Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:29:58 (627594): wrapper (7.7.26015): starting
16:29:58 (627594): wrapper: running run_atlas (--nthreads 8)
[2026-02-28 16:29:58] Arguments: --nthreads 8
[2026-02-28 16:29:58] Threads: 8
[2026-02-28 16:29:58] Checking for CVMFS
[2026-02-28 16:29:59] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-28 16:29:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-28 16:29:59] Running cvmfs_config stat atlas.cern.ch
[2026-02-28 16:30:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-28 16:30:01] 2.13.3.0 11596 47881 351036 156745 1 357 36023588 40960001 22596 16776704 0 45934252 99.515 61256261 11429 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-02-28 16:30:01] CVMFS is ok
[2026-02-28 16:30:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-28 16:30:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-28 16:30:02] Further information can be found at the LHC@home message board.
[2026-02-28 16:30:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-28 16:30:02] Checking for apptainer binary...
[2026-02-28 16:30:02] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-28 16:30:02] Running /usr/bin/apptainer --version
[2026-02-28 16:30:02] apptainer version 1.4.5-2.el9
[2026-02-28 16:30:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-28 16:30:05] c7-10-13.aglt2.org
[2026-02-28 16:30:05] apptainer works
[2026-02-28 16:30:06] Set ATHENA_PROC_NUMBER=8
[2026-02-28 16:30:06] Set ATHENA_CORE_NUMBER=8
[2026-02-28 16:30:06] Starting ATLAS job with PandaID=7033545416
[2026-02-28 16:30:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-01 10:41:07]  *** The last 200 lines of the pilot log: ***
[2026-03-01 10:41:08] 2026-03-01 15:40:13,133 | INFO     | sum of deviations: 1382188775224.1125
[2026-03-01 10:41:08] 2026-03-01 15:40:13,134 | INFO     | mean x: 1772347038.8322399
[2026-03-01 10:41:08] 2026-03-01 15:40:13,134 | INFO     | mean y: 2459949.8106841613
[2026-03-01 10:41:08] 2026-03-01 15:40:13,134 | INFO     | intersect: -6501028690.561066
[2026-03-01 10:41:08] 2026-03-01 15:40:13,143 | INFO     | chi2: 9.973981971965815
[2026-03-01 10:41:08] 2026-03-01 15:40:13,154 | INFO     | sum of square deviations: 371407399065.96606
[2026-03-01 10:41:08] 2026-03-01 15:40:13,497 | INFO     | monitor loop #3349: job 0:7033545416 is in state 'finished'
[2026-03-01 10:41:08] 2026-03-01 15:40:13,497 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-01 10:41:08] 2026-03-01 15:40:13,602 | INFO     | sum of deviations: 1509328568384.3079
[2026-03-01 10:41:08] 2026-03-01 15:40:13,602 | INFO     | mean x: 1772346886.338983
[2026-03-01 10:41:08] 2026-03-01 15:40:13,602 | INFO     | mean y: 2463617.6158192093
[2026-03-01 10:41:08] 2026-03-01 15:40:13,603 | INFO     | intersect: -7200014834.256067
[2026-03-01 10:41:08] 2026-03-01 15:40:13,647 | INFO     | chi2: 8.607793641016935
[2026-03-01 10:41:08] 2026-03-01 15:40:13,647 | INFO     | current chi2=8.607793641016935 (change=13.697521559482148 %)
[2026-03-01 10:41:08] 2026-03-01 15:40:13,647 | INFO     | right removable region: 1061
[2026-03-01 10:41:08] 2026-03-01 15:40:13,675 | INFO     | sum of square deviations: 371406336318.60645
[2026-03-01 10:41:08] 2026-03-01 15:40:13,961 | INFO     | time since job start (65233s) is within the limit (349056.0s)
[2026-03-01 10:41:08] 2026-03-01 15:40:14,048 | INFO     | sum of deviations: 1030799916127.1558
[2026-03-01 10:41:08] 2026-03-01 15:40:14,049 | INFO     | mean x: 1772347191.3408663
[2026-03-01 10:41:08] 2026-03-01 15:40:14,049 | INFO     | mean y: 2470113.438794727
[2026-03-01 10:41:08] 2026-03-01 15:40:14,049 | INFO     | intersect: -4916496413.333518
[2026-03-01 10:41:08] 2026-03-01 15:40:14,053 | INFO     | chi2: 5.953781670910102
[2026-03-01 10:41:08] 2026-03-01 15:40:14,053 | INFO     | current chi2=5.953781670910102 (change=40.30687354714914 %)
[2026-03-01 10:41:08] 2026-03-01 15:40:14,056 | INFO     | sum of square deviations: 366184646240.4775
[2026-03-01 10:41:08] 2026-03-01 15:40:14,161 | INFO     | sum of deviations: 761081360713.5892
[2026-03-01 10:41:08] 2026-03-01 15:40:14,161 | INFO     | mean x: 1772347343.8476822
[2026-03-01 10:41:08] 2026-03-01 15:40:14,162 | INFO     | mean y: 2477989.3017975404
[2026-03-01 10:41:08] 2026-03-01 15:40:14,162 | INFO     | intersect: -3681184179.392386
[2026-03-01 10:41:08] 2026-03-01 15:40:14,166 | INFO     | chi2: 3.6780187871646914
[2026-03-01 10:41:08] 2026-03-01 15:40:14,166 | INFO     | current chi2=3.6780187871646914 (change=38.223821589976694 %)
[2026-03-01 10:41:08] 2026-03-01 15:40:14,169 | INFO     | sum of square deviations: 361012055029.03784
[2026-03-01 10:41:08] 2026-03-01 15:40:14,273 | INFO     | sum of deviations: 557407705169.338
[2026-03-01 10:41:08] 2026-03-01 15:40:14,274 | INFO     | mean x: 1772347496.3555133
[2026-03-01 10:41:08] 2026-03-01 15:40:14,274 | INFO     | mean y: 2483992.614068441
[2026-03-01 10:41:08] 2026-03-01 15:40:14,274 | INFO     | intersect: -2734045541.3558855
[2026-03-01 10:41:08] 2026-03-01 15:40:14,278 | INFO     | chi2: 2.40476103734061
[2026-03-01 10:41:08] 2026-03-01 15:40:14,278 | INFO     | current chi2=2.40476103734061 (change=34.61803279165982 %)
[2026-03-01 10:41:08] 2026-03-01 15:40:14,281 | INFO     | sum of square deviations: 355888651906.36096
[2026-03-01 10:41:08] 2026-03-01 15:40:14,437 | INFO     | sum of deviations: 458976588495.35547
[2026-03-01 10:41:08] 2026-03-01 15:40:14,437 | INFO     | mean x: 1772347648.8595989
[2026-03-01 10:41:08] 2026-03-01 15:40:14,438 | INFO     | mean y: 2486919.7507163323
[2026-03-01 10:41:08] 2026-03-01 15:40:14,438 | INFO     | intersect: -2283245072.9495645
[2026-03-01 10:41:08] 2026-03-01 15:40:14,442 | INFO     | chi2: 2.0902908231592408
[2026-03-01 10:41:08] 2026-03-01 15:40:14,442 | INFO     | current chi2=2.0902908231592408 (change=13.076983920578533 %)
[2026-03-01 10:41:08] 2026-03-01 15:40:14,442 | INFO     | left removable region: 40
[2026-03-01 10:41:08] 2026-03-01 15:40:14,445 | INFO     | sum of square deviations: 330027571928.82056
[2026-03-01 10:41:08] 2026-03-01 15:40:14,603 | INFO     | sum of deviations: 440549353316.28046
[2026-03-01 10:41:08] 2026-03-01 15:40:14,604 | INFO     | mean x: 1772348075.886386
[2026-03-01 10:41:08] 2026-03-01 15:40:14,604 | INFO     | mean y: 2495252.674828599
[2026-03-01 10:41:08] 2026-03-01 15:40:14,613 | INFO     | intersect: -2363388282.8120294
[2026-03-01 10:41:08] 2026-03-01 15:40:14,616 | INFO     | chi2: 0.5115085044564314
[2026-03-01 10:41:08] 2026-03-01 15:40:14,621 | INFO     | current memory leak: 1.33 B/s (using 1021 data points, chi2=0.51)
[2026-03-01 10:41:08] 2026-03-01 15:40:14,623 | INFO     | could have reported an average CPU frequency of 3291 MHz (40 samples)
[2026-03-01 10:41:08] 2026-03-01 15:40:14,624 | INFO     | ..............................
[2026-03-01 10:41:08] 2026-03-01 15:40:14,624 | INFO     | . Timing measurements:
[2026-03-01 10:41:08] 2026-03-01 15:40:14,624 | INFO     | . get job = 1 s
[2026-03-01 10:41:08] 2026-03-01 15:40:14,628 | INFO     | . initial setup = 59 s
[2026-03-01 10:41:08] 2026-03-01 15:40:14,628 | INFO     | . payload setup = 80 s
[2026-03-01 10:41:08] 2026-03-01 15:40:14,629 | INFO     | . stage-in = 1 s
[2026-03-01 10:41:08] 2026-03-01 15:40:14,629 | INFO     | . payload execution = 65111 s
[2026-03-01 10:41:08] 2026-03-01 15:40:14,629 | INFO     | . stage-out = 12 s
[2026-03-01 10:41:08] 2026-03-01 15:40:14,629 | INFO     | . log creation = 2 s
[2026-03-01 10:41:08] 2026-03-01 15:40:14,629 | INFO     | ..............................
[2026-03-01 10:41:08] 2026-03-01 15:40:15,350 | INFO     | 
[2026-03-01 10:41:08] 2026-03-01 15:40:15,351 | INFO     | job summary report
[2026-03-01 10:41:08] 2026-03-01 15:40:15,351 | INFO     | --------------------------------------------------
[2026-03-01 10:41:08] 2026-03-01 15:40:15,351 | INFO     | PanDA job id: 7033545416
[2026-03-01 10:41:08] 2026-03-01 15:40:15,351 | INFO     | task id: 48844027
[2026-03-01 10:41:08] 2026-03-01 15:40:15,351 | INFO     | errors: (none)
[2026-03-01 10:41:08] 2026-03-01 15:40:15,352 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-01 10:41:08] 2026-03-01 15:40:15,352 | INFO     | pilot state: finished 
[2026-03-01 10:41:08] 2026-03-01 15:40:15,352 | INFO     | transexitcode: 0
[2026-03-01 10:41:08] 2026-03-01 15:40:15,352 | INFO     | exeerrorcode: 0
[2026-03-01 10:41:08] 2026-03-01 15:40:15,352 | INFO     | exeerrordiag: 
[2026-03-01 10:41:08] 2026-03-01 15:40:15,352 | INFO     | exitcode: 0
[2026-03-01 10:41:08] 2026-03-01 15:40:15,353 | INFO     | exitmsg: OK
[2026-03-01 10:41:08] 2026-03-01 15:40:15,353 | INFO     | cpuconsumptiontime: 206555 s
[2026-03-01 10:41:08] 2026-03-01 15:40:15,353 | INFO     | nevents: 400
[2026-03-01 10:41:08] 2026-03-01 15:40:15,353 | INFO     | neventsw: 0
[2026-03-01 10:41:08] 2026-03-01 15:40:15,353 | INFO     | pid: 647510
[2026-03-01 10:41:08] 2026-03-01 15:40:15,353 | INFO     | pgrp: 647510
[2026-03-01 10:41:08] 2026-03-01 15:40:15,354 | INFO     | corecount: 8
[2026-03-01 10:41:08] 2026-03-01 15:40:15,354 | INFO     | event service: False
[2026-03-01 10:41:08] 2026-03-01 15:40:15,354 | INFO     | sizes: {0: 2281330, 1: 2281931, 2: 2282043, 3: 2282043, 4: 2282043, 5: 2263450, 6: 2282716, 18: 2282716, 65197: 2336404, 65198: 2336403, 65212: 2345987, 65216: 234
[2026-03-01 10:41:08] 2026-03-01 15:40:15,354 | INFO     | --------------------------------------------------
[2026-03-01 10:41:08] 2026-03-01 15:40:15,354 | INFO     | 
[2026-03-01 10:41:08] 2026-03-01 15:40:15,375 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-03-01 10:41:08] 2026-03-01 15:40:15,716 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-01 10:41:08] 2026-03-01 15:40:15,717 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-01 10:41:08] 2026-03-01 15:40:15,717 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-01 10:41:08] 2026-03-01 15:40:15,717 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-01 10:41:08] 2026-03-01 15:40:15,717 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-01 10:41:08] 2026-03-01 15:40:15,717 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-01 10:41:08] 2026-03-01 15:40:15,718 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-01 10:41:08] 2026-03-01 15:40:15,718 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-01 10:41:08] 2026-03-01 15:40:15,718 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-01 10:41:08] 2026-03-01 15:40:15,718 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-01 10:41:08] 2026-03-01 15:40:15,718 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-01 10:41:08] 2026-03-01 15:40:15,718 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-01 10:41:08] 2026-03-01 15:40:15,719 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-01 10:41:08] 2026-03-01 15:40:15,719 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-01 10:41:08] 2026-03-01 15:40:15,719 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-01 10:41:08] 2026-03-01 15:40:15,719 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-01 10:41:08] 2026-03-01 15:40:15,720 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-01 10:41:08] 2026-03-01 15:40:15,720 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-01 10:41:08] 2026-03-01 15:40:15,720 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-01 10:41:08] 2026-03-01 15:40:15,720 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-01 10:41:08] 2026-03-01 15:40:15,721 | INFO     | job 7033545416 has completed (purged errors)
[2026-03-01 10:41:08] 2026-03-01 15:40:15,721 | INFO     | overall cleanup function is called
[2026-03-01 10:41:08] 2026-03-01 15:40:16,736 | INFO     | --- collectZombieJob: --- 10, [647510]
[2026-03-01 10:41:08] 2026-03-01 15:40:16,737 | INFO     | zombie collector waiting for pid 647510
[2026-03-01 10:41:08] 2026-03-01 15:40:16,737 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-01 10:41:08] 2026-03-01 15:40:16,737 | INFO     | collected zombie processes
[2026-03-01 10:41:08] 2026-03-01 15:40:16,737 | INFO     | will attempt to kill all subprocesses of pid=647510
[2026-03-01 10:41:08] 2026-03-01 15:40:17,144 | INFO     | PID=634189 has CPU usage=30.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-01 10:41:08] 2026-03-01 15:40:17,144 | INFO     | .. there are 25 such processes running
[2026-03-01 10:41:08] 2026-03-01 15:40:18,524 | INFO     | process IDs to be killed: [647510] (in reverse order)
[2026-03-01 10:41:08] 2026-03-01 15:40:18,854 | WARNING  | found no corresponding commands to process id(s)
[2026-03-01 10:41:08] 2026-03-01 15:40:18,856 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-01 10:41:08] 2026-03-01 15:40:18,887 | INFO     | did not find any defunct processes belonging to 647510
[2026-03-01 10:41:08] 2026-03-01 15:40:18,913 | INFO     | did not find any defunct processes belonging to 647510
[2026-03-01 10:41:08] 2026-03-01 15:40:18,913 | INFO     | ready for new job
[2026-03-01 10:41:08] 2026-03-01 15:40:18,914 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-01 10:41:08] 2026-03-01 15:40:18,925 | INFO     | **************************************
[2026-03-01 10:41:08] 2026-03-01 15:40:18,925 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-01 10:41:08] 2026-03-01 15:40:18,925 | INFO     | **************************************
[2026-03-01 10:41:08] 2026-03-01 15:40:18,925 | INFO     | 
[2026-03-01 10:41:08] 2026-03-01 15:40:18,936 | INFO     | architecture information:
[2026-03-01 10:41:08] 2026-03-01 15:40:18,937 | INFO     | executing command: cat /etc/os-release
[2026-03-01 10:41:08] 2026-03-01 15:40:18,971 | INFO     | cat /etc/os-release:
[2026-03-01 10:41:08] NAME="CentOS Linux"
[2026-03-01 10:41:08] VERSION="7 (Core)"
[2026-03-01 10:41:08] ID="centos"
[2026-03-01 10:41:08] ID_LIKE="rhel fedora"
[2026-03-01 10:41:08] VERSION_ID="7"
[2026-03-01 10:41:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-01 10:41:08] ANSI_COLOR="0;31"
[2026-03-01 10:41:08] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-01 10:41:08] HOME_URL="https://www.centos.org/"
[2026-03-01 10:41:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-01 10:41:08] 
[2026-03-01 10:41:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-01 10:41:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-01 10:41:08] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-01 10:41:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-01 10:41:08] 
[2026-03-01 10:41:08] 2026-03-01 15:40:18,972 | INFO     | **************************************
[2026-03-01 10:41:08] 2026-03-01 15:40:19,476 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-03-01 10:41:08] 2026-03-01 15:40:19,751 | INFO     | sufficient remaining disk space (84887470080 B)
[2026-03-01 10:41:08] 2026-03-01 15:40:19,752 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-01 10:41:08] 2026-03-01 15:40:19,752 | INFO     | current server update state: UPDATING_FINAL
[2026-03-01 10:41:08] 2026-03-01 15:40:19,752 | INFO     | update_server=False
[2026-03-01 10:41:08] 2026-03-01 15:40:19,752 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-01 10:41:08] 2026-03-01 15:40:19,753 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-01 10:41:08] 2026-03-01 15:40:19,865 | INFO     | aborting loop
[2026-03-01 10:41:08] 2026-03-01 15:40:19,757 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-01 10:41:08] 2026-03-01 15:40:19,919 | INFO     | all payload control threads have been joined
[2026-03-01 10:41:08] 2026-03-01 15:40:20,377 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-01 10:41:08] 2026-03-01 15:40:20,595 | INFO     | all data control threads have been joined
[2026-03-01 10:41:08] 2026-03-01 15:40:20,676 | INFO     | all job control threads have been joined
[2026-03-01 10:41:08] 2026-03-01 15:40:20,759 | INFO     | [job] retrieve thread has finished
[2026-03-01 10:41:08] 2026-03-01 15:40:20,871 | INFO     | [job] job monitor thread has finished
[2026-03-01 10:41:08] 2026-03-01 15:40:20,926 | INFO     | [payload] control thread has finished
[2026-03-01 10:41:08] 2026-03-01 15:40:21,008 | INFO     | [job] validate thread has finished
[2026-03-01 10:41:08] 2026-03-01 15:40:21,115 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-01 10:41:08] 2026-03-01 15:40:21,162 | INFO     | [payload] execute_payloads thread has finished
[2026-03-01 10:41:08] 2026-03-01 15:40:21,206 | INFO     | [data] copytool_in thread has finished
[2026-03-01 10:41:08] 2026-03-01 15:40:21,384 | INFO     | [job] queue monitor thread has finished
[2026-03-01 10:41:08] 2026-03-01 15:40:21,603 | INFO     | [data] control thread has finished
[2026-03-01 10:41:08] 2026-03-01 15:40:21,624 | INFO     | [job] create_data_payload thread has finished
[2026-03-01 10:41:08] 2026-03-01 15:40:21,693 | INFO     | [job] control thread has finished
[2026-03-01 10:41:08] 2026-03-01 15:40:21,793 | INFO     | [payload] failed_post thread has finished
[2026-03-01 10:41:08] 2026-03-01 15:40:21,873 | INFO     | [data] copytool_out thread has finished
[2026-03-01 10:41:08] 2026-03-01 15:40:21,915 | INFO     | [payload] validate_post thread has finished
[2026-03-01 10:41:08] 2026-03-01 15:40:22,107 | INFO     | [payload] validate_pre thread has finished
[2026-03-01 10:41:08] 2026-03-01 15:40:22,616 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-01 10:41:08] 2026-03-01 15:40:26,625 | INFO     | [data] queue_monitor thread has finished
[2026-03-01 10:41:08] 2026-03-01 15:40:50,330 | INFO     | PID=634189 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-01 10:41:08] 2026-03-01 15:40:50,331 | INFO     | .. there are 25 such processes running
[2026-03-01 10:41:08] 2026-03-01 15:40:50,331 | INFO     | found 0 job(s) in 20 queues
[2026-03-01 10:41:08] 2026-03-01 15:40:50,331 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-01 10:41:08] 2026-03-01 15:40:50,331 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-01 10:41:08] 2026-03-01 15:40:58,967 | INFO     | [monitor] cgroup control has ended
[2026-03-01 10:41:08] 2026-03-01 15:40:59,961 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139888993171264)>', '<ExcThread(monitor, started 139888711448320)>']
[2026-03-01 10:41:08] 2026-03-01 15:41:00,391 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-01 10:41:08] 2026-03-01 15:41:00,392 | INFO     | [monitor] control thread has ended
[2026-03-01 10:41:08] 2026-03-01 15:41:04,986 | INFO     | all workflow threads have been joined
[2026-03-01 10:41:08] 2026-03-01 15:41:04,987 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-01 10:41:08] 2026-03-01 15:41:04,987 | INFO     | traces error code: 0
[2026-03-01 10:41:08] 2026-03-01 15:41:04,988 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-01 10:41:08] 2026-03-01 15:41:06,262 [wrapper] ==== pilot stdout END ====
[2026-03-01 10:41:08] 2026-03-01 15:41:06,304 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-01 10:41:08] 2026-03-01 15:41:06,331 [wrapper] pilotpid: 634189
[2026-03-01 10:41:08] 2026-03-01 15:41:06,357 [wrapper] Pilot exit status: 0
[2026-03-01 10:41:08] 2026-03-01 15:41:06,389 [wrapper] pandaids: 7033545416
[2026-03-01 10:41:08] 2026-03-01 15:41:07,248 [wrapper] cleanup supervisor_pilot 2176838 634190
[2026-03-01 10:41:08] 2026-03-01 15:41:07,266 [wrapper] Test setup, not cleaning
[2026-03-01 10:41:08] 2026-03-01 15:41:07,314 [wrapper] apfmon messages muted
[2026-03-01 10:41:08] 2026-03-01 15:41:07,318 [wrapper] ==== wrapper stdout END ====
[2026-03-01 10:41:08] 2026-03-01 15:41:07,321 [wrapper] ==== wrapper stderr END ====
[2026-03-01 10:41:08]  *** Error codes and diagnostics ***
[2026-03-01 10:41:08]     "exeErrorCode": 0,
[2026-03-01 10:41:08]     "exeErrorDiag": "",
[2026-03-01 10:41:08]     "pilotErrorCode": 0,
[2026-03-01 10:41:08]     "pilotErrorDiag": "",
[2026-03-01 10:41:08]  *** Listing of results directory ***
[2026-03-01 10:41:08] total 413932
[2026-03-01 10:41:08] -rwx------. 1 boincer umatlas     36322 Feb 28 11:02 runpilot2-wrapper.sh
[2026-03-01 10:41:08] -rw-r--r--. 1 boincer umatlas      5111 Feb 28 11:04 queuedata.json
[2026-03-01 10:41:08] -rw-r--r--. 1 boincer umatlas    584627 Feb 28 11:04 pilot3.tar.gz
[2026-03-01 10:41:08] -rw-r--r--. 1 boincer umatlas       100 Feb 28 16:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-01 10:41:08] -rwxr-xr-x. 1 boincer umatlas      7986 Feb 28 16:29 run_atlas
[2026-03-01 10:41:08] -rw-r--r--. 1 boincer umatlas       105 Feb 28 16:29 job.xml
[2026-03-01 10:41:08] -rw-r--r--. 2 boincer umatlas 204402071 Feb 28 16:29 EVNT.48452346._000002.pool.root.1
[2026-03-01 10:41:08] -rw-r--r--. 2 boincer umatlas     15845 Feb 28 16:29 start_atlas.sh
[2026-03-01 10:41:08] drwxrwx--x. 2 boincer umatlas      4096 Feb 28 16:29 shared
[2026-03-01 10:41:08] -rw-r--r--. 2 boincer umatlas    597990 Feb 28 16:29 input.tar.gz
[2026-03-01 10:41:08] -rw-r--r--. 1 boincer umatlas         0 Feb 28 16:29 boinc_lockfile
[2026-03-01 10:41:08] -rw-r--r--. 1 boincer umatlas      2694 Feb 28 16:30 pandaJob.out
[2026-03-01 10:41:08] -rw-------. 1 boincer umatlas        57 Feb 28 16:30 setup.sh.local
[2026-03-01 10:41:08] -rw-------. 1 boincer umatlas    998790 Feb 28 16:32 agis_schedconf.cvmfs.json
[2026-03-01 10:41:08] -rw-------. 1 boincer umatlas       430 Feb 28 16:32 workernode_map.json
[2026-03-01 10:41:08] drwx------. 5 boincer umatlas      4096 Feb 28 16:33 pilot3
[2026-03-01 10:41:08] -rw-------. 1 boincer umatlas 198695510 Mar  1 10:37 HITS.48844027._000041.pool.root.1
[2026-03-01 10:41:08] -rw-r--r--. 1 boincer umatlas       531 Mar  1 10:37 boinc_task_state.xml
[2026-03-01 10:41:08] -rw-r--r--. 1 boincer umatlas      6910 Mar  1 10:39 init_data.xml
[2026-03-01 10:41:08] -rw-------. 1 boincer umatlas      1031 Mar  1 10:39 memory_monitor_summary.json
[2026-03-01 10:41:08] -rw-------. 1 boincer umatlas        95 Mar  1 10:39 pilot_heartbeat.json
[2026-03-01 10:41:08] -rw-------. 1 boincer umatlas   1513015 Mar  1 10:40 agis_ddmendpoints.agis.ALL.json
[2026-03-01 10:41:08] -rw-------. 1 boincer umatlas   1058551 Mar  1 10:40 log.48844027._000041.job.log.tgz.1
[2026-03-01 10:41:08] -rw-------. 1 boincer umatlas      6322 Mar  1 10:40 heartbeat.json
[2026-03-01 10:41:08] -rw-r--r--. 1 boincer umatlas      8192 Mar  1 10:41 boinc_mmap_file
[2026-03-01 10:41:08] -rw-r--r--. 1 boincer umatlas        29 Mar  1 10:41 wrapper_checkpoint.txt
[2026-03-01 10:41:08] -rw-------. 1 boincer umatlas      4819 Mar  1 10:41 pilotlog.txt
[2026-03-01 10:41:08] -rw-------. 1 boincer umatlas   7358060 Mar  1 10:41 log.48844027._000041.job.log.1
[2026-03-01 10:41:08] -rw-------. 1 boincer umatlas       357 Mar  1 10:41 output.list
[2026-03-01 10:41:08] -rw-r--r--. 1 boincer umatlas       620 Mar  1 10:41 runtime_log
[2026-03-01 10:41:08] -rw-------. 1 boincer umatlas   8437760 Mar  1 10:41 result.tar.gz
[2026-03-01 10:41:08] -rw-r--r--. 1 boincer umatlas      9342 Mar  1 10:41 runtime_log.err
[2026-03-01 10:41:08] -rw-------. 1 boincer umatlas       660 Mar  1 10:41 g7VLDmkwbG9n9Rq4apOajLDm4fhM0noT9bVooX4SDmzy5KDmAA1yen.diag
[2026-03-01 10:41:08] -rw-r--r--. 1 boincer umatlas     21246 Mar  1 10:41 stderr.txt
[2026-03-01 10:41:08] HITS file was successfully produced:
[2026-03-01 10:41:08] -rw-------. 1 boincer umatlas 198695510 Mar  1 10:37 shared/HITS.pool.root.1
[2026-03-01 10:41:08]  *** Contents of shared directory: ***
[2026-03-01 10:41:08] total 402500
[2026-03-01 10:41:08] -rw-r--r--. 2 boincer umatlas 204402071 Feb 28 16:29 ATLAS.root_0
[2026-03-01 10:41:08] -rw-r--r--. 2 boincer umatlas     15845 Feb 28 16:29 start_atlas.sh
[2026-03-01 10:41:08] -rw-r--r--. 2 boincer umatlas    597990 Feb 28 16:29 input.tar.gz
[2026-03-01 10:41:08] -rw-------. 1 boincer umatlas 198695510 Mar  1 10:37 HITS.pool.root.1
[2026-03-01 10:41:08] -rw-------. 1 boincer umatlas   8437760 Mar  1 10:41 result.tar.gz
10:41:09 (627594): run_atlas exited; CPU time 209744.138106
10:41:09 (627594): called boinc_finish(0)

</stderr_txt>
]]>

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