Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
2026-02-28 15:20:17 (3453540): vboxwrapper version 26210
2026-02-28 15:20:17 (3453540): BOINC client version: 8.2.8
2026-02-28 15:20:17 (3453540): Detected: VirtualBox VboxManage Interface (Version: 7.2.2)
2026-02-28 15:20:17 (3453540): Successfully copied 'init_data.xml' to the shared directory.
2026-02-28 15:20:17 (3453540): Create VM. (boinc_7d7eee44b57626a6, slot#5)
2026-02-28 15:20:17 (3453540): Setting Memory Size for VM. (4800MB)
2026-02-28 15:20:17 (3453540): Setting CPU Count for VM. (8)
2026-02-28 15:20:18 (3453540): Setting Chipset Options for VM.
2026-02-28 15:20:18 (3453540): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2026-02-28 15:20:18 (3453540): Setting Boot Options for VM.
2026-02-28 15:20:18 (3453540): Setting Network Configuration for NAT. (Driver: virtio)
2026-02-28 15:20:18 (3453540): Enabling VM Network Access.
2026-02-28 15:20:18 (3453540): Disabling USB Support for VM.
2026-02-28 15:20:18 (3453540): Disabling COM Port Support for VM.
2026-02-28 15:20:18 (3453540): Disabling LPT Port Support for VM.
2026-02-28 15:20:19 (3453540): Disabling Audio Support for VM.
2026-02-28 15:20:19 (3453540): Disabling Clipboard Support for VM.
2026-02-28 15:20:19 (3453540): Disabling Drag and Drop Support for VM.
2026-02-28 15:20:19 (3453540): Adding storage controller(s) to VM.
2026-02-28 15:20:19 (3453540): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2026-02-28 15:20:20 (3453540): Adding VirtualBox Guest Additions to VM.
2026-02-28 15:20:20 (3453540): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2026-02-28 15:20:20 (3453540): forwarding host port 43955 to guest port 80
2026-02-28 15:20:20 (3453540): Enabling remote desktop for VM.
2026-02-28 15:20:20 (3453540): Required extension pack not installed, remote desktop not enabled.
2026-02-28 15:20:20 (3453540): Enabling shared directory for VM.
2026-02-28 15:20:20 (3453540): Starting VM using VBoxManage interface. (boinc_7d7eee44b57626a6, slot#5)
2026-02-28 15:20:22 (3453540): Successfully started VM. (PID = '3454199')
2026-02-28 15:20:22 (3453540): Reporting VM Process ID to BOINC.
2026-02-28 15:20:22 (3453540): Guest Log: BIOS: VirtualBox 7.2.2
2026-02-28 15:20:22 (3453540): Guest Log: CPUID EDX: 0x178bfbff
2026-02-28 15:20:22 (3453540): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2026-02-28 15:20:22 (3453540): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2026-02-28 15:20:22 (3453540): VM state change detected. (old = 'poweredoff', new = 'running')
2026-02-28 15:20:22 (3453540): Detected: Web Application Enabled (http://localhost:43955)
2026-02-28 15:20:22 (3453540): Preference change detected
2026-02-28 15:20:22 (3453540): Setting CPU throttle for VM. (100%)
2026-02-28 15:20:22 (3453540): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2026-02-28 15:20:24 (3453540): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2026-02-28 15:20:24 (3453540): Guest Log: BIOS: Booting from Hard Disk...
2026-02-28 15:20:27 (3453540): Guest Log: BIOS: KBD: unsupported int 16h function 03
2026-02-28 15:20:27 (3453540): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2026-02-28 15:20:27 (3453540): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2026-02-28 15:20:27 (3453540): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2026-02-28 15:20:27 (3453540): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2026-02-28 15:20:27 (3453540): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2026-02-28 15:20:27 (3453540): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2026-02-28 15:20:27 (3453540): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2026-02-28 15:20:27 (3453540): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2026-02-28 15:20:27 (3453540): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2026-02-28 15:20:27 (3453540): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2026-02-28 15:20:27 (3453540): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2026-02-28 15:20:27 (3453540): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2026-02-28 15:20:27 (3453540): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2026-02-28 15:20:27 (3453540): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2026-02-28 15:20:27 (3453540): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2026-02-28 15:20:27 (3453540): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2026-02-28 15:20:27 (3453540): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2026-02-28 15:20:27 (3453540): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2026-02-28 15:20:27 (3453540): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2026-02-28 15:20:27 (3453540): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2026-02-28 15:20:27 (3453540): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2026-02-28 15:20:27 (3453540): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2026-02-28 15:20:27 (3453540): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2026-02-28 15:20:27 (3453540): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2026-02-28 15:20:27 (3453540): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2026-02-28 15:20:27 (3453540): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2026-02-28 15:20:27 (3453540): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2026-02-28 15:20:27 (3453540): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2026-02-28 15:20:27 (3453540): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2026-02-28 15:20:27 (3453540): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2026-02-28 15:20:27 (3453540): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2026-02-28 15:20:37 (3453540): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2026-02-28 15:20:37 (3453540): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2026-02-28 15:20:46 (3453540): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2026-02-28 15:20:46 (3453540): Guest Log: 00:00:00.000207 main     Log opened 2026-02-28T21:20:43.997823000Z
2026-02-28 15:20:46 (3453540): Guest Log: 00:00:00.000392 main     OS Product: Linux
2026-02-28 15:20:46 (3453540): Guest Log: 00:00:00.000432 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2026-02-28 15:20:46 (3453540): Guest Log: 00:00:00.000461 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2026-02-28 15:20:46 (3453540): Guest Log: 00:00:00.000490 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2026-02-28 15:20:46 (3453540): Guest Log: 00:00:00.000491 main     Process ID: 1372
2026-02-28 15:20:46 (3453540): Guest Log: 00:00:00.000492 main     Package type: LINUX_64BITS_GENERIC
2026-02-28 15:20:46 (3453540): Guest Log: 00:00:00.001367 main     5.2.32 r132073 started. Verbose level = 0
2026-02-28 15:20:46 (3453540): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2026-02-28 15:20:46 (3453540): Guest Log: [INFO] Mounting shared directory
2026-02-28 15:20:46 (3453540): Guest Log: [INFO] Checking for init_data.xml
2026-02-28 15:20:50 (3453540): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2026-02-28 15:20:50 (3453540): Guest Log: [INFO] Detected branch: prod
2026-02-28 15:20:50 (3453540): Guest Log: This is the prod version of the ATLAS job wrapper
2026-02-28 15:20:50 (3453540): Guest Log: Copying input files
2026-02-28 15:20:52 (3453540): Guest Log: Copied input files into RunAtlas.
2026-02-28 15:20:52 (3453540): Guest Log: This VM did not configure a local http proxy via BOINC.
2026-02-28 15:20:52 (3453540): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2026-02-28 15:20:52 (3453540): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2026-02-28 15:20:52 (3453540): Guest Log: Further information can be found at the LHC@home message board.
2026-02-28 15:21:00 (3453540): Guest Log: Running cvmfs_config stat atlas.cern.ch
2026-02-28 15:21:01 (3453540): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2026-02-28 15:21:01 (3453540): Guest Log: 2.6.3.0 1649 0 32180 156745 4 1 3117743 4096001 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2026-02-28 15:21:03 (3453540): Guest Log: copied the webapp to /var/www
2026-02-28 15:21:03 (3453540): Guest Log: ATHENA_PROC_NUMBER=8
2026-02-28 15:21:03 (3453540): Guest Log: ATHENA_CORE_NUMBER=8
2026-02-28 15:21:04 (3453540): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2026-02-28 15:21:04 (3453540): Guest Log:  *** Starting ATLAS job. (PandaID=7033007567 taskID=48838551) ***
2026-02-28 16:20:26 (3453540): VM state change detected. (old = 'running', new = 'paused')
2026-02-28 21:56:02 (3453540): VM state change detected. (old = 'paused', new = 'running')
2026-02-28 21:56:11 (3453540): Guest Log: 00:59:51.124789 timesync vgsvcTimeSyncWorker: Radical host time change: 20 145 780 000 000ns (HostNow=1 772 337 370 903 000 000 ns HostLast=1 772 317 225 123 000 000 ns)
2026-02-28 21:56:21 (3453540): Guest Log: 01:00:01.126151 timesync vgsvcTimeSyncWorker: Radical guest time change: 20 145 801 457 000ns (GuestNow=1 772 337 380 913 947 000 ns GuestLast=1 772 317 235 112 490 000 ns fSetTimeLastLoop=true )
2026-02-28 22:35:00 (3453540): Status Report: Elapsed Time: '6000.000000'
2026-02-28 22:35:00 (3453540): Status Report: CPU Time: '40482.930000'
2026-02-28 22:56:51 (3453540): VM state change detected. (old = 'running', new = 'paused')
2026-03-01 01:09:59 (3453540): VM state change detected. (old = 'paused', new = 'running')
2026-03-01 01:10:00 (3453540): Guest Log: 02:00:31.712345 timesync vgsvcTimeSyncWorker: Radical host time change: 7 998 159 000 000ns (HostNow=1 772 348 999 700 000 000 ns HostLast=1 772 341 001 541 000 000 ns)
2026-03-01 01:10:10 (3453540): Guest Log: 02:00:41.712916 timesync vgsvcTimeSyncWorker: Radical guest time change: 7 998 200 912 000ns (GuestNow=1 772 349 009 700 664 000 ns GuestLast=1 772 341 011 499 752 000 ns fSetTimeLastLoop=true )
2026-03-01 01:34:31 (3453540): Guest Log:  *** Job finished ***
2026-03-01 01:34:31 (3453540): Guest Log:  *** The last 20 lines of the pilot log: ***
2026-03-01 01:34:31 (3453540): Guest Log: 2026-03-01 07:34:16,103 | INFO     | all workflow threads have been joined
2026-03-01 01:34:31 (3453540): Guest Log: 2026-03-01 07:34:16,103 | INFO     | end of generic workflow (traces error code: 0)
2026-03-01 01:34:31 (3453540): Guest Log: 2026-03-01 07:34:16,103 | INFO     | traces error code: 0
2026-03-01 01:34:31 (3453540): Guest Log: 2026-03-01 07:34:16,104 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2026-03-01 01:34:31 (3453540): Guest Log: 2026-03-01 07:34:31,089 | INFO     | PID=6085 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2026-03-01 01:34:31 (3453540): Guest Log: 2026-03-01 07:34:31,089 | INFO     | found 0 job(s) in 20 queues
2026-03-01 01:34:31 (3453540): Guest Log: 2026-03-01 07:34:31,090 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2026-03-01 01:34:31 (3453540): Guest Log: 2026-03-01 07:34:31,090 | WARNING  | will wait for a maximum of 300 s for threads to finish
2026-03-01 01:34:31 (3453540): Guest Log: 2026-03-01 07:34:31,090 | WARNING  | job_aborted has been set - aborting pilot monitoring
2026-03-01 01:34:31 (3453540): Guest Log: 2026-03-01 07:34:31,090 | INFO     | [monitor] control thread has ended
2026-03-01 01:34:31 (3453540): Guest Log: 2026-03-01 07:34:31,167 [wrapper] ==== pilot stdout END ====
2026-03-01 01:34:31 (3453540): Guest Log: 2026-03-01 07:34:31,173 [wrapper] ==== wrapper stdout RESUME ====
2026-03-01 01:34:31 (3453540): Guest Log: 2026-03-01 07:34:31,178 [wrapper] pilotpid: 6085
2026-03-01 01:34:31 (3453540): Guest Log: 2026-03-01 07:34:31,182 [wrapper] Pilot exit status: 0
2026-03-01 01:34:31 (3453540): Guest Log: 2026-03-01 07:34:31,275 [wrapper] pandaids: 7033007567
2026-03-01 01:34:31 (3453540): Guest Log: 2026-03-01 07:34:31,306 [wrapper] cleanup supervisor_pilot 26710 6086
2026-03-01 01:34:31 (3453540): Guest Log: 2026-03-01 07:34:31,314 [wrapper] Test setup, not cleaning
2026-03-01 01:34:31 (3453540): Guest Log: 2026-03-01 07:34:31,320 [wrapper] apfmon messages muted
2026-03-01 01:34:31 (3453540): Guest Log: 2026-03-01 07:34:31,325 [wrapper] ==== wrapper stdout END ====
2026-03-01 01:34:31 (3453540): Guest Log: 2026-03-01 07:34:31,329 [wrapper] ==== wrapper stderr END ====
2026-03-01 01:34:31 (3453540): Guest Log:  *** Error codes and diagnostics ***
2026-03-01 01:34:31 (3453540): Guest Log:     "exeErrorCode": 0,
2026-03-01 01:34:31 (3453540): Guest Log:     "exeErrorDiag": "",
2026-03-01 01:34:31 (3453540): Guest Log:     "pilotErrorCode": 0,
2026-03-01 01:34:31 (3453540): Guest Log:     "pilotErrorDiag": "",
2026-03-01 01:34:31 (3453540): Guest Log:  *** Listing of results directory ***
2026-03-01 01:34:31 (3453540): Guest Log: total 209372
2026-03-01 01:34:31 (3453540): Guest Log: -rw-r--r--. 1 atlas atlas    584627 Feb 28 12:40 pilot3.tar.gz
2026-03-01 01:34:31 (3453540): Guest Log: -rwx------. 1 atlas atlas     36322 Feb 28 12:44 runpilot2-wrapper.sh
2026-03-01 01:34:31 (3453540): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Feb 28 12:47 queuedata.json
2026-03-01 01:34:31 (3453540): Guest Log: -rw-r--r--. 1 atlas atlas    597953 Feb 28 21:20 input.tar.gz
2026-03-01 01:34:31 (3453540): Guest Log: -rw-r--r--. 1 atlas atlas      8863 Feb 28 21:20 init_data.xml
2026-03-01 01:34:31 (3453540): Guest Log: -rw-r--r--. 1 atlas atlas     15845 Feb 28 21:20 start_atlas.sh
2026-03-01 01:34:31 (3453540): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Feb 28 21:20 EVNT.48343723._000057.pool.root.1 -> /data/./ATLAS.root_0
2026-03-01 01:34:31 (3453540): Guest Log: -rw-r--r--. 1 atlas atlas      2552 Feb 28 21:21 pandaJob.out
2026-03-01 01:34:31 (3453540): Guest Log: -rw-------. 1 atlas atlas    998790 Feb 28 21:22 agis_schedconf.cvmfs.json
2026-03-01 01:34:31 (3453540): Guest Log: -rw-------. 1 atlas atlas       426 Feb 28 21:23 workernode_map.json
2026-03-01 01:34:31 (3453540): Guest Log: drwx------. 5 atlas atlas      4096 Feb 28 21:23 pilot3
2026-03-01 01:34:31 (3453540): Guest Log: -rw-------. 1 atlas atlas 207348803 Mar  1 07:33 HITS.48838551._001444.pool.root.1
2026-03-01 01:34:31 (3453540): Guest Log: -rw-------. 1 atlas atlas      1031 Mar  1 07:33 memory_monitor_summary.json
2026-03-01 01:34:31 (3453540): Guest Log: -rw-------. 1 atlas atlas   1513015 Mar  1 07:33 agis_ddmendpoints.agis.ALL.json
2026-03-01 01:34:31 (3453540): Guest Log: -rw-------. 1 atlas atlas    391510 Mar  1 07:33 log.48838551._001444.job.log.tgz.1
2026-03-01 01:34:31 (3453540): Guest Log: -rw-------. 1 atlas atlas      6370 Mar  1 07:33 heartbeat.json
2026-03-01 01:34:31 (3453540): Guest Log: -rw-------. 1 atlas atlas        98 Mar  1 07:34 pilot_heartbeat.json
2026-03-01 01:34:31 (3453540): Guest Log: -rw-------. 1 atlas atlas       744 Mar  1 07:34 pilotlog.txt
2026-03-01 01:34:31 (3453540): Guest Log: -rw-------. 1 atlas atlas   1204143 Mar  1 07:34 log.48838551._001444.job.log.1
2026-03-01 01:34:31 (3453540): Guest Log: -rw-------. 1 atlas atlas       357 Mar  1 07:34 output.list
2026-03-01 01:34:31 (3453540): Guest Log: -rw-r--r--. 1 atlas atlas       620 Mar  1 07:34 runtime_log
2026-03-01 01:34:31 (3453540): Guest Log: -rw-------. 1 atlas atlas   1617920 Mar  1 07:34 result.tar.gz
2026-03-01 01:34:31 (3453540): Guest Log: -rw-r--r--. 1 atlas atlas      8740 Mar  1 07:34 runtime_log.err
2026-03-01 01:34:31 (3453540): Guest Log: -rw-------. 1 atlas atlas       653 Mar  1 07:34 khsKDmQrYG9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmtB7KDmLGsBOn.diag
2026-03-01 01:34:31 (3453540): Guest Log: Looking for outputfile HITS.48838551._001444.pool.root.1
2026-03-01 01:34:31 (3453540): Guest Log: HITS file was successfully produced
2026-03-01 01:34:31 (3453540): Guest Log: -rw-------. 1 atlas atlas 207348803 Mar  1 07:33 /home/atlas/RunAtlas/HITS.48838551._001444.pool.root.1
2026-03-01 01:34:31 (3453540): Guest Log: Successfully finished the ATLAS job!
2026-03-01 01:34:31 (3453540): Guest Log: Copying the results back to the shared directory!
2026-03-01 01:34:31 (3453540): Guest Log:  *** Contents of shared directory: ***
2026-03-01 01:34:31 (3453540): Guest Log: total 266756
2026-03-01 01:34:31 (3453540): Guest Log: -rw-r--r--. 1 root root 270907385 Feb 28 21:20 ATLAS.root_0
2026-03-01 01:34:31 (3453540): Guest Log: -rw-r--r--. 1 root root      8863 Feb 28 21:20 init_data.xml
2026-03-01 01:34:31 (3453540): Guest Log: -rw-r--r--. 1 root root    597953 Feb 28 21:20 input.tar.gz
2026-03-01 01:34:31 (3453540): Guest Log: -rw-r--r--. 1 root root   1617920 Mar  1 07:34 result.tar.gz
2026-03-01 01:34:31 (3453540): Guest Log: -rw-r--r--. 1 root root     15845 Feb 28 21:20 start_atlas.sh
2026-03-01 01:34:31 (3453540): Guest Log:  *** Success! Shutting down the machine. ***
2026-03-01 01:34:31 (3453540): VM Completion File Detected.
2026-03-01 01:34:31 (3453540): Powering off VM.
2026-03-01 01:34:32 (3453540): Successfully stopped VM.
2026-03-01 01:34:32 (3453540): Deregistering VM. (boinc_7d7eee44b57626a6, slot#5)
2026-03-01 01:34:32 (3453540): Removing network bandwidth throttle group from VM.
2026-03-01 01:34:32 (3453540): Removing VM from VirtualBox.
2026-03-01 01:34:37 (3453540): called boinc_finish(0)

</stderr_txt>
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