Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:10:14 (3074993): wrapper (7.7.26015): starting
10:10:14 (3074993): wrapper: running run_atlas (--nthreads 3)
[2026-03-01 10:10:14] Arguments: --nthreads 3
[2026-03-01 10:10:14] Threads: 3
[2026-03-01 10:10:14] Checking for CVMFS
[2026-03-01 10:10:14] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-01 10:10:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-01 10:10:15] Running cvmfs_config stat atlas.cern.ch
[2026-03-01 10:10:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-01 10:10:15] 2.9.2.0 2730021 2890 80408 156763 0 50 29701836 36864000 0 130560 0 967664 99.981 106262 10222 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-01 10:10:15] CVMFS is ok
[2026-03-01 10:10:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-01 10:10:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-01 10:10:15] Further information can be found at the LHC@home message board.
[2026-03-01 10:10:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-01 10:10:15] Checking for apptainer binary...
[2026-03-01 10:10:15] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-01 10:10:15] Running /usr/bin/apptainer --version
[2026-03-01 10:10:15] apptainer version 1.4.1-1.1
[2026-03-01 10:10:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-01 10:10:15] thA349
[2026-03-01 10:10:15] apptainer works
[2026-03-01 10:10:15] Set ATHENA_PROC_NUMBER=3
[2026-03-01 10:10:15] Set ATHENA_CORE_NUMBER=3
[2026-03-01 10:10:15] Starting ATLAS job with PandaID=7033387403
[2026-03-01 10:10:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-01 11:15:35]  *** The last 200 lines of the pilot log: ***
[2026-03-01 11:15:35] 2026-03-01 10:14:57,233 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-01 11:15:35] 2026-03-01 10:14:57,233 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-01 11:15:35] 2026-03-01 10:14:57,233 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-01 11:15:35] 2026-03-01 10:14:57,233 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-01 11:15:35] 2026-03-01 10:14:57,233 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-01 11:15:35] 2026-03-01 10:14:57,233 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-01 11:15:35] 2026-03-01 10:14:57,233 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-01 11:15:35] 2026-03-01 10:14:57,233 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-01 11:15:35] 2026-03-01 10:14:57,233 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-01 11:15:35] 2026-03-01 10:14:57,233 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-01 11:15:35] 2026-03-01 10:14:57,233 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-01 11:15:35] 2026-03-01 10:14:57,233 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-01 11:15:35] 2026-03-01 10:14:57,233 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-01 11:15:35] 2026-03-01 10:14:57,233 | INFO     | job 7033387403 has completed (purged errors)
[2026-03-01 11:15:35] 2026-03-01 10:14:57,233 | INFO     | overall cleanup function is called
[2026-03-01 11:15:35] 2026-03-01 10:14:58,240 | INFO     | --- collectZombieJob: --- 10, [3083460]
[2026-03-01 11:15:35] 2026-03-01 10:14:58,240 | INFO     | zombie collector waiting for pid 3083460
[2026-03-01 11:15:35] 2026-03-01 10:14:58,240 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-01 11:15:35] 2026-03-01 10:14:58,240 | INFO     | collected zombie processes
[2026-03-01 11:15:35] 2026-03-01 10:14:58,240 | INFO     | will attempt to kill all subprocesses of pid=3083460
[2026-03-01 11:15:35] 2026-03-01 10:14:58,280 | INFO     | process IDs to be killed: [3083460] (in reverse order)
[2026-03-01 11:15:35] 2026-03-01 10:14:58,304 | WARNING  | found no corresponding commands to process id(s)
[2026-03-01 11:15:35] 2026-03-01 10:14:58,304 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-01 11:15:35] 2026-03-01 10:14:58,305 | INFO     | did not find any defunct processes belonging to 3083460
[2026-03-01 11:15:35] 2026-03-01 10:14:58,306 | INFO     | did not find any defunct processes belonging to 3083460
[2026-03-01 11:15:35] 2026-03-01 10:14:58,306 | INFO     | ready for new job
[2026-03-01 11:15:35] 2026-03-01 10:14:58,306 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-01 11:15:35] 2026-03-01 10:14:58,307 | INFO     | **************************************
[2026-03-01 11:15:35] 2026-03-01 10:14:58,307 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-01 11:15:35] 2026-03-01 10:14:58,307 | INFO     | **************************************
[2026-03-01 11:15:35] 2026-03-01 10:14:58,307 | INFO     | 
[2026-03-01 11:15:35] 2026-03-01 10:14:58,307 | INFO     | architecture information:
[2026-03-01 11:15:35] 2026-03-01 10:14:58,307 | INFO     | executing command: cat /etc/os-release
[2026-03-01 11:15:35] 2026-03-01 10:14:58,316 | INFO     | cat /etc/os-release:
[2026-03-01 11:15:35] NAME="CentOS Linux"
[2026-03-01 11:15:35] VERSION="7 (Core)"
[2026-03-01 11:15:35] ID="centos"
[2026-03-01 11:15:35] ID_LIKE="rhel fedora"
[2026-03-01 11:15:35] VERSION_ID="7"
[2026-03-01 11:15:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-01 11:15:35] ANSI_COLOR="0;31"
[2026-03-01 11:15:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-01 11:15:35] HOME_URL="https://www.centos.org/"
[2026-03-01 11:15:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-01 11:15:35] 
[2026-03-01 11:15:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-01 11:15:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-01 11:15:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-01 11:15:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-01 11:15:35] 
[2026-03-01 11:15:35] 2026-03-01 10:14:58,316 | INFO     | **************************************
[2026-03-01 11:15:35] 2026-03-01 10:14:58,819 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-01 11:15:35] 2026-03-01 10:14:58,831 | INFO     | sufficient remaining disk space (274474205184 B)
[2026-03-01 11:15:35] 2026-03-01 10:14:58,832 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-01 11:15:35] 2026-03-01 10:14:58,832 | INFO     | current server update state: UPDATING_FINAL
[2026-03-01 11:15:35] 2026-03-01 10:14:58,832 | INFO     | update_server=False
[2026-03-01 11:15:35] 2026-03-01 10:14:58,832 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-01 11:15:35] 2026-03-01 10:14:58,832 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-01 11:15:35] 2026-03-01 10:14:58,845 | INFO     | all job control threads have been joined
[2026-03-01 11:15:35] 2026-03-01 10:14:58,923 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-01 11:15:35] 2026-03-01 10:14:58,966 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-01 11:15:35] 2026-03-01 10:14:58,966 | INFO     | aborting loop
[2026-03-01 11:15:35] 2026-03-01 10:14:59,757 | INFO     | all data control threads have been joined
[2026-03-01 11:15:35] 2026-03-01 10:14:59,837 | INFO     | [job] retrieve thread has finished
[2026-03-01 11:15:35] 2026-03-01 10:14:59,838 | INFO     | [job] queue monitor thread has finished
[2026-03-01 11:15:35] 2026-03-01 10:14:59,851 | INFO     | [job] control thread has finished
[2026-03-01 11:15:35] 2026-03-01 10:14:59,851 | INFO     | [payload] validate_post thread has finished
[2026-03-01 11:15:35] 2026-03-01 10:14:59,972 | INFO     | [job] job monitor thread has finished
[2026-03-01 11:15:35] 2026-03-01 10:14:59,991 | INFO     | [data] copytool_in thread has finished
[2026-03-01 11:15:35] 2026-03-01 10:15:00,101 | INFO     | all payload control threads have been joined
[2026-03-01 11:15:35] 2026-03-01 10:15:00,157 | INFO     | [payload] failed_post thread has finished
[2026-03-01 11:15:35] 2026-03-01 10:15:00,762 | INFO     | [data] control thread has finished
[2026-03-01 11:15:35] 2026-03-01 10:15:00,929 | INFO     | [data] copytool_out thread has finished
[2026-03-01 11:15:35] 2026-03-01 10:15:01,107 | INFO     | [payload] control thread has finished
[2026-03-01 11:15:35] 2026-03-01 10:15:01,128 | INFO     | [payload] execute_payloads thread has finished
[2026-03-01 11:15:35] 2026-03-01 10:15:01,182 | INFO     | [job] validate thread has finished
[2026-03-01 11:15:35] 2026-03-01 10:15:01,322 | INFO     | [payload] validate_pre thread has finished
[2026-03-01 11:15:35] 2026-03-01 10:15:01,322 | INFO     | [job] create_data_payload thread has finished
[2026-03-01 11:15:35] 2026-03-01 10:15:01,951 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-01 11:15:35] 2026-03-01 10:15:05,958 | INFO     | [data] queue_monitor thread has finished
[2026-03-01 11:15:35] 2026-03-01 10:15:09,153 | INFO     | job.realtimelogging is not enabled
[2026-03-01 11:15:35] 2026-03-01 10:15:10,159 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-01 11:15:35] 2026-03-01 10:15:29,050 | INFO     | PID=3079043 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-01 11:15:35] 2026-03-01 10:15:29,050 | INFO     | found 0 job(s) in 20 queues
[2026-03-01 11:15:35] 2026-03-01 10:15:29,050 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-01 11:15:35] 2026-03-01 10:15:29,050 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-01 11:15:35] 2026-03-01 10:15:29,280 | INFO     | [monitor] cgroup control has ended
[2026-03-01 11:15:35] 2026-03-01 10:15:30,341 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140059569121088)>', '<ExcThread(monitor, started 140058900272896)>']
[2026-03-01 11:15:35] 2026-03-01 10:15:31,061 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-01 11:15:35] 2026-03-01 10:15:31,061 | INFO     | [monitor] control thread has ended
[2026-03-01 11:15:35] 2026-03-01 10:15:35,367 | INFO     | all workflow threads have been joined
[2026-03-01 11:15:35] 2026-03-01 10:15:35,367 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-01 11:15:35] 2026-03-01 10:15:35,367 | INFO     | traces error code: 0
[2026-03-01 11:15:35] 2026-03-01 10:15:35,367 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-01 11:15:35] 2026-03-01 10:15:35,417 [wrapper] ==== pilot stdout END ====
[2026-03-01 11:15:35] 2026-03-01 10:15:35,419 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-01 11:15:35] 2026-03-01 10:15:35,421 [wrapper] pilotpid: 3079043
[2026-03-01 11:15:35] 2026-03-01 10:15:35,423 [wrapper] Pilot exit status: 0
[2026-03-01 11:15:35] 2026-03-01 10:15:35,431 [wrapper] pandaids: 7033387403
[2026-03-01 11:15:35] 2026-03-01 10:15:35,446 [wrapper] cleanup supervisor_pilot 3088553 3079044
[2026-03-01 11:15:35] 2026-03-01 10:15:35,448 [wrapper] Test setup, not cleaning
[2026-03-01 11:15:35] 2026-03-01 10:15:35,451 [wrapper] apfmon messages muted
[2026-03-01 11:15:35] 2026-03-01 10:15:35,453 [wrapper] ==== wrapper stdout END ====
[2026-03-01 11:15:35] 2026-03-01 10:15:35,455 [wrapper] ==== wrapper stderr END ====
[2026-03-01 11:15:35]  *** Error codes and diagnostics ***
[2026-03-01 11:15:35]     "exeErrorCode": 0,
[2026-03-01 11:15:35]     "exeErrorDiag": "",
[2026-03-01 11:15:35]     "pilotErrorCode": 0,
[2026-03-01 11:15:35]     "pilotErrorDiag": "",
[2026-03-01 11:15:35]  *** Listing of results directory ***
[2026-03-01 11:15:35] total 340792
[2026-03-01 11:15:35] -rw-r--r-- 1 boinc boinc    584627 Feb 28 14:52 pilot3.tar.gz
[2026-03-01 11:15:35] -rwx------ 1 boinc boinc     36322 Feb 28 14:52 runpilot2-wrapper.sh
[2026-03-01 11:15:35] -rw-r--r-- 1 boinc boinc      5111 Feb 28 14:53 queuedata.json
[2026-03-01 11:15:35] -rw-r--r-- 1 boinc boinc       100 Mar  1 10:10 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-01 11:15:35] -rwxr-xr-x 1 boinc boinc      7986 Mar  1 10:10 run_atlas
[2026-03-01 11:15:35] -rw-r--r-- 1 boinc boinc       105 Mar  1 10:10 job.xml
[2026-03-01 11:15:35] -rw-r--r-- 2 boinc boinc 192350702 Mar  1 10:10 EVNT.48700936._000044.pool.root.1
[2026-03-01 11:15:35] -rw-r--r-- 2 boinc boinc    597933 Mar  1 10:10 input.tar.gz
[2026-03-01 11:15:35] -rw-r--r-- 2 boinc boinc     15845 Mar  1 10:10 start_atlas.sh
[2026-03-01 11:15:35] drwxrwx--x 2 boinc boinc      4096 Mar  1 10:10 shared
[2026-03-01 11:15:35] -rw-r--r-- 1 boinc boinc         0 Mar  1 10:10 boinc_setup_complete
[2026-03-01 11:15:35] -rw-r--r-- 1 boinc boinc      6445 Mar  1 10:10 init_data.xml
[2026-03-01 11:15:35] -rw-r--r-- 1 boinc boinc         0 Mar  1 10:10 boinc_lockfile
[2026-03-01 11:15:35] -rw-r--r-- 1 boinc boinc      2498 Mar  1 10:10 pandaJob.out
[2026-03-01 11:15:35] -rw------- 1 boinc boinc    998782 Mar  1 10:10 agis_schedconf.cvmfs.json
[2026-03-01 11:15:35] -rw------- 1 boinc boinc   1513015 Mar  1 10:10 agis_ddmendpoints.agis.ALL.json
[2026-03-01 11:15:35] -rw------- 1 boinc boinc       414 Mar  1 10:10 workernode_map.json
[2026-03-01 11:15:35] drwx------ 5 boinc boinc      4096 Mar  1 10:10 pilot3
[2026-03-01 11:15:35] -rw------- 1 boinc boinc 151065896 Mar  1 11:14 HITS.48700938._000765.pool.root.1
[2026-03-01 11:15:35] -rw------- 1 boinc boinc        95 Mar  1 11:14 pilot_heartbeat.json
[2026-03-01 11:15:35] -rw-r--r-- 1 boinc boinc       529 Mar  1 11:14 boinc_task_state.xml
[2026-03-01 11:15:35] -rw------- 1 boinc boinc      1016 Mar  1 11:14 memory_monitor_summary.json
[2026-03-01 11:15:35] -rw------- 1 boinc boinc    239616 Mar  1 11:14 log.48700938._000765.job.log.tgz.1
[2026-03-01 11:15:35] -rw------- 1 boinc boinc      6275 Mar  1 11:14 heartbeat.json
[2026-03-01 11:15:35] -rw-r--r-- 1 boinc boinc      8192 Mar  1 11:15 boinc_mmap_file
[2026-03-01 11:15:35] -rw-r--r-- 1 boinc boinc        27 Mar  1 11:15 wrapper_checkpoint.txt
[2026-03-01 11:15:35] -rw------- 1 boinc boinc      4820 Mar  1 11:15 pilotlog.txt
[2026-03-01 11:15:35] -rw------- 1 boinc boinc    580373 Mar  1 11:15 log.48700938._000765.job.log.1
[2026-03-01 11:15:35] -rw------- 1 boinc boinc       357 Mar  1 11:15 output.list
[2026-03-01 11:15:35] -rw-r--r-- 1 boinc boinc       620 Mar  1 11:15 runtime_log
[2026-03-01 11:15:35] -rw------- 1 boinc boinc    839680 Mar  1 11:15 result.tar.gz
[2026-03-01 11:15:35] -rw-r--r-- 1 boinc boinc      8896 Mar  1 11:15 runtime_log.err
[2026-03-01 11:15:35] -rw------- 1 boinc boinc       657 Mar  1 11:15 diPLDmEvZG9n9Rq4apOajLDm4fhM0noT9bVooX4SDmAd5KDmm9Jq5n.diag
[2026-03-01 11:15:35] -rw-r--r-- 1 boinc boinc     12231 Mar  1 11:15 stderr.txt
[2026-03-01 11:15:35] HITS file was successfully produced:
[2026-03-01 11:15:35] -rw------- 1 boinc boinc 151065896 Mar  1 11:14 shared/HITS.pool.root.1
[2026-03-01 11:15:35]  *** Contents of shared directory: ***
[2026-03-01 11:15:35] total 336796
[2026-03-01 11:15:35] -rw-r--r-- 2 boinc boinc 192350702 Mar  1 10:10 ATLAS.root_0
[2026-03-01 11:15:35] -rw-r--r-- 2 boinc boinc    597933 Mar  1 10:10 input.tar.gz
[2026-03-01 11:15:35] -rw-r--r-- 2 boinc boinc     15845 Mar  1 10:10 start_atlas.sh
[2026-03-01 11:15:35] -rw------- 1 boinc boinc 151065896 Mar  1 11:14 HITS.pool.root.1
[2026-03-01 11:15:35] -rw------- 1 boinc boinc    839680 Mar  1 11:15 result.tar.gz
11:15:36 (3074993): run_atlas exited; CPU time 10975.596002
11:15:36 (3074993): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN