03-01 14:41:09,940 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-01 15:41:48] 2026-03-01 14:41:09,941 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-01 15:41:48] 2026-03-01 14:41:09,941 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-01 15:41:48] 2026-03-01 14:41:09,941 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-01 15:41:48] 2026-03-01 14:41:09,941 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-01 15:41:48] 2026-03-01 14:41:09,941 | INFO     | job 7033545397 has completed (purged errors)
[2026-03-01 15:41:48] 2026-03-01 14:41:09,941 | INFO     | overall cleanup function is called
[2026-03-01 15:41:48] 2026-03-01 14:41:10,947 | INFO     | --- collectZombieJob: --- 10, [3111271]
[2026-03-01 15:41:48] 2026-03-01 14:41:10,948 | INFO     | zombie collector waiting for pid 3111271
[2026-03-01 15:41:48] 2026-03-01 14:41:10,948 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-01 15:41:48] 2026-03-01 14:41:10,948 | INFO     | collected zombie processes
[2026-03-01 15:41:48] 2026-03-01 14:41:10,948 | INFO     | will attempt to kill all subprocesses of pid=3111271
[2026-03-01 15:41:48] 2026-03-01 14:41:10,988 | INFO     | process IDs to be killed: [3111271] (in reverse order)
[2026-03-01 15:41:48] 2026-03-01 14:41:11,011 | WARNING  | found no corresponding commands to process id(s)
[2026-03-01 15:41:48] 2026-03-01 14:41:11,012 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-01 15:41:48] 2026-03-01 14:41:11,013 | INFO     | did not find any defunct processes belonging to 3111271
[2026-03-01 15:41:48] 2026-03-01 14:41:11,014 | INFO     | did not find any defunct processes belonging to 3111271
[2026-03-01 15:41:48] 2026-03-01 14:41:11,014 | INFO     | ready for new job
[2026-03-01 15:41:48] 2026-03-01 14:41:11,014 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-01 15:41:48] 2026-03-01 14:41:11,015 | INFO     | **************************************
[2026-03-01 15:41:48] 2026-03-01 14:41:11,015 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-01 15:41:48] 2026-03-01 14:41:11,015 | INFO     | **************************************
[2026-03-01 15:41:48] 2026-03-01 14:41:11,015 | INFO     | 
[2026-03-01 15:41:48] 2026-03-01 14:41:11,015 | INFO     | architecture information:
[2026-03-01 15:41:48] 2026-03-01 14:41:11,016 | INFO     | executing command: cat /etc/os-release
[2026-03-01 15:41:48] 2026-03-01 14:41:11,024 | INFO     | cat /etc/os-release:
[2026-03-01 15:41:48] NAME="CentOS Linux"
[2026-03-01 15:41:48] VERSION="7 (Core)"
[2026-03-01 15:41:48] ID="centos"
[2026-03-01 15:41:48] ID_LIKE="rhel fedora"
[2026-03-01 15:41:48] VERSION_ID="7"
[2026-03-01 15:41:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-01 15:41:48] ANSI_COLOR="0;31"
[2026-03-01 15:41:48] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-01 15:41:48] HOME_URL="https://www.centos.org/"
[2026-03-01 15:41:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-01 15:41:48] 
[2026-03-01 15:41:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-01 15:41:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-01 15:41:48] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-01 15:41:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-01 15:41:48] 
[2026-03-01 15:41:48] 2026-03-01 14:41:11,024 | INFO     | **************************************
[2026-03-01 15:41:48] 2026-03-01 14:41:11,527 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-01 15:41:48] 2026-03-01 14:41:11,540 | INFO     | sufficient remaining disk space (274351521792 B)
[2026-03-01 15:41:48] 2026-03-01 14:41:11,540 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-01 15:41:48] 2026-03-01 14:41:11,540 | INFO     | current server update state: UPDATING_FINAL
[2026-03-01 15:41:48] 2026-03-01 14:41:11,540 | INFO     | update_server=False
[2026-03-01 15:41:48] 2026-03-01 14:41:11,540 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-01 15:41:48] 2026-03-01 14:41:11,540 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-01 15:41:48] 2026-03-01 14:41:11,540 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-01 15:41:48] 2026-03-01 14:41:11,648 | INFO     | all job control threads have been joined
[2026-03-01 15:41:48] 2026-03-01 14:41:11,706 | INFO     | all data control threads have been joined
[2026-03-01 15:41:48] 2026-03-01 14:41:11,791 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-01 15:41:48] 2026-03-01 14:41:11,792 | INFO     | aborting loop
[2026-03-01 15:41:48] 2026-03-01 14:41:12,546 | INFO     | [job] queue monitor thread has finished
[2026-03-01 15:41:48] 2026-03-01 14:41:12,546 | INFO     | [job] retrieve thread has finished
[2026-03-01 15:41:48] 2026-03-01 14:41:12,546 | INFO     | [payload] validate_pre thread has finished
[2026-03-01 15:41:48] 2026-03-01 14:41:12,597 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-01 15:41:48] 2026-03-01 14:41:12,624 | INFO     | [data] copytool_in thread has finished
[2026-03-01 15:41:48] 2026-03-01 14:41:12,653 | INFO     | [job] control thread has finished
[2026-03-01 15:41:48] 2026-03-01 14:41:12,712 | INFO     | [data] control thread has finished
[2026-03-01 15:41:48] 2026-03-01 14:41:12,797 | INFO     | [job] job monitor thread has finished
[2026-03-01 15:41:48] 2026-03-01 14:41:12,848 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-01 15:41:48] 2026-03-01 14:41:12,914 | INFO     | [payload] validate_post thread has finished
[2026-03-01 15:41:48] 2026-03-01 14:41:13,015 | INFO     | all payload control threads have been joined
[2026-03-01 15:41:48] 2026-03-01 14:41:13,845 | INFO     | [job] validate thread has finished
[2026-03-01 15:41:48] 2026-03-01 14:41:13,872 | INFO     | [job] create_data_payload thread has finished
[2026-03-01 15:41:48] 2026-03-01 14:41:13,988 | INFO     | [payload] execute_payloads thread has finished
[2026-03-01 15:41:48] 2026-03-01 14:41:14,020 | INFO     | [payload] control thread has finished
[2026-03-01 15:41:48] 2026-03-01 14:41:14,020 | INFO     | [payload] failed_post thread has finished
[2026-03-01 15:41:48] 2026-03-01 14:41:14,602 | INFO     | [data] copytool_out thread has finished
[2026-03-01 15:41:48] 2026-03-01 14:41:15,547 | INFO     | [data] queue_monitor thread has finished
[2026-03-01 15:41:48] 2026-03-01 14:41:41,824 | INFO     | PID=3106852 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-01 15:41:48] 2026-03-01 14:41:41,824 | INFO     | found 0 job(s) in 20 queues
[2026-03-01 15:41:48] 2026-03-01 14:41:41,824 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-01 15:41:48] 2026-03-01 14:41:41,824 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-01 15:41:48] 2026-03-01 14:41:41,855 | INFO     | [monitor] cgroup control has ended
[2026-03-01 15:41:48] 2026-03-01 14:41:43,322 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140591468595008)>', '<ExcThread(monitor, started 140590847092480)>']
[2026-03-01 15:41:48] 2026-03-01 14:41:43,831 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-01 15:41:48] 2026-03-01 14:41:43,831 | INFO     | [monitor] control thread has ended
[2026-03-01 15:41:48] 2026-03-01 14:41:48,348 | INFO     | all workflow threads have been joined
[2026-03-01 15:41:48] 2026-03-01 14:41:48,348 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-01 15:41:48] 2026-03-01 14:41:48,348 | INFO     | traces error code: 0
[2026-03-01 15:41:48] 2026-03-01 14:41:48,348 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-01 15:41:48] 2026-03-01 14:41:48,399 [wrapper] ==== pilot stdout END ====
[2026-03-01 15:41:48] 2026-03-01 14:41:48,402 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-01 15:41:48] 2026-03-01 14:41:48,404 [wrapper] pilotpid: 3106852
[2026-03-01 15:41:48] 2026-03-01 14:41:48,406 [wrapper] Pilot exit status: 0
[2026-03-01 15:41:48] 2026-03-01 14:41:48,413 [wrapper] pandaids: 7033545397
[2026-03-01 15:41:48] 2026-03-01 14:41:48,429 [wrapper] cleanup supervisor_pilot 3117556 3106853
[2026-03-01 15:41:48] 2026-03-01 14:41:48,431 [wrapper] Test setup, not cleaning
[2026-03-01 15:41:48] 2026-03-01 14:41:48,434 [wrapper] apfmon messages muted
[2026-03-01 15:41:48] 2026-03-01 14:41:48,436 [wrapper] ==== wrapper stdout END ====
[2026-03-01 15:41:48] 2026-03-01 14:41:48,438 [wrapper] ==== wrapper stderr END ====
[2026-03-01 15:41:48]  *** Error codes and diagnostics ***
[2026-03-01 15:41:48]     "exeErrorCode": 0,
[2026-03-01 15:41:48]     "exeErrorDiag": "",
[2026-03-01 15:41:48]     "pilotErrorCode": 0,
[2026-03-01 15:41:48]     "pilotErrorDiag": "",
[2026-03-01 15:41:48]  *** Listing of results directory ***
[2026-03-01 15:41:48] total 396464
[2026-03-01 15:41:48] -rw-r--r-- 1 boinc boinc    584627 Feb 28 16:58 pilot3.tar.gz
[2026-03-01 15:41:48] -rwx------ 1 boinc boinc     36322 Feb 28 17:00 runpilot2-wrapper.sh
[2026-03-01 15:41:48] -rw-r--r-- 1 boinc boinc      5111 Feb 28 17:01 queuedata.json
[2026-03-01 15:41:48] -rw-r--r-- 1 boinc boinc       100 Mar  1 12:52 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-01 15:41:48] -rwxr-xr-x 1 boinc boinc      7986 Mar  1 12:52 run_atlas
[2026-03-01 15:41:48] -rw-r--r-- 1 boinc boinc       105 Mar  1 12:52 job.xml
[2026-03-01 15:41:48] -rw-r--r-- 2 boinc boinc 202874843 Mar  1 12:52 EVNT.48452346._000001.pool.root.1
[2026-03-01 15:41:48] -rw-r--r-- 2 boinc boinc    597981 Mar  1 12:52 input.tar.gz
[2026-03-01 15:41:48] -rw-r--r-- 2 boinc boinc     15845 Mar  1 12:52 start_atlas.sh
[2026-03-01 15:41:48] drwxrwx--x 2 boinc boinc      4096 Mar  1 12:52 shared
[2026-03-01 15:41:48] -rw-r--r-- 1 boinc boinc         0 Mar  1 12:52 boinc_setup_complete
[2026-03-01 15:41:48] -rw-r--r-- 1 boinc boinc      6445 Mar  1 12:52 init_data.xml
[2026-03-01 15:41:48] -rw-r--r-- 1 boinc boinc         0 Mar  1 12:52 boinc_lockfile
[2026-03-01 15:41:48] -rw-r--r-- 1 boinc boinc      2693 Mar  1 12:52 pandaJob.out
[2026-03-01 15:41:48] -rw------- 1 boinc boinc    998184 Mar  1 12:52 agis_schedconf.cvmfs.json
[2026-03-01 15:41:48] -rw------- 1 boinc boinc   1513015 Mar  1 12:52 agis_ddmendpoints.agis.ALL.json
[2026-03-01 15:41:48] -rw------- 1 boinc boinc       422 Mar  1 12:52 workernode_map.json
[2026-03-01 15:41:48] drwx------ 5 boinc boinc      4096 Mar  1 12:52 pilot3
[2026-03-01 15:41:48] -rw------- 1 boinc boinc 195629328 Mar  1 15:40 HITS.48844027._000023.pool.root.1
[2026-03-01 15:41:48] -rw-r--r-- 1 boinc boinc       531 Mar  1 15:40 boinc_task_state.xml
[2026-03-01 15:41:48] -rw------- 1 boinc boinc      1015 Mar  1 15:41 memory_monitor_summary.json
[2026-03-01 15:41:48] -rw------- 1 boinc boinc    338688 Mar  1 15:41 log.48844027._000023.job.log.tgz.1
[2026-03-01 15:41:48] -rw------- 1 boinc boinc      6281 Mar  1 15:41 heartbeat.json
[2026-03-01 15:41:48] -rw------- 1 boinc boinc        95 Mar  1 15:41 pilot_heartbeat.json
[2026-03-01 15:41:48] -rw-r--r-- 1 boinc boinc        28 Mar  1 15:41 wrapper_checkpoint.txt
[2026-03-01 15:41:48] -rw------- 1 boinc boinc      4748 Mar  1 15:41 pilotlog.txt
[2026-03-01 15:41:48] -rw-r--r-- 1 boinc boinc      8192 Mar  1 15:41 boinc_mmap_file
[2026-03-01 15:41:48] -rw------- 1 boinc boinc   1440071 Mar  1 15:41 log.48844027._000023.job.log.1
[2026-03-01 15:41:48] -rw------- 1 boinc boinc       357 Mar  1 15:41 output.list
[2026-03-01 15:41:48] -rw-r--r-- 1 boinc boinc       620 Mar  1 15:41 runtime_log
[2026-03-01 15:41:48] -rw------- 1 boinc boinc   1792000 Mar  1 15:41 result.tar.gz
[2026-03-01 15:41:48] -rw-r--r-- 1 boinc boinc      8897 Mar  1 15:41 runtime_log.err
[2026-03-01 15:41:48] -rw------- 1 boinc boinc       659 Mar  1 15:41 MNSMDmwubG9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm4b7KDmmhqRHo.diag
[2026-03-01 15:41:48] -rw-r--r-- 1 boinc boinc     12828 Mar  1 15:41 stderr.txt
[2026-03-01 15:41:48] HITS file was successfully produced:
[2026-03-01 15:41:48] -rw------- 1 boinc boinc 195629328 Mar  1 15:40 shared/HITS.pool.root.1
[2026-03-01 15:41:48]  *** Contents of shared directory: ***
[2026-03-01 15:41:48] total 391528
[2026-03-01 15:41:48] -rw-r--r-- 2 boinc boinc 202874843 Mar  1 12:52 ATLAS.root_0
[2026-03-01 15:41:48] -rw-r--r-- 2 boinc boinc    597981 Mar  1 12:52 input.tar.gz
[2026-03-01 15:41:48] -rw-r--r-- 2 boinc boinc     15845 Mar  1 12:52 start_atlas.sh
[2026-03-01 15:41:48] -rw------- 1 boinc boinc 195629328 Mar  1 15:40 HITS.pool.root.1
[2026-03-01 15:41:48] -rw------- 1 boinc boinc   1792000 Mar  1 15:41 result.tar.gz
15:41:50 (3102814): run_atlas exited; CPU time 29598.140336
15:41:50 (3102814): called boinc_finish(0)

</stderr_txt>
]]>

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