Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:29:18 (3571050): wrapper (7.7.26015): starting
08:29:18 (3571050): wrapper: running run_atlas (--nthreads 3)
[2026-03-01 08:29:18] Arguments: --nthreads 3
[2026-03-01 08:29:18] Threads: 3
[2026-03-01 08:29:18] Checking for CVMFS
[2026-03-01 08:29:18] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-01 08:29:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-01 08:29:19] Running cvmfs_config stat atlas.cern.ch
[2026-03-01 08:29:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-01 08:29:19] 2.9.2.0 2854294 5235 83144 156762 0 50 27049856 36864000 0 130560 0 2014207 99.980 214136 17459 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-01 08:29:19] CVMFS is ok
[2026-03-01 08:29:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-01 08:29:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-01 08:29:19] Further information can be found at the LHC@home message board.
[2026-03-01 08:29:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-01 08:29:19] Checking for apptainer binary...
[2026-03-01 08:29:19] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-01 08:29:19] Running /usr/bin/apptainer --version
[2026-03-01 08:29:19] apptainer version 1.4.1-1.1
[2026-03-01 08:29:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-01 08:29:19] atlasA223b
[2026-03-01 08:29:19] apptainer works
[2026-03-01 08:29:19] Set ATHENA_PROC_NUMBER=3
[2026-03-01 08:29:19] Set ATHENA_CORE_NUMBER=3
[2026-03-01 08:29:19] Starting ATLAS job with PandaID=7033279294
[2026-03-01 08:29:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-01 10:08:43]  *** The last 200 lines of the pilot log: ***
[2026-03-01 10:08:43] 2026-03-01 09:08:04,350 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-01 10:08:43] 2026-03-01 09:08:04,350 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-01 10:08:43] 2026-03-01 09:08:04,350 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-01 10:08:43] 2026-03-01 09:08:04,350 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-01 10:08:43] 2026-03-01 09:08:04,350 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-01 10:08:43] 2026-03-01 09:08:04,350 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-01 10:08:43] 2026-03-01 09:08:04,350 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-01 10:08:43] 2026-03-01 09:08:04,350 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-01 10:08:43] 2026-03-01 09:08:04,350 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-01 10:08:43] 2026-03-01 09:08:04,350 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-01 10:08:43] 2026-03-01 09:08:04,350 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-01 10:08:43] 2026-03-01 09:08:04,350 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-01 10:08:43] 2026-03-01 09:08:04,350 | INFO     | job 7033279294 has completed (purged errors)
[2026-03-01 10:08:43] 2026-03-01 09:08:04,350 | INFO     | overall cleanup function is called
[2026-03-01 10:08:43] 2026-03-01 09:08:05,356 | INFO     | --- collectZombieJob: --- 10, [3579513]
[2026-03-01 10:08:43] 2026-03-01 09:08:05,357 | INFO     | zombie collector waiting for pid 3579513
[2026-03-01 10:08:43] 2026-03-01 09:08:05,357 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-01 10:08:43] 2026-03-01 09:08:05,357 | INFO     | collected zombie processes
[2026-03-01 10:08:43] 2026-03-01 09:08:05,357 | INFO     | will attempt to kill all subprocesses of pid=3579513
[2026-03-01 10:08:43] 2026-03-01 09:08:05,400 | INFO     | process IDs to be killed: [3579513] (in reverse order)
[2026-03-01 10:08:43] 2026-03-01 09:08:05,425 | WARNING  | found no corresponding commands to process id(s)
[2026-03-01 10:08:43] 2026-03-01 09:08:05,425 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-01 10:08:43] 2026-03-01 09:08:05,426 | INFO     | did not find any defunct processes belonging to 3579513
[2026-03-01 10:08:43] 2026-03-01 09:08:05,427 | INFO     | did not find any defunct processes belonging to 3579513
[2026-03-01 10:08:43] 2026-03-01 09:08:05,427 | INFO     | ready for new job
[2026-03-01 10:08:43] 2026-03-01 09:08:05,427 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-01 10:08:43] 2026-03-01 09:08:05,428 | INFO     | **************************************
[2026-03-01 10:08:43] 2026-03-01 09:08:05,428 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-01 10:08:43] 2026-03-01 09:08:05,428 | INFO     | **************************************
[2026-03-01 10:08:43] 2026-03-01 09:08:05,428 | INFO     | 
[2026-03-01 10:08:43] 2026-03-01 09:08:05,429 | INFO     | architecture information:
[2026-03-01 10:08:43] 2026-03-01 09:08:05,429 | INFO     | executing command: cat /etc/os-release
[2026-03-01 10:08:43] 2026-03-01 09:08:05,438 | INFO     | cat /etc/os-release:
[2026-03-01 10:08:43] NAME="CentOS Linux"
[2026-03-01 10:08:43] VERSION="7 (Core)"
[2026-03-01 10:08:43] ID="centos"
[2026-03-01 10:08:43] ID_LIKE="rhel fedora"
[2026-03-01 10:08:43] VERSION_ID="7"
[2026-03-01 10:08:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-01 10:08:43] ANSI_COLOR="0;31"
[2026-03-01 10:08:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-01 10:08:43] HOME_URL="https://www.centos.org/"
[2026-03-01 10:08:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-01 10:08:43] 
[2026-03-01 10:08:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-01 10:08:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-01 10:08:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-01 10:08:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-01 10:08:43] 
[2026-03-01 10:08:43] 2026-03-01 09:08:05,438 | INFO     | **************************************
[2026-03-01 10:08:43] 2026-03-01 09:08:05,942 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-01 10:08:43] 2026-03-01 09:08:05,955 | INFO     | sufficient remaining disk space (377406619648 B)
[2026-03-01 10:08:43] 2026-03-01 09:08:05,956 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-01 10:08:43] 2026-03-01 09:08:05,956 | INFO     | current server update state: UPDATING_FINAL
[2026-03-01 10:08:43] 2026-03-01 09:08:05,956 | INFO     | update_server=False
[2026-03-01 10:08:43] 2026-03-01 09:08:05,956 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-01 10:08:43] 2026-03-01 09:08:05,956 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-01 10:08:43] 2026-03-01 09:08:05,956 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-01 10:08:43] 2026-03-01 09:08:05,956 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-01 10:08:43] 2026-03-01 09:08:06,077 | INFO     | all data control threads have been joined
[2026-03-01 10:08:43] 2026-03-01 09:08:06,961 | INFO     | [job] queue monitor thread has finished
[2026-03-01 10:08:43] 2026-03-01 09:08:06,962 | INFO     | [job] retrieve thread has finished
[2026-03-01 10:08:43] 2026-03-01 09:08:07,044 | INFO     | [data] copytool_in thread has finished
[2026-03-01 10:08:43] 2026-03-01 09:08:07,082 | INFO     | [data] control thread has finished
[2026-03-01 10:08:43] 2026-03-01 09:08:07,097 | WARNING  | process 3579513 can no longer be monitored (due to stat problems) - aborting
[2026-03-01 10:08:43] 2026-03-01 09:08:07,126 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-01 10:08:43] 2026-03-01 09:08:07,162 | INFO     | number of running child processes to parent process 3579513: 1
[2026-03-01 10:08:43] 2026-03-01 09:08:07,162 | INFO     | maximum number of monitored processes: 6
[2026-03-01 10:08:43] 2026-03-01 09:08:07,162 | INFO     | aborting job monitoring since job object (job id=7033279294) has expired
[2026-03-01 10:08:43] 2026-03-01 09:08:07,162 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-01 10:08:43] 2026-03-01 09:08:07,162 | INFO     | will abort loop
[2026-03-01 10:08:43] 2026-03-01 09:08:07,361 | INFO     | all payload control threads have been joined
[2026-03-01 10:08:43] 2026-03-01 09:08:07,391 | INFO     | all job control threads have been joined
[2026-03-01 10:08:43] 2026-03-01 09:08:07,582 | INFO     | [payload] failed_post thread has finished
[2026-03-01 10:08:43] 2026-03-01 09:08:07,962 | INFO     | [data] copytool_out thread has finished
[2026-03-01 10:08:43] 2026-03-01 09:08:08,109 | INFO     | [payload] execute_payloads thread has finished
[2026-03-01 10:08:43] 2026-03-01 09:08:08,168 | INFO     | [job] job monitor thread has finished
[2026-03-01 10:08:43] 2026-03-01 09:08:08,268 | INFO     | [job] validate thread has finished
[2026-03-01 10:08:43] 2026-03-01 09:08:08,367 | INFO     | [payload] control thread has finished
[2026-03-01 10:08:43] 2026-03-01 09:08:08,372 | INFO     | [payload] validate_pre thread has finished
[2026-03-01 10:08:43] 2026-03-01 09:08:08,372 | INFO     | [job] create_data_payload thread has finished
[2026-03-01 10:08:43] 2026-03-01 09:08:08,397 | INFO     | [job] control thread has finished
[2026-03-01 10:08:43] 2026-03-01 09:08:08,437 | INFO     | [payload] validate_post thread has finished
[2026-03-01 10:08:43] 2026-03-01 09:08:09,288 | INFO     | job.realtimelogging is not enabled
[2026-03-01 10:08:43] 2026-03-01 09:08:09,963 | INFO     | [data] queue_monitor thread has finished
[2026-03-01 10:08:43] 2026-03-01 09:08:10,294 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-01 10:08:43] 2026-03-01 09:08:36,866 | INFO     | [monitor] cgroup control has ended
[2026-03-01 10:08:43] 2026-03-01 09:08:37,080 | INFO     | PID=3575094 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-01 10:08:43] 2026-03-01 09:08:37,081 | INFO     | found 0 job(s) in 20 queues
[2026-03-01 10:08:43] 2026-03-01 09:08:37,081 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-01 10:08:43] 2026-03-01 09:08:37,081 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-01 10:08:43] 2026-03-01 09:08:38,777 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140501889222464)>', '<ExcThread(monitor, started 140501256759040)>']
[2026-03-01 10:08:43] 2026-03-01 09:08:39,091 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-01 10:08:43] 2026-03-01 09:08:39,092 | INFO     | [monitor] control thread has ended
[2026-03-01 10:08:43] 2026-03-01 09:08:43,803 | INFO     | all workflow threads have been joined
[2026-03-01 10:08:43] 2026-03-01 09:08:43,803 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-01 10:08:43] 2026-03-01 09:08:43,803 | INFO     | traces error code: 0
[2026-03-01 10:08:43] 2026-03-01 09:08:43,803 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-01 10:08:43] 2026-03-01 09:08:43,854 [wrapper] ==== pilot stdout END ====
[2026-03-01 10:08:43] 2026-03-01 09:08:43,856 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-01 10:08:43] 2026-03-01 09:08:43,859 [wrapper] pilotpid: 3575094
[2026-03-01 10:08:43] 2026-03-01 09:08:43,861 [wrapper] Pilot exit status: 0
[2026-03-01 10:08:43] 2026-03-01 09:08:43,869 [wrapper] pandaids: 7033279294
[2026-03-01 10:08:43] 2026-03-01 09:08:43,886 [wrapper] cleanup supervisor_pilot 3584831 3575095
[2026-03-01 10:08:43] 2026-03-01 09:08:43,889 [wrapper] Test setup, not cleaning
[2026-03-01 10:08:43] 2026-03-01 09:08:43,892 [wrapper] apfmon messages muted
[2026-03-01 10:08:43] 2026-03-01 09:08:43,894 [wrapper] ==== wrapper stdout END ====
[2026-03-01 10:08:43] 2026-03-01 09:08:43,897 [wrapper] ==== wrapper stderr END ====
[2026-03-01 10:08:43]  *** Error codes and diagnostics ***
[2026-03-01 10:08:43]     "exeErrorCode": 0,
[2026-03-01 10:08:43]     "exeErrorDiag": "",
[2026-03-01 10:08:43]     "pilotErrorCode": 0,
[2026-03-01 10:08:43]     "pilotErrorDiag": "",
[2026-03-01 10:08:43]  *** Listing of results directory ***
[2026-03-01 10:08:43] total 501904
[2026-03-01 10:08:43] -rw-r--r-- 1 boinc boinc    584627 Feb 28 14:52 pilot3.tar.gz
[2026-03-01 10:08:43] -rwx------ 1 boinc boinc     36322 Feb 28 14:52 runpilot2-wrapper.sh
[2026-03-01 10:08:43] -rw-r--r-- 1 boinc boinc      5111 Feb 28 14:53 queuedata.json
[2026-03-01 10:08:43] -rw-r--r-- 1 boinc boinc       100 Mar  1 08:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-01 10:08:43] -rwxr-xr-x 1 boinc boinc      7986 Mar  1 08:29 run_atlas
[2026-03-01 10:08:43] -rw-r--r-- 1 boinc boinc       105 Mar  1 08:29 job.xml
[2026-03-01 10:08:43] -rw-r--r-- 2 boinc boinc 286574759 Mar  1 08:29 EVNT.48220101._000026.pool.root.1
[2026-03-01 10:08:43] -rw-r--r-- 2 boinc boinc    597985 Mar  1 08:29 input.tar.gz
[2026-03-01 10:08:43] -rw-r--r-- 2 boinc boinc     15845 Mar  1 08:29 start_atlas.sh
[2026-03-01 10:08:43] drwxrwx--x 2 boinc boinc      4096 Mar  1 08:29 shared
[2026-03-01 10:08:43] -rw-r--r-- 1 boinc boinc         0 Mar  1 08:29 boinc_setup_complete
[2026-03-01 10:08:43] -rw-r--r-- 1 boinc boinc      6449 Mar  1 08:29 init_data.xml
[2026-03-01 10:08:43] -rw-r--r-- 1 boinc boinc         0 Mar  1 08:29 boinc_lockfile
[2026-03-01 10:08:43] -rw-r--r-- 1 boinc boinc      2577 Mar  1 08:29 pandaJob.out
[2026-03-01 10:08:43] -rw------- 1 boinc boinc    998782 Mar  1 08:29 agis_schedconf.cvmfs.json
[2026-03-01 10:08:43] -rw------- 1 boinc boinc   1513015 Mar  1 08:29 agis_ddmendpoints.agis.ALL.json
[2026-03-01 10:08:43] -rw------- 1 boinc boinc       427 Mar  1 08:29 workernode_map.json
[2026-03-01 10:08:43] drwx------ 5 boinc boinc      4096 Mar  1 08:29 pilot3
[2026-03-01 10:08:43] -rw------- 1 boinc boinc 221177222 Mar  1 10:07 HITS.48838432._003905.pool.root.1
[2026-03-01 10:08:43] -rw-r--r-- 1 boinc boinc       529 Mar  1 10:07 boinc_task_state.xml
[2026-03-01 10:08:43] -rw------- 1 boinc boinc        95 Mar  1 10:07 pilot_heartbeat.json
[2026-03-01 10:08:43] -rw------- 1 boinc boinc      1014 Mar  1 10:07 memory_monitor_summary.json
[2026-03-01 10:08:43] -rw------- 1 boinc boinc    278280 Mar  1 10:08 log.48838432._003905.job.log.tgz.1
[2026-03-01 10:08:43] -rw------- 1 boinc boinc      6307 Mar  1 10:08 heartbeat.json
[2026-03-01 10:08:43] -rw-r--r-- 1 boinc boinc        27 Mar  1 10:08 wrapper_checkpoint.txt
[2026-03-01 10:08:43] -rw-r--r-- 1 boinc boinc      8192 Mar  1 10:08 boinc_mmap_file
[2026-03-01 10:08:43] -rw------- 1 boinc boinc      5344 Mar  1 10:08 pilotlog.txt
[2026-03-01 10:08:43] -rw------- 1 boinc boinc    858749 Mar  1 10:08 log.48838432._003905.job.log.1
[2026-03-01 10:08:43] -rw------- 1 boinc boinc       357 Mar  1 10:08 output.list
[2026-03-01 10:08:43] -rw-r--r-- 1 boinc boinc       620 Mar  1 10:08 runtime_log
[2026-03-01 10:08:43] -rw------- 1 boinc boinc   1157120 Mar  1 10:08 result.tar.gz
[2026-03-01 10:08:43] -rw-r--r-- 1 boinc boinc      8916 Mar  1 10:08 runtime_log.err
[2026-03-01 10:08:43] -rw------- 1 boinc boinc       661 Mar  1 10:08 5eOLDmWvZG9n9Rq4apOajLDm4fhM0noT9bVooX4SDm8f5KDmoD2X7n.diag
[2026-03-01 10:08:43] -rw-r--r-- 1 boinc boinc     12764 Mar  1 10:08 stderr.txt
[2026-03-01 10:08:43] HITS file was successfully produced:
[2026-03-01 10:08:43] -rw------- 1 boinc boinc 221177222 Mar  1 10:07 shared/HITS.pool.root.1
[2026-03-01 10:08:43]  *** Contents of shared directory: ***
[2026-03-01 10:08:43] total 497596
[2026-03-01 10:08:43] -rw-r--r-- 2 boinc boinc 286574759 Mar  1 08:29 ATLAS.root_0
[2026-03-01 10:08:43] -rw-r--r-- 2 boinc boinc    597985 Mar  1 08:29 input.tar.gz
[2026-03-01 10:08:43] -rw-r--r-- 2 boinc boinc     15845 Mar  1 08:29 start_atlas.sh
[2026-03-01 10:08:43] -rw------- 1 boinc boinc 221177222 Mar  1 10:07 HITS.pool.root.1
[2026-03-01 10:08:43] -rw------- 1 boinc boinc   1157120 Mar  1 10:08 result.tar.gz
10:08:45 (3571050): run_atlas exited; CPU time 17058.799549
10:08:45 (3571050): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN