Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:34:17 (2289767): wrapper (7.7.26015): starting
05:34:17 (2289767): wrapper: running run_atlas (--nthreads 3)
[2026-03-01 05:34:17] Arguments: --nthreads 3
[2026-03-01 05:34:17] Threads: 3
[2026-03-01 05:34:17] Checking for CVMFS
[2026-03-01 05:34:17] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-01 05:34:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-01 05:34:18] Running cvmfs_config stat atlas.cern.ch
[2026-03-01 05:34:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-01 05:34:18] 2.9.2.0 1557025 5111 80312 156757 0 50 27255721 36864000 0 130560 0 2089573 99.981 201946 17413 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-01 05:34:18] CVMFS is ok
[2026-03-01 05:34:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-01 05:34:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-01 05:34:18] Further information can be found at the LHC@home message board.
[2026-03-01 05:34:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-01 05:34:18] Checking for apptainer binary...
[2026-03-01 05:34:18] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-01 05:34:18] Running /usr/bin/apptainer --version
[2026-03-01 05:34:18] apptainer version 1.4.1-1.1
[2026-03-01 05:34:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-01 05:34:18] thA327
[2026-03-01 05:34:18] apptainer works
[2026-03-01 05:34:18] Set ATHENA_PROC_NUMBER=3
[2026-03-01 05:34:18] Set ATHENA_CORE_NUMBER=3
[2026-03-01 05:34:18] Starting ATLAS job with PandaID=7033390316
[2026-03-01 05:34:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-01 07:13:42]  *** The last 200 lines of the pilot log: ***
[2026-03-01 07:13:42] 2026-03-01 06:13:02,577 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-01 07:13:42] 2026-03-01 06:13:02,578 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-01 07:13:42] 2026-03-01 06:13:02,578 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-01 07:13:42] 2026-03-01 06:13:02,578 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-01 07:13:42] 2026-03-01 06:13:02,578 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-01 07:13:42] 2026-03-01 06:13:02,578 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-01 07:13:42] 2026-03-01 06:13:02,578 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-01 07:13:42] 2026-03-01 06:13:02,578 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-01 07:13:42] 2026-03-01 06:13:02,578 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-01 07:13:42] 2026-03-01 06:13:02,578 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-01 07:13:42] 2026-03-01 06:13:02,578 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-01 07:13:42] 2026-03-01 06:13:02,578 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-01 07:13:42] 2026-03-01 06:13:02,578 | INFO     | job 7033390316 has completed (purged errors)
[2026-03-01 07:13:42] 2026-03-01 06:13:02,578 | INFO     | overall cleanup function is called
[2026-03-01 07:13:42] 2026-03-01 06:13:03,584 | INFO     | --- collectZombieJob: --- 10, [2298237]
[2026-03-01 07:13:42] 2026-03-01 06:13:03,584 | INFO     | zombie collector waiting for pid 2298237
[2026-03-01 07:13:42] 2026-03-01 06:13:03,584 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-01 07:13:42] 2026-03-01 06:13:03,585 | INFO     | collected zombie processes
[2026-03-01 07:13:42] 2026-03-01 06:13:03,585 | INFO     | will attempt to kill all subprocesses of pid=2298237
[2026-03-01 07:13:42] 2026-03-01 06:13:03,626 | INFO     | process IDs to be killed: [2298237] (in reverse order)
[2026-03-01 07:13:42] 2026-03-01 06:13:03,649 | WARNING  | found no corresponding commands to process id(s)
[2026-03-01 07:13:42] 2026-03-01 06:13:03,649 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-01 07:13:42] 2026-03-01 06:13:03,650 | INFO     | did not find any defunct processes belonging to 2298237
[2026-03-01 07:13:42] 2026-03-01 06:13:03,651 | INFO     | did not find any defunct processes belonging to 2298237
[2026-03-01 07:13:42] 2026-03-01 06:13:03,651 | INFO     | ready for new job
[2026-03-01 07:13:42] 2026-03-01 06:13:03,651 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-01 07:13:42] 2026-03-01 06:13:03,652 | INFO     | **************************************
[2026-03-01 07:13:42] 2026-03-01 06:13:03,652 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-01 07:13:42] 2026-03-01 06:13:03,652 | INFO     | **************************************
[2026-03-01 07:13:42] 2026-03-01 06:13:03,652 | INFO     | 
[2026-03-01 07:13:42] 2026-03-01 06:13:03,652 | INFO     | architecture information:
[2026-03-01 07:13:42] 2026-03-01 06:13:03,652 | INFO     | executing command: cat /etc/os-release
[2026-03-01 07:13:42] 2026-03-01 06:13:03,661 | INFO     | cat /etc/os-release:
[2026-03-01 07:13:42] NAME="CentOS Linux"
[2026-03-01 07:13:42] VERSION="7 (Core)"
[2026-03-01 07:13:42] ID="centos"
[2026-03-01 07:13:42] ID_LIKE="rhel fedora"
[2026-03-01 07:13:42] VERSION_ID="7"
[2026-03-01 07:13:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-01 07:13:42] ANSI_COLOR="0;31"
[2026-03-01 07:13:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-01 07:13:42] HOME_URL="https://www.centos.org/"
[2026-03-01 07:13:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-01 07:13:42] 
[2026-03-01 07:13:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-01 07:13:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-01 07:13:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-01 07:13:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-01 07:13:42] 
[2026-03-01 07:13:42] 2026-03-01 06:13:03,661 | INFO     | **************************************
[2026-03-01 07:13:42] 2026-03-01 06:13:04,164 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-01 07:13:42] 2026-03-01 06:13:04,176 | INFO     | sufficient remaining disk space (376885477376 B)
[2026-03-01 07:13:42] 2026-03-01 06:13:04,177 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-01 07:13:42] 2026-03-01 06:13:04,177 | INFO     | current server update state: UPDATING_FINAL
[2026-03-01 07:13:42] 2026-03-01 06:13:04,177 | INFO     | update_server=False
[2026-03-01 07:13:42] 2026-03-01 06:13:04,177 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-01 07:13:42] 2026-03-01 06:13:04,177 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-01 07:13:42] 2026-03-01 06:13:04,177 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-01 07:13:42] 2026-03-01 06:13:04,638 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-01 07:13:42] 2026-03-01 06:13:04,679 | WARNING  | process 2298237 can no longer be monitored (due to stat problems) - aborting
[2026-03-01 07:13:42] 2026-03-01 06:13:04,708 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-01 07:13:42] 2026-03-01 06:13:04,743 | INFO     | number of running child processes to parent process 2298237: 1
[2026-03-01 07:13:42] 2026-03-01 06:13:04,743 | INFO     | maximum number of monitored processes: 6
[2026-03-01 07:13:42] 2026-03-01 06:13:04,743 | INFO     | aborting job monitoring since job object (job id=7033390316) has expired
[2026-03-01 07:13:42] 2026-03-01 06:13:04,743 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-01 07:13:42] 2026-03-01 06:13:04,743 | INFO     | will abort loop
[2026-03-01 07:13:42] 2026-03-01 06:13:05,068 | INFO     | all data control threads have been joined
[2026-03-01 07:13:42] 2026-03-01 06:13:05,169 | INFO     | all payload control threads have been joined
[2026-03-01 07:13:42] 2026-03-01 06:13:05,182 | INFO     | [job] retrieve thread has finished
[2026-03-01 07:13:42] 2026-03-01 06:13:05,183 | INFO     | [job] queue monitor thread has finished
[2026-03-01 07:13:42] 2026-03-01 06:13:05,188 | INFO     | [payload] validate_pre thread has finished
[2026-03-01 07:13:42] 2026-03-01 06:13:05,265 | INFO     | all job control threads have been joined
[2026-03-01 07:13:42] 2026-03-01 06:13:05,313 | INFO     | [payload] execute_payloads thread has finished
[2026-03-01 07:13:42] 2026-03-01 06:13:05,474 | INFO     | [data] copytool_in thread has finished
[2026-03-01 07:13:42] 2026-03-01 06:13:05,540 | INFO     | [payload] validate_post thread has finished
[2026-03-01 07:13:42] 2026-03-01 06:13:05,749 | INFO     | [job] job monitor thread has finished
[2026-03-01 07:13:42] 2026-03-01 06:13:05,868 | INFO     | [payload] failed_post thread has finished
[2026-03-01 07:13:42] 2026-03-01 06:13:06,074 | INFO     | [data] control thread has finished
[2026-03-01 07:13:42] 2026-03-01 06:13:06,175 | INFO     | [payload] control thread has finished
[2026-03-01 07:13:42] 2026-03-01 06:13:06,270 | INFO     | [job] control thread has finished
[2026-03-01 07:13:42] 2026-03-01 06:13:06,450 | INFO     | job.realtimelogging is not enabled
[2026-03-01 07:13:42] 2026-03-01 06:13:06,527 | INFO     | [job] validate thread has finished
[2026-03-01 07:13:42] 2026-03-01 06:13:06,566 | INFO     | [job] create_data_payload thread has finished
[2026-03-01 07:13:42] 2026-03-01 06:13:06,644 | INFO     | [data] copytool_out thread has finished
[2026-03-01 07:13:42] 2026-03-01 06:13:07,456 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-01 07:13:42] 2026-03-01 06:13:08,184 | INFO     | [data] queue_monitor thread has finished
[2026-03-01 07:13:42] 2026-03-01 06:13:35,056 | INFO     | PID=2293812 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-01 07:13:42] 2026-03-01 06:13:35,056 | INFO     | found 0 job(s) in 20 queues
[2026-03-01 07:13:42] 2026-03-01 06:13:35,056 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-01 07:13:42] 2026-03-01 06:13:35,056 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-01 07:13:42] 2026-03-01 06:13:36,049 | INFO     | [monitor] cgroup control has ended
[2026-03-01 07:13:42] 2026-03-01 06:13:36,928 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139666780268352)>', '<ExcThread(monitor, started 139666507712256)>']
[2026-03-01 07:13:42] 2026-03-01 06:13:37,067 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-01 07:13:42] 2026-03-01 06:13:37,067 | INFO     | [monitor] control thread has ended
[2026-03-01 07:13:42] 2026-03-01 06:13:41,945 | INFO     | all workflow threads have been joined
[2026-03-01 07:13:42] 2026-03-01 06:13:41,946 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-01 07:13:42] 2026-03-01 06:13:41,946 | INFO     | traces error code: 0
[2026-03-01 07:13:42] 2026-03-01 06:13:41,946 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-01 07:13:42] 2026-03-01 06:13:41,994 [wrapper] ==== pilot stdout END ====
[2026-03-01 07:13:42] 2026-03-01 06:13:41,997 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-01 07:13:42] 2026-03-01 06:13:41,999 [wrapper] pilotpid: 2293812
[2026-03-01 07:13:42] 2026-03-01 06:13:42,002 [wrapper] Pilot exit status: 0
[2026-03-01 07:13:42] 2026-03-01 06:13:42,009 [wrapper] pandaids: 7033390316
[2026-03-01 07:13:42] 2026-03-01 06:13:42,024 [wrapper] cleanup supervisor_pilot 2303729 2293813
[2026-03-01 07:13:42] 2026-03-01 06:13:42,027 [wrapper] Test setup, not cleaning
[2026-03-01 07:13:42] 2026-03-01 06:13:42,029 [wrapper] apfmon messages muted
[2026-03-01 07:13:42] 2026-03-01 06:13:42,031 [wrapper] ==== wrapper stdout END ====
[2026-03-01 07:13:42] 2026-03-01 06:13:42,033 [wrapper] ==== wrapper stderr END ====
[2026-03-01 07:13:42]  *** Error codes and diagnostics ***
[2026-03-01 07:13:42]     "exeErrorCode": 0,
[2026-03-01 07:13:42]     "exeErrorDiag": "",
[2026-03-01 07:13:42]     "pilotErrorCode": 0,
[2026-03-01 07:13:42]     "pilotErrorDiag": "",
[2026-03-01 07:13:42]  *** Listing of results directory ***
[2026-03-01 07:13:42] total 514084
[2026-03-01 07:13:42] -rw-r--r-- 1 boinc boinc    584627 Feb 28 14:52 pilot3.tar.gz
[2026-03-01 07:13:42] -rwx------ 1 boinc boinc     36322 Feb 28 14:52 runpilot2-wrapper.sh
[2026-03-01 07:13:42] -rw-r--r-- 1 boinc boinc      5111 Feb 28 14:53 queuedata.json
[2026-03-01 07:13:42] -rw-r--r-- 1 boinc boinc       100 Mar  1 05:34 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-01 07:13:42] -rwxr-xr-x 1 boinc boinc      7986 Mar  1 05:34 run_atlas
[2026-03-01 07:13:42] -rw-r--r-- 1 boinc boinc       105 Mar  1 05:34 job.xml
[2026-03-01 07:13:42] -rw-r--r-- 2 boinc boinc 290629337 Mar  1 05:34 EVNT.48220085._000354.pool.root.1
[2026-03-01 07:13:42] -rw-r--r-- 2 boinc boinc    597965 Mar  1 05:34 input.tar.gz
[2026-03-01 07:13:42] -rw-r--r-- 2 boinc boinc     15845 Mar  1 05:34 start_atlas.sh
[2026-03-01 07:13:42] drwxrwx--x 2 boinc boinc      4096 Mar  1 05:34 shared
[2026-03-01 07:13:42] -rw-r--r-- 1 boinc boinc         0 Mar  1 05:34 boinc_setup_complete
[2026-03-01 07:13:42] -rw-r--r-- 1 boinc boinc      6446 Mar  1 05:34 init_data.xml
[2026-03-01 07:13:42] -rw-r--r-- 1 boinc boinc         0 Mar  1 05:34 boinc_lockfile
[2026-03-01 07:13:42] -rw-r--r-- 1 boinc boinc      2567 Mar  1 05:34 pandaJob.out
[2026-03-01 07:13:42] -rw------- 1 boinc boinc    998782 Mar  1 05:34 agis_schedconf.cvmfs.json
[2026-03-01 07:13:42] -rw------- 1 boinc boinc   1513015 Mar  1 05:34 agis_ddmendpoints.agis.ALL.json
[2026-03-01 07:13:42] -rw------- 1 boinc boinc       422 Mar  1 05:34 workernode_map.json
[2026-03-01 07:13:42] drwx------ 5 boinc boinc      4096 Mar  1 05:34 pilot3
[2026-03-01 07:13:42] -rw------- 1 boinc boinc 229612805 Mar  1 07:12 HITS.48838416._008927.pool.root.1
[2026-03-01 07:13:42] -rw-r--r-- 1 boinc boinc       529 Mar  1 07:12 boinc_task_state.xml
[2026-03-01 07:13:42] -rw------- 1 boinc boinc        95 Mar  1 07:12 pilot_heartbeat.json
[2026-03-01 07:13:42] -rw------- 1 boinc boinc      1014 Mar  1 07:12 memory_monitor_summary.json
[2026-03-01 07:13:42] -rw------- 1 boinc boinc    274095 Mar  1 07:13 log.48838416._008927.job.log.tgz.1
[2026-03-01 07:13:42] -rw------- 1 boinc boinc      6293 Mar  1 07:13 heartbeat.json
[2026-03-01 07:13:42] -rw-r--r-- 1 boinc boinc      8192 Mar  1 07:13 boinc_mmap_file
[2026-03-01 07:13:42] -rw-r--r-- 1 boinc boinc        27 Mar  1 07:13 wrapper_checkpoint.txt
[2026-03-01 07:13:42] -rw------- 1 boinc boinc      5344 Mar  1 07:13 pilotlog.txt
[2026-03-01 07:13:42] -rw------- 1 boinc boinc    858718 Mar  1 07:13 log.48838416._008927.job.log.1
[2026-03-01 07:13:42] -rw------- 1 boinc boinc       357 Mar  1 07:13 output.list
[2026-03-01 07:13:42] -rw-r--r-- 1 boinc boinc       620 Mar  1 07:13 runtime_log
[2026-03-01 07:13:42] -rw------- 1 boinc boinc   1146880 Mar  1 07:13 result.tar.gz
[2026-03-01 07:13:42] -rw-r--r-- 1 boinc boinc      8896 Mar  1 07:13 runtime_log.err
[2026-03-01 07:13:42] -rw------- 1 boinc boinc       657 Mar  1 07:13 6q8KDmUvZG9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmKM7KDm4x7mEn.diag
[2026-03-01 07:13:42] -rw-r--r-- 1 boinc boinc     12760 Mar  1 07:13 stderr.txt
[2026-03-01 07:13:42] HITS file was successfully produced:
[2026-03-01 07:13:42] -rw------- 1 boinc boinc 229612805 Mar  1 07:12 shared/HITS.pool.root.1
[2026-03-01 07:13:42]  *** Contents of shared directory: ***
[2026-03-01 07:13:42] total 509780
[2026-03-01 07:13:42] -rw-r--r-- 2 boinc boinc 290629337 Mar  1 05:34 ATLAS.root_0
[2026-03-01 07:13:42] -rw-r--r-- 2 boinc boinc    597965 Mar  1 05:34 input.tar.gz
[2026-03-01 07:13:42] -rw-r--r-- 2 boinc boinc     15845 Mar  1 05:34 start_atlas.sh
[2026-03-01 07:13:42] -rw------- 1 boinc boinc 229612805 Mar  1 07:12 HITS.pool.root.1
[2026-03-01 07:13:42] -rw------- 1 boinc boinc   1146880 Mar  1 07:13 result.tar.gz
07:13:43 (2289767): run_atlas exited; CPU time 16955.451992
07:13:43 (2289767): called boinc_finish(0)

</stderr_txt>
]]>

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