Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:09:05 (3585151): wrapper (7.7.26015): starting
10:09:05 (3585151): wrapper: running run_atlas (--nthreads 3)
[2026-03-01 10:09:05] Arguments: --nthreads 3
[2026-03-01 10:09:05] Threads: 3
[2026-03-01 10:09:05] Checking for CVMFS
[2026-03-01 10:09:05] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-01 10:09:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-01 10:09:05] Running cvmfs_config stat atlas.cern.ch
[2026-03-01 10:09:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-01 10:09:05] 2.9.2.0 2854294 5335 83408 156763 1 50 27055421 36864000 0 130560 0 2054410 99.980 215488 17451 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-01 10:09:05] CVMFS is ok
[2026-03-01 10:09:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-01 10:09:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-01 10:09:05] Further information can be found at the LHC@home message board.
[2026-03-01 10:09:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-01 10:09:05] Checking for apptainer binary...
[2026-03-01 10:09:05] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-01 10:09:05] Running /usr/bin/apptainer --version
[2026-03-01 10:09:05] apptainer version 1.4.1-1.1
[2026-03-01 10:09:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-01 10:09:05] atlasA223b
[2026-03-01 10:09:05] apptainer works
[2026-03-01 10:09:05] Set ATHENA_PROC_NUMBER=3
[2026-03-01 10:09:05] Set ATHENA_CORE_NUMBER=3
[2026-03-01 10:09:05] Starting ATLAS job with PandaID=7033408748
[2026-03-01 10:09:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-01 11:15:27]  *** The last 200 lines of the pilot log: ***
[2026-03-01 11:15:27] 2026-03-01 10:14:57,265 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-01 11:15:27] 2026-03-01 10:14:57,265 | INFO     | collected zombie processes
[2026-03-01 11:15:27] 2026-03-01 10:14:57,265 | INFO     | will attempt to kill all subprocesses of pid=3593630
[2026-03-01 11:15:27] 2026-03-01 10:14:57,307 | INFO     | process IDs to be killed: [3593630] (in reverse order)
[2026-03-01 11:15:27] 2026-03-01 10:14:57,333 | WARNING  | found no corresponding commands to process id(s)
[2026-03-01 11:15:27] 2026-03-01 10:14:57,333 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-01 11:15:27] 2026-03-01 10:14:57,334 | INFO     | did not find any defunct processes belonging to 3593630
[2026-03-01 11:15:27] 2026-03-01 10:14:57,335 | INFO     | did not find any defunct processes belonging to 3593630
[2026-03-01 11:15:27] 2026-03-01 10:14:57,335 | INFO     | ready for new job
[2026-03-01 11:15:27] 2026-03-01 10:14:57,335 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-01 11:15:27] 2026-03-01 10:14:57,336 | INFO     | **************************************
[2026-03-01 11:15:27] 2026-03-01 10:14:57,336 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-01 11:15:27] 2026-03-01 10:14:57,336 | INFO     | **************************************
[2026-03-01 11:15:27] 2026-03-01 10:14:57,336 | INFO     | 
[2026-03-01 11:15:27] 2026-03-01 10:14:57,336 | INFO     | architecture information:
[2026-03-01 11:15:27] 2026-03-01 10:14:57,336 | INFO     | executing command: cat /etc/os-release
[2026-03-01 11:15:27] 2026-03-01 10:14:57,345 | INFO     | cat /etc/os-release:
[2026-03-01 11:15:27] NAME="CentOS Linux"
[2026-03-01 11:15:27] VERSION="7 (Core)"
[2026-03-01 11:15:27] ID="centos"
[2026-03-01 11:15:27] ID_LIKE="rhel fedora"
[2026-03-01 11:15:27] VERSION_ID="7"
[2026-03-01 11:15:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-01 11:15:27] ANSI_COLOR="0;31"
[2026-03-01 11:15:27] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-01 11:15:27] HOME_URL="https://www.centos.org/"
[2026-03-01 11:15:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-01 11:15:27] 
[2026-03-01 11:15:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-01 11:15:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-01 11:15:27] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-01 11:15:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-01 11:15:27] 
[2026-03-01 11:15:27] 2026-03-01 10:14:57,346 | INFO     | **************************************
[2026-03-01 11:15:27] 2026-03-01 10:14:57,849 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-01 11:15:27] 2026-03-01 10:14:57,862 | INFO     | sufficient remaining disk space (377584877568 B)
[2026-03-01 11:15:27] 2026-03-01 10:14:57,862 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-01 11:15:27] 2026-03-01 10:14:57,862 | INFO     | current server update state: UPDATING_FINAL
[2026-03-01 11:15:27] 2026-03-01 10:14:57,862 | INFO     | update_server=False
[2026-03-01 11:15:27] 2026-03-01 10:14:57,862 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-01 11:15:27] 2026-03-01 10:14:57,862 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-01 11:15:27] 2026-03-01 10:14:57,862 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-01 11:15:27] 2026-03-01 10:14:58,106 | INFO     | all payload control threads have been joined
[2026-03-01 11:15:27] 2026-03-01 10:14:58,582 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-01 11:15:27] 2026-03-01 10:14:58,583 | INFO     | aborting loop
[2026-03-01 11:15:27] 2026-03-01 10:14:58,813 | INFO     | all data control threads have been joined
[2026-03-01 11:15:27] 2026-03-01 10:14:58,868 | INFO     | [job] retrieve thread has finished
[2026-03-01 11:15:27] 2026-03-01 10:14:58,868 | INFO     | [job] queue monitor thread has finished
[2026-03-01 11:15:27] 2026-03-01 10:14:58,897 | INFO     | [payload] validate_pre thread has finished
[2026-03-01 11:15:27] 2026-03-01 10:14:58,906 | INFO     | [payload] failed_post thread has finished
[2026-03-01 11:15:27] 2026-03-01 10:14:58,914 | INFO     | all job control threads have been joined
[2026-03-01 11:15:27] 2026-03-01 10:14:58,963 | INFO     | [data] copytool_in thread has finished
[2026-03-01 11:15:27] 2026-03-01 10:14:59,112 | INFO     | [payload] control thread has finished
[2026-03-01 11:15:27] 2026-03-01 10:14:59,349 | INFO     | [payload] execute_payloads thread has finished
[2026-03-01 11:15:27] 2026-03-01 10:14:59,588 | INFO     | [job] job monitor thread has finished
[2026-03-01 11:15:27] 2026-03-01 10:14:59,819 | INFO     | [data] control thread has finished
[2026-03-01 11:15:27] 2026-03-01 10:14:59,869 | INFO     | [data] copytool_out thread has finished
[2026-03-01 11:15:27] 2026-03-01 10:14:59,879 | INFO     | [payload] validate_post thread has finished
[2026-03-01 11:15:27] 2026-03-01 10:14:59,889 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-01 11:15:27] 2026-03-01 10:14:59,919 | INFO     | [job] control thread has finished
[2026-03-01 11:15:27] 2026-03-01 10:15:00,264 | INFO     | [job] validate thread has finished
[2026-03-01 11:15:27] 2026-03-01 10:15:00,339 | INFO     | [job] create_data_payload thread has finished
[2026-03-01 11:15:27] 2026-03-01 10:15:03,896 | INFO     | [data] queue_monitor thread has finished
[2026-03-01 11:15:27] 2026-03-01 10:15:08,524 | INFO     | job.realtimelogging is not enabled
[2026-03-01 11:15:27] 2026-03-01 10:15:09,530 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-01 11:15:27] 2026-03-01 10:15:20,092 | INFO     | [monitor] cgroup control has ended
[2026-03-01 11:15:27] 2026-03-01 10:15:20,918 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140445707798336)>', '<ExcThread(monitor, started 140445212464896)>']
[2026-03-01 11:15:27] 2026-03-01 10:15:25,924 | INFO     | all workflow threads have been joined
[2026-03-01 11:15:27] 2026-03-01 10:15:25,924 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-01 11:15:27] 2026-03-01 10:15:25,925 | INFO     | traces error code: 0
[2026-03-01 11:15:27] 2026-03-01 10:15:25,925 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-01 11:15:27] 2026-03-01 10:15:27,590 | INFO     | PID=3589204 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-01 11:15:27] 2026-03-01 10:15:27,590 | INFO     | found 0 job(s) in 20 queues
[2026-03-01 11:15:27] 2026-03-01 10:15:27,590 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-01 11:15:27] 2026-03-01 10:15:27,590 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-01 11:15:27] 2026-03-01 10:15:27,590 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-01 11:15:27] 2026-03-01 10:15:27,590 | INFO     | [monitor] control thread has ended
[2026-03-01 11:15:27] 2026-03-01 10:15:27,638 [wrapper] ==== pilot stdout END ====
[2026-03-01 11:15:27] 2026-03-01 10:15:27,640 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-01 11:15:27] 2026-03-01 10:15:27,643 [wrapper] pilotpid: 3589204
[2026-03-01 11:15:27] 2026-03-01 10:15:27,645 [wrapper] Pilot exit status: 0
[2026-03-01 11:15:27] 2026-03-01 10:15:27,653 [wrapper] pandaids: 7033408748
[2026-03-01 11:15:27] 2026-03-01 10:15:27,669 [wrapper] cleanup supervisor_pilot 3598687 3589205
[2026-03-01 11:15:27] 2026-03-01 10:15:27,672 [wrapper] Test setup, not cleaning
[2026-03-01 11:15:27] 2026-03-01 10:15:27,674 [wrapper] apfmon messages muted
[2026-03-01 11:15:27] 2026-03-01 10:15:27,677 [wrapper] ==== wrapper stdout END ====
[2026-03-01 11:15:27] 2026-03-01 10:15:27,680 [wrapper] ==== wrapper stderr END ====
[2026-03-01 11:15:27]  *** Error codes and diagnostics ***
[2026-03-01 11:15:27]     "exeErrorCode": 0,
[2026-03-01 11:15:27]     "exeErrorDiag": "",
[2026-03-01 11:15:27]     "pilotErrorCode": 0,
[2026-03-01 11:15:27]     "pilotErrorDiag": "",
[2026-03-01 11:15:27]  *** Listing of results directory ***
[2026-03-01 11:15:27] total 327324
[2026-03-01 11:15:27] -rwx------ 1 boinc boinc     36322 Feb 28 14:54 runpilot2-wrapper.sh
[2026-03-01 11:15:27] -rw-r--r-- 1 boinc boinc    584627 Feb 28 14:58 pilot3.tar.gz
[2026-03-01 11:15:27] -rw-r--r-- 1 boinc boinc      5111 Feb 28 14:58 queuedata.json
[2026-03-01 11:15:27] -rw-r--r-- 1 boinc boinc       100 Mar  1 10:09 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-01 11:15:27] -rwxr-xr-x 1 boinc boinc      7986 Mar  1 10:09 run_atlas
[2026-03-01 11:15:27] -rw-r--r-- 1 boinc boinc       105 Mar  1 10:09 job.xml
[2026-03-01 11:15:27] -rw-r--r-- 2 boinc boinc 188064944 Mar  1 10:09 EVNT.48700904._000010.pool.root.1
[2026-03-01 11:15:27] drwxrwx--x 2 boinc boinc      4096 Mar  1 10:09 shared
[2026-03-01 11:15:27] -rw-r--r-- 2 boinc boinc    597939 Mar  1 10:09 input.tar.gz
[2026-03-01 11:15:27] -rw-r--r-- 2 boinc boinc     15845 Mar  1 10:09 start_atlas.sh
[2026-03-01 11:15:27] -rw-r--r-- 1 boinc boinc         0 Mar  1 10:09 boinc_setup_complete
[2026-03-01 11:15:27] -rw-r--r-- 1 boinc boinc      6449 Mar  1 10:09 init_data.xml
[2026-03-01 11:15:27] -rw-r--r-- 1 boinc boinc         0 Mar  1 10:09 boinc_lockfile
[2026-03-01 11:15:27] -rw-r--r-- 1 boinc boinc      2517 Mar  1 10:09 pandaJob.out
[2026-03-01 11:15:27] -rw------- 1 boinc boinc    998782 Mar  1 10:09 agis_schedconf.cvmfs.json
[2026-03-01 11:15:27] -rw------- 1 boinc boinc   1513015 Mar  1 10:09 agis_ddmendpoints.agis.ALL.json
[2026-03-01 11:15:27] -rw------- 1 boinc boinc       427 Mar  1 10:09 workernode_map.json
[2026-03-01 11:15:27] drwx------ 5 boinc boinc      4096 Mar  1 10:09 pilot3
[2026-03-01 11:15:27] -rw------- 1 boinc boinc        95 Mar  1 11:14 pilot_heartbeat.json
[2026-03-01 11:15:27] -rw------- 1 boinc boinc 141554589 Mar  1 11:14 HITS.48700906._000235.pool.root.1
[2026-03-01 11:15:27] -rw-r--r-- 1 boinc boinc       529 Mar  1 11:14 boinc_task_state.xml
[2026-03-01 11:15:27] -rw------- 1 boinc boinc      1014 Mar  1 11:14 memory_monitor_summary.json
[2026-03-01 11:15:27] -rw------- 1 boinc boinc    233389 Mar  1 11:14 log.48700906._000235.job.log.tgz.1
[2026-03-01 11:15:27] -rw------- 1 boinc boinc      6293 Mar  1 11:14 heartbeat.json
[2026-03-01 11:15:27] -rw-r--r-- 1 boinc boinc      8192 Mar  1 11:15 boinc_mmap_file
[2026-03-01 11:15:27] -rw-r--r-- 1 boinc boinc        27 Mar  1 11:15 wrapper_checkpoint.txt
[2026-03-01 11:15:27] -rw------- 1 boinc boinc       747 Mar  1 11:15 pilotlog.txt
[2026-03-01 11:15:27] -rw------- 1 boinc boinc    589846 Mar  1 11:15 log.48700906._000235.job.log.1
[2026-03-01 11:15:27] -rw------- 1 boinc boinc       357 Mar  1 11:15 output.list
[2026-03-01 11:15:27] -rw-r--r-- 1 boinc boinc       620 Mar  1 11:15 runtime_log
[2026-03-01 11:15:27] -rw------- 1 boinc boinc    839680 Mar  1 11:15 result.tar.gz
[2026-03-01 11:15:27] -rw-r--r-- 1 boinc boinc      8916 Mar  1 11:15 runtime_log.err
[2026-03-01 11:15:27] -rw------- 1 boinc boinc       661 Mar  1 11:15 iwyNDmgxZG9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmmR7KDmluBeFn.diag
[2026-03-01 11:15:27] -rw-r--r-- 1 boinc boinc     10510 Mar  1 11:15 stderr.txt
[2026-03-01 11:15:27] HITS file was successfully produced:
[2026-03-01 11:15:27] -rw------- 1 boinc boinc 141554589 Mar  1 11:14 shared/HITS.pool.root.1
[2026-03-01 11:15:27]  *** Contents of shared directory: ***
[2026-03-01 11:15:27] total 323328
[2026-03-01 11:15:27] -rw-r--r-- 2 boinc boinc 188064944 Mar  1 10:09 ATLAS.root_0
[2026-03-01 11:15:27] -rw-r--r-- 2 boinc boinc    597939 Mar  1 10:09 input.tar.gz
[2026-03-01 11:15:27] -rw-r--r-- 2 boinc boinc     15845 Mar  1 10:09 start_atlas.sh
[2026-03-01 11:15:27] -rw------- 1 boinc boinc 141554589 Mar  1 11:14 HITS.pool.root.1
[2026-03-01 11:15:27] -rw------- 1 boinc boinc    839680 Mar  1 11:15 result.tar.gz
11:15:29 (3585151): run_atlas exited; CPU time 11107.904671
11:15:29 (3585151): called boinc_finish(0)

</stderr_txt>
]]>

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