Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:42:53 (2727452): wrapper (7.7.26015): starting
07:42:53 (2727452): wrapper: running run_atlas (--nthreads 4)
[2026-03-03 07:42:53] Arguments: --nthreads 4
[2026-03-03 07:42:53] Threads: 4
[2026-03-03 07:42:53] Checking for CVMFS
[2026-03-03 07:42:53] No cvmfs_config command found, will try listing directly
[2026-03-03 07:42:53] CVMFS is ok
[2026-03-03 07:42:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-03 07:42:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-03 07:42:53] Further information can be found at the LHC@home message board.
[2026-03-03 07:42:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-03 07:42:53] Checking for apptainer binary...
[2026-03-03 07:42:53] which: no apptainer in ((null))
[2026-03-03 07:42:53] apptainer is not installed, using version from CVMFS
[2026-03-03 07:42:53] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-03 07:42:53] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot68/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2026-03-03 07:42:53] apptainer works
[2026-03-03 07:42:53] Set ATHENA_PROC_NUMBER=4
[2026-03-03 07:42:53] Set ATHENA_CORE_NUMBER=4
[2026-03-03 07:42:53] Starting ATLAS job with PandaID=7032912328
[2026-03-03 07:42:53] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot68/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-03 10:50:10]  *** The last 200 lines of the pilot log: ***
[2026-03-03 10:50:10] 2026-03-03 09:39:37,833 | INFO     | job 7032912328 has finished - writing final server update
[2026-03-03 10:50:10] 2026-03-03 09:39:37,833 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1920917/.job.ad'
[2026-03-03 10:50:10] 2026-03-03 09:39:37,833 | INFO     | total number of processed events: 400 (read)
[2026-03-03 10:50:10] 2026-03-03 09:39:37,856 | INFO     | using path: /scratch/boinc/var/slot68/slots/0/PanDA_Pilot-7032912328/memory_monitor_summary.json (trf name=prmon)
[2026-03-03 10:50:10] 2026-03-03 09:39:37,856 | INFO     | extracted standard info from prmon json
[2026-03-03 10:50:10] 2026-03-03 09:39:37,856 | INFO     | extracted standard memory fields from prmon json
[2026-03-03 10:50:10] 2026-03-03 09:39:37,856 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-03 10:50:10] 2026-03-03 09:39:37,857 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-03 10:50:10] 2026-03-03 09:39:37,857 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-03 10:50:10] 2026-03-03 09:39:37,860 | INFO     | fitting pss+swap vs Time
[2026-03-03 10:50:10] 2026-03-03 09:39:37,861 | INFO     | sum of square deviations: 1605470102.0
[2026-03-03 10:50:10] 2026-03-03 09:39:37,862 | INFO     | sum of deviations: 20397331401.999996
[2026-03-03 10:50:10] 2026-03-03 09:39:37,862 | INFO     | mean x: 1772525473.0
[2026-03-03 10:50:10] 2026-03-03 09:39:37,862 | INFO     | mean y: 2330301.554913295
[2026-03-03 10:50:10] 2026-03-03 09:39:37,862 | INFO     | intersect: -22517422290.678535
[2026-03-03 10:50:10] 2026-03-03 09:39:37,862 | INFO     | chi2: 1.3567551696510933
[2026-03-03 10:50:10] 2026-03-03 09:39:37,863 | INFO     | sum of square deviations: 1470248962.0
[2026-03-03 10:50:10] 2026-03-03 09:39:37,864 | INFO     | sum of deviations: 19685323572.5
[2026-03-03 10:50:10] 2026-03-03 09:39:37,864 | INFO     | mean x: 1772525320.5
[2026-03-03 10:50:10] 2026-03-03 09:39:37,864 | INFO     | mean y: 2329498.375
[2026-03-03 10:50:10] 2026-03-03 09:39:37,864 | INFO     | intersect: -23730205178.627388
[2026-03-03 10:50:10] 2026-03-03 09:39:37,864 | INFO     | chi2: 1.357855739929367
[2026-03-03 10:50:10] 2026-03-03 09:39:37,864 | INFO     | current chi2=1.357855739929367 (change=-0.08111782456348549 %)
[2026-03-03 10:50:10] 2026-03-03 09:39:37,864 | INFO     | right removable region: 167
[2026-03-03 10:50:10] 2026-03-03 09:39:37,865 | INFO     | sum of square deviations: 1470248962.0
[2026-03-03 10:50:10] 2026-03-03 09:39:37,865 | INFO     | sum of deviations: -1978350658.0000002
[2026-03-03 10:50:10] 2026-03-03 09:39:37,866 | INFO     | mean x: 1772525625.5
[2026-03-03 10:50:10] 2026-03-03 09:39:37,866 | INFO     | mean y: 2355163.726190476
[2026-03-03 10:50:10] 2026-03-03 09:39:37,866 | INFO     | intersect: 2387445939.617374
[2026-03-03 10:50:10] 2026-03-03 09:39:37,866 | INFO     | chi2: 0.00714777145939219
[2026-03-03 10:50:10] 2026-03-03 09:39:37,866 | INFO     | current chi2=0.00714777145939219 (change=99.4731716068397 %)
[2026-03-03 10:50:10] 2026-03-03 09:39:37,866 | INFO     | sum of square deviations: 1342841922.0
[2026-03-03 10:50:10] 2026-03-03 09:39:37,867 | INFO     | sum of deviations: -1802957541.0
[2026-03-03 10:50:10] 2026-03-03 09:39:37,867 | INFO     | mean x: 1772525778.0
[2026-03-03 10:50:10] 2026-03-03 09:39:37,867 | INFO     | mean y: 2354947.6503067487
[2026-03-03 10:50:10] 2026-03-03 09:39:37,868 | INFO     | intersect: 2382224585.099704
[2026-03-03 10:50:10] 2026-03-03 09:39:37,868 | INFO     | chi2: 0.007009613910635327
[2026-03-03 10:50:10] 2026-03-03 09:39:37,868 | INFO     | current chi2=0.007009613910635327 (change=1.9328758556672005 %)
[2026-03-03 10:50:10] 2026-03-03 09:39:37,868 | INFO     | left removable region: 20
[2026-03-03 10:50:10] 2026-03-03 09:39:37,868 | INFO     | sum of square deviations: 984941258.0
[2026-03-03 10:50:10] 2026-03-03 09:39:37,869 | INFO     | sum of deviations: 438658136.99999994
[2026-03-03 10:50:10] 2026-03-03 09:39:37,869 | INFO     | mean x: 1772525900.0
[2026-03-03 10:50:10] 2026-03-03 09:39:37,869 | INFO     | mean y: 2351547.088435374
[2026-03-03 10:50:10] 2026-03-03 09:39:37,869 | INFO     | intersect: -787069042.9852197
[2026-03-03 10:50:10] 2026-03-03 09:39:37,870 | INFO     | chi2: 0.0025983602258138924
[2026-03-03 10:50:10] 2026-03-03 09:39:37,870 | INFO     | current memory leak: 0.45 B/s (using 147 data points, chi2=0.00)
[2026-03-03 10:50:10] 2026-03-03 09:39:37,870 | INFO     | could have reported an average CPU frequency of 2712 MHz (9 samples)
[2026-03-03 10:50:10] 2026-03-03 09:39:37,870 | INFO     | ..............................
[2026-03-03 10:50:10] 2026-03-03 09:39:37,870 | INFO     | . Timing measurements:
[2026-03-03 10:50:10] 2026-03-03 09:39:37,870 | INFO     | . get job = 0 s
[2026-03-03 10:50:10] 2026-03-03 09:39:37,870 | INFO     | . initial setup = 9 s
[2026-03-03 10:50:10] 2026-03-03 09:39:37,870 | INFO     | . payload setup = 9 s
[2026-03-03 10:50:10] 2026-03-03 09:39:37,871 | INFO     | . stage-in = 0 s
[2026-03-03 10:50:10] 2026-03-03 09:39:37,871 | INFO     | . payload execution = 10552 s
[2026-03-03 10:50:10] 2026-03-03 09:39:37,871 | INFO     | . stage-out = 0 s
[2026-03-03 10:50:10] 2026-03-03 09:39:37,871 | INFO     | . log creation = 0 s
[2026-03-03 10:50:10] 2026-03-03 09:39:37,871 | INFO     | ..............................
[2026-03-03 10:50:10] 2026-03-03 09:39:37,960 | INFO     | 
[2026-03-03 10:50:10] 2026-03-03 09:39:37,960 | INFO     | job summary report
[2026-03-03 10:50:10] 2026-03-03 09:39:37,960 | INFO     | --------------------------------------------------
[2026-03-03 10:50:10] 2026-03-03 09:39:37,960 | INFO     | PanDA job id: 7032912328
[2026-03-03 10:50:10] 2026-03-03 09:39:37,960 | INFO     | task id: 48838476
[2026-03-03 10:50:10] 2026-03-03 09:39:37,960 | INFO     | errors: (none)
[2026-03-03 10:50:10] 2026-03-03 09:39:37,960 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-03 10:50:10] 2026-03-03 09:39:37,960 | INFO     | pilot state: finished 
[2026-03-03 10:50:10] 2026-03-03 09:39:37,961 | INFO     | transexitcode: 0
[2026-03-03 10:50:10] 2026-03-03 09:39:37,961 | INFO     | exeerrorcode: 0
[2026-03-03 10:50:10] 2026-03-03 09:39:37,961 | INFO     | exeerrordiag: 
[2026-03-03 10:50:10] 2026-03-03 09:39:37,961 | INFO     | exitcode: 0
[2026-03-03 10:50:10] 2026-03-03 09:39:37,961 | INFO     | exitmsg: OK
[2026-03-03 10:50:10] 2026-03-03 09:39:37,961 | INFO     | cpuconsumptiontime: 39745 s
[2026-03-03 10:50:10] 2026-03-03 09:39:37,961 | INFO     | nevents: 400
[2026-03-03 10:50:10] 2026-03-03 09:39:37,961 | INFO     | neventsw: 0
[2026-03-03 10:50:10] 2026-03-03 09:39:37,961 | INFO     | pid: 2772084
[2026-03-03 10:50:10] 2026-03-03 09:39:37,961 | INFO     | pgrp: 2772084
[2026-03-03 10:50:10] 2026-03-03 09:39:37,961 | INFO     | corecount: 4
[2026-03-03 10:50:10] 2026-03-03 09:39:37,961 | INFO     | event service: False
[2026-03-03 10:50:10] 2026-03-03 09:39:37,961 | INFO     | sizes: {0: 2281156, 1: 2282285, 12: 2282285, 10565: 2311530, 10567: 2320606, 10569: 2320808}
[2026-03-03 10:50:10] 2026-03-03 09:39:37,961 | INFO     | --------------------------------------------------
[2026-03-03 10:50:10] 2026-03-03 09:39:37,961 | INFO     | 
[2026-03-03 10:50:10] 2026-03-03 09:39:37,962 | INFO     | executing command: ls -lF /scratch/boinc/var/slot68/slots/0
[2026-03-03 10:50:10] 2026-03-03 09:39:37,991 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-03 10:50:10] 2026-03-03 09:39:37,991 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-03 10:50:10] 2026-03-03 09:39:37,991 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-03 10:50:10] 2026-03-03 09:39:37,991 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-03 10:50:10] 2026-03-03 09:39:37,991 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-03 10:50:10] 2026-03-03 09:39:37,991 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-03 10:50:10] 2026-03-03 09:39:37,992 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-03 10:50:10] 2026-03-03 09:39:37,992 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-03 10:50:10] 2026-03-03 09:39:37,992 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-03 10:50:10] 2026-03-03 09:39:37,992 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-03 10:50:10] 2026-03-03 09:39:37,992 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-03 10:50:10] 2026-03-03 09:39:37,992 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-03 10:50:10] 2026-03-03 09:39:37,992 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-03 10:50:10] 2026-03-03 09:39:37,992 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-03 10:50:10] 2026-03-03 09:39:37,992 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-03 10:50:10] 2026-03-03 09:39:37,992 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-03 10:50:10] 2026-03-03 09:39:37,992 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-03 10:50:10] 2026-03-03 09:39:37,993 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-03 10:50:10] 2026-03-03 09:39:37,993 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-03 10:50:10] 2026-03-03 09:39:37,993 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-03 10:50:10] 2026-03-03 09:39:37,993 | INFO     | job 7032912328 has completed (purged errors)
[2026-03-03 10:50:10] 2026-03-03 09:39:37,993 | INFO     | overall cleanup function is called
[2026-03-03 10:50:10] 2026-03-03 09:39:38,957 | INFO     | PID=2745226 has CPU usage=15.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-03 10:50:10] 2026-03-03 09:39:38,957 | INFO     | .. there are 10 such processes running
[2026-03-03 10:50:10] 2026-03-03 09:39:39,002 | INFO     | --- collectZombieJob: --- 10, [2772084]
[2026-03-03 10:50:10] 2026-03-03 09:39:39,002 | INFO     | zombie collector waiting for pid 2772084
[2026-03-03 10:50:10] 2026-03-03 09:39:39,003 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-03 10:50:10] 2026-03-03 09:39:39,003 | INFO     | collected zombie processes
[2026-03-03 10:50:10] 2026-03-03 09:39:39,003 | INFO     | will attempt to kill all subprocesses of pid=2772084
[2026-03-03 10:50:10] 2026-03-03 09:39:39,690 | INFO     | process IDs to be killed: [2772084] (in reverse order)
[2026-03-03 10:50:10] 2026-03-03 09:39:39,952 | WARNING  | found no corresponding commands to process id(s)
[2026-03-03 10:50:10] 2026-03-03 09:39:39,952 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-03 10:50:10] 2026-03-03 09:39:39,979 | INFO     | did not find any defunct processes belonging to 2772084
[2026-03-03 10:50:10] 2026-03-03 09:39:40,000 | INFO     | did not find any defunct processes belonging to 2772084
[2026-03-03 10:50:10] 2026-03-03 09:39:40,000 | INFO     | ready for new job
[2026-03-03 10:50:10] 2026-03-03 09:39:40,001 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-03 10:50:10] 2026-03-03 09:39:40,003 | INFO     | **************************************
[2026-03-03 10:50:10] 2026-03-03 09:39:40,003 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-03 10:50:10] 2026-03-03 09:39:40,003 | INFO     | **************************************
[2026-03-03 10:50:10] 2026-03-03 09:39:40,003 | INFO     | 
[2026-03-03 10:50:10] 2026-03-03 09:39:40,011 | INFO     | architecture information:
[2026-03-03 10:50:10] 2026-03-03 09:39:40,011 | INFO     | executing command: cat /etc/os-release
[2026-03-03 10:50:10] 2026-03-03 09:39:40,034 | INFO     | cat /etc/os-release:
[2026-03-03 10:50:10] NAME="CentOS Linux"
[2026-03-03 10:50:10] VERSION="7 (Core)"
[2026-03-03 10:50:10] ID="centos"
[2026-03-03 10:50:10] ID_LIKE="rhel fedora"
[2026-03-03 10:50:10] VERSION_ID="7"
[2026-03-03 10:50:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-03 10:50:10] ANSI_COLOR="0;31"
[2026-03-03 10:50:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-03 10:50:10] HOME_URL="https://www.centos.org/"
[2026-03-03 10:50:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-03 10:50:10] 
[2026-03-03 10:50:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-03 10:50:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-03 10:50:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-03 10:50:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-03 10:50:10] 
[2026-03-03 10:50:10] 2026-03-03 09:39:40,035 | INFO     | **************************************
[2026-03-03 10:50:10] 2026-03-03 09:39:40,538 | INFO     | executing command: df -mP /scratch/boinc/var/slot68/slots/0
[2026-03-03 10:50:10] 2026-03-03 09:39:40,561 | INFO     | sufficient remaining disk space (3323926151168 B)
[2026-03-03 10:50:10] 2026-03-03 09:39:40,561 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-03 10:50:10] 2026-03-03 09:39:40,561 | INFO     | current server update state: UPDATING_FINAL
[2026-03-03 10:50:10] 2026-03-03 09:39:40,561 | INFO     | update_server=False
[2026-03-03 10:50:10] 2026-03-03 09:39:40,561 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-03 10:50:10] 2026-03-03 09:39:40,645 | INFO     | job.realtimelogging is not enabled
[2026-03-03 10:50:10] 2026-03-03 09:39:40,695 | INFO     | all job control threads have been joined
[2026-03-03 10:50:10] 2026-03-03 09:39:41,416 | INFO     | all data control threads have been joined
[2026-03-03 10:50:10] 2026-03-03 09:39:41,493 | INFO     | all payload control threads have been joined
[2026-03-03 10:50:10] 2026-03-03 09:39:41,567 | INFO     | [job] retrieve thread has finished
[2026-03-03 10:50:10] 2026-03-03 09:39:41,602 | INFO     | [payload] execute_payloads thread has finished
[2026-03-03 10:50:10] 2026-03-03 09:39:41,651 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-03 10:50:10] 2026-03-03 09:39:41,701 | INFO     | [job] control thread has finished
[2026-03-03 10:50:10] 2026-03-03 09:39:41,778 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-03 10:50:10] 2026-03-03 09:39:41,798 | WARNING  | process 2772084 can no longer be monitored (due to stat problems) - aborting
[2026-03-03 10:50:10] 2026-03-03 09:39:41,800 | INFO     | [job] validate thread has finished
[2026-03-03 10:50:10] 2026-03-03 09:39:41,884 | INFO     | [payload] failed_post thread has finished
[2026-03-03 10:50:10] 2026-03-03 09:39:42,101 | INFO     | [payload] validate_post thread has finished
[2026-03-03 10:50:10] 2026-03-03 09:39:42,145 | INFO     | [job] create_data_payload thread has finished
[2026-03-03 10:50:10] 2026-03-03 09:39:42,295 | INFO     | using path: /scratch/boinc/var/slot68/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-03 10:50:10] 2026-03-03 09:39:42,380 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-03 10:50:10] 2026-03-03 09:39:42,422 | INFO     | [data] control thread has finished
[2026-03-03 10:50:10] 2026-03-03 09:39:42,467 | INFO     | [payload] validate_pre thread has finished
[2026-03-03 10:50:10] 2026-03-03 09:39:42,499 | INFO     | [payload] control thread has finished
[2026-03-03 10:50:10] 2026-03-03 09:39:42,966 | INFO     | number of running child processes to parent process 2772084: 1
[2026-03-03 10:50:10] 2026-03-03 09:39:42,967 | INFO     | maximum number of monitored processes: 6
[2026-03-03 10:50:10] 2026-03-03 09:39:42,967 | INFO     | aborting job monitoring since job object (job id=7032912328) has expired
[2026-03-03 10:50:10] 2026-03-03 09:39:42,967 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-03 10:50:10] 2026-03-03 09:39:42,967 | INFO     | will abort loop
[2026-03-03 10:50:10] 2026-03-03 09:39:42,969 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-03 10:50:10] 2026-03-03 09:39:42,979 | INFO     | [data] copytool_in thread has finished
[2026-03-03 10:50:10] 2026-03-03 09:39:43,782 | INFO     | [data] copytool_out thread has finished
[2026-03-03 10:50:10] 2026-03-03 09:39:43,972 | INFO     | [job] job monitor thread has finished
[2026-03-03 10:50:10] 2026-03-03 09:39:43,974 | INFO     | [job] queue monitor thread has finished
[2026-03-03 10:50:10] 2026-03-03 09:39:46,386 | INFO     | [data] queue_monitor thread has finished
[2026-03-03 10:50:10] 2026-03-03 09:40:11,843 | INFO     | PID=2745226 has CPU usage=10.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-03 10:50:10] 2026-03-03 09:40:11,844 | INFO     | .. there are 10 such processes running
[2026-03-03 10:50:10] 2026-03-03 09:40:11,844 | INFO     | found 0 job(s) in 20 queues
[2026-03-03 10:50:10] 2026-03-03 09:40:11,844 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-03 10:50:10] 2026-03-03 09:40:11,844 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-03 10:50:10] 2026-03-03 09:40:34,238 | INFO     | [monitor] cgroup control has ended
[2026-03-03 10:50:10] 2026-03-03 09:40:35,926 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23076200888128)>', '<ExcThread(monitor, started 23075954620160)>']
[2026-03-03 10:50:10] 2026-03-03 09:40:35,952 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-03 10:50:10] 2026-03-03 09:40:35,952 | INFO     | [monitor] control thread has ended
[2026-03-03 10:50:10] 2026-03-03 09:40:40,952 | INFO     | all workflow threads have been joined
[2026-03-03 10:50:10] 2026-03-03 09:40:40,953 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-03 10:50:10] 2026-03-03 09:40:40,953 | INFO     | traces error code: 0
[2026-03-03 10:50:10] 2026-03-03 09:40:40,953 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-03 10:50:10] 2026-03-03 09:40:41,120 [wrapper] ==== pilot stdout END ====
[2026-03-03 10:50:10] 2026-03-03 09:40:41,123 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-03 10:50:10] 2026-03-03 09:40:41,127 [wrapper] pilotpid: 2745226
[2026-03-03 10:50:10] 2026-03-03 09:40:41,131 [wrapper] Pilot exit status: 0
[2026-03-03 10:50:10] 2026-03-03 09:40:41,143 [wrapper] pandaids: 7032912328
[2026-03-03 10:50:10] 2026-03-03 09:40:41,311 [wrapper] cleanup supervisor_pilot 2912270 2745227
[2026-03-03 10:50:10] 2026-03-03 09:40:41,316 [wrapper] Test setup, not cleaning
[2026-03-03 10:50:10] 2026-03-03 09:40:41,319 [wrapper] apfmon messages muted
[2026-03-03 10:50:10] 2026-03-03 09:40:41,323 [wrapper] ==== wrapper stdout END ====
[2026-03-03 10:50:10] 2026-03-03 09:40:41,328 [wrapper] ==== wrapper stderr END ====
[2026-03-03 10:50:10]  *** Error codes and diagnostics ***
[2026-03-03 10:50:10]     "exeErrorCode": 0,
[2026-03-03 10:50:10]     "exeErrorDiag": "",
[2026-03-03 10:50:10]     "pilotErrorCode": 0,
[2026-03-03 10:50:10]     "pilotErrorDiag": "",
[2026-03-03 10:50:10]  *** Listing of results directory ***
[2026-03-03 10:50:10] total 484824
[2026-03-03 10:50:10] -rw-r--r-- 1 boinc boinc      5111 Feb 28 09:11 queuedata.json
[2026-03-03 10:50:10] -rw-r--r-- 1 boinc boinc    584627 Feb 28 09:11 pilot3.tar.gz
[2026-03-03 10:50:10] -rwx------ 1 boinc boinc     36322 Feb 28 09:11 runpilot2-wrapper.sh
[2026-03-03 10:50:10] -rw-r--r-- 1 boinc boinc       100 Mar  3 07:42 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-03 10:50:10] -rwxr-xr-x 1 boinc boinc      7986 Mar  3 07:42 run_atlas
[2026-03-03 10:50:10] -rw-r--r-- 1 boinc boinc       105 Mar  3 07:42 job.xml
[2026-03-03 10:50:10] -rw-r--r-- 2 boinc boinc 278449600 Mar  3 07:42 EVNT.48220149._000027.pool.root.1
[2026-03-03 10:50:10] -rw-r--r-- 1 boinc boinc      6697 Mar  3 07:42 init_data.xml
[2026-03-03 10:50:10] -rw-r--r-- 2 boinc boinc     15845 Mar  3 07:42 start_atlas.sh
[2026-03-03 10:50:10] drwxrwx--x 2 boinc boinc      4096 Mar  3 07:42 shared
[2026-03-03 10:50:10] -rw-r--r-- 2 boinc boinc    597983 Mar  3 07:42 input.tar.gz
[2026-03-03 10:50:10] -rw-r--r-- 1 boinc boinc         0 Mar  3 07:42 boinc_lockfile
[2026-03-03 10:50:10] -rw-r--r-- 1 boinc boinc      2587 Mar  3 07:42 pandaJob.out
[2026-03-03 10:50:10] -rw------- 1 boinc boinc    998412 Mar  3 07:43 agis_schedconf.cvmfs.json
[2026-03-03 10:50:10] -rw------- 1 boinc boinc   1512931 Mar  3 07:43 agis_ddmendpoints.agis.ALL.json
[2026-03-03 10:50:10] -rw------- 1 boinc boinc       443 Mar  3 07:43 workernode_map.json
[2026-03-03 10:50:10] drwx------ 5 boinc boinc      4096 Mar  3 07:43 pilot3
[2026-03-03 10:50:10] -rw------- 1 boinc boinc 210435618 Mar  3 10:39 HITS.48838476._000694.pool.root.1
[2026-03-03 10:50:10] -rw------- 1 boinc boinc        95 Mar  3 10:39 pilot_heartbeat.json
[2026-03-03 10:50:10] -rw-r--r-- 1 boinc boinc       527 Mar  3 10:39 boinc_task_state.xml
[2026-03-03 10:50:10] -rw------- 1 boinc boinc      1025 Mar  3 10:39 memory_monitor_summary.json
[2026-03-03 10:50:10] -rw------- 1 boinc boinc    361689 Mar  3 10:39 log.48838476._000694.job.log.tgz.1
[2026-03-03 10:50:10] -rw------- 1 boinc boinc      6342 Mar  3 10:39 heartbeat.json
[2026-03-03 10:50:10] -rw------- 1 boinc boinc      5436 Mar  3 10:40 pilotlog.txt
[2026-03-03 10:50:10] -rw------- 1 boinc boinc   1460824 Mar  3 10:40 log.48838476._000694.job.log.1
[2026-03-03 10:50:10] -rw------- 1 boinc boinc       357 Mar  3 10:40 output.list
[2026-03-03 10:50:10] -rw-r--r-- 1 boinc boinc       620 Mar  3 10:40 runtime_log
[2026-03-03 10:50:10] -rw------- 1 boinc boinc   1843200 Mar  3 10:40 result.tar.gz
[2026-03-03 10:50:10] -rw-r--r-- 1 boinc boinc      9205 Mar  3 10:40 runtime_log.err
[2026-03-03 10:50:10] -rw------- 1 boinc boinc       665 Mar  3 10:40 puhKDmdbUG9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmHe6KDm1JK1Co.diag
[2026-03-03 10:50:10] -rw-r--r-- 1 boinc boinc        25 Mar  3 10:49 wrapper_checkpoint.txt
[2026-03-03 10:50:10] -rw-r--r-- 1 boinc boinc      8192 Mar  3 10:50 boinc_mmap_file
[2026-03-03 10:50:10] -rw-r--r-- 1 boinc boinc     21189 Mar  3 10:50 stderr.txt
[2026-03-03 10:50:10] HITS file was successfully produced:
[2026-03-03 10:50:10] -rw------- 1 boinc boinc 210435618 Mar  3 10:39 shared/HITS.pool.root.1
[2026-03-03 10:50:10]  *** Contents of shared directory: ***
[2026-03-03 10:50:10] total 479836
[2026-03-03 10:50:10] -rw-r--r-- 2 boinc boinc 278449600 Mar  3 07:42 ATLAS.root_0
[2026-03-03 10:50:10] -rw-r--r-- 2 boinc boinc     15845 Mar  3 07:42 start_atlas.sh
[2026-03-03 10:50:10] -rw-r--r-- 2 boinc boinc    597983 Mar  3 07:42 input.tar.gz
[2026-03-03 10:50:10] -rw------- 1 boinc boinc 210435618 Mar  3 10:39 HITS.pool.root.1
[2026-03-03 10:50:10] -rw------- 1 boinc boinc   1843200 Mar  3 10:40 result.tar.gz
10:50:11 (2727452): run_atlas exited; CPU time 40369.909547
10:50:11 (2727452): called boinc_finish(0)

</stderr_txt>
]]>

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