Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:53:23 (9291): wrapper (7.7.26015): starting
19:53:23 (9291): wrapper: running run_atlas (--nthreads 8)
[2026-02-28 19:53:23] Arguments: --nthreads 8
[2026-02-28 19:53:23] Threads: 8
[2026-02-28 19:53:23] Checking for CVMFS
[2026-02-28 19:53:24] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-28 19:53:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-28 19:53:25] Running cvmfs_config stat atlas.cern.ch
[2026-02-28 19:53:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-28 19:53:26] 2.11.2.0 10929 107782 132336 156741 1 55 24359919 25165825 899 130560 158 34971280 99.840 20792592 765 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-02-28 19:53:26] CVMFS is ok
[2026-02-28 19:53:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-28 19:53:26] Checking for apptainer binary...
[2026-02-28 19:53:26] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-28 19:53:26] Running /usr/bin/apptainer --version
[2026-02-28 19:53:27] apptainer version 1.3.2-1.el7
[2026-02-28 19:53:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-28 19:53:55] cg-vwn424.simple-grid.lan
[2026-02-28 19:53:55] apptainer works
[2026-02-28 19:53:55] Set ATHENA_PROC_NUMBER=8
[2026-02-28 19:53:55] Set ATHENA_CORE_NUMBER=8
[2026-02-28 19:53:55] Starting ATLAS job with PandaID=7032912052
[2026-02-28 19:53:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-01 00:56:02]  *** The last 200 lines of the pilot log: ***
[2026-03-01 00:56:02] 2026-02-28 23:54:49,544 | INFO     | total number of processed events: 400 (read)
[2026-03-01 00:56:02] 2026-02-28 23:54:49,546 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-7032912052/memory_monitor_summary.json (trf name=prmon)
[2026-03-01 00:56:02] 2026-02-28 23:54:49,546 | INFO     | extracted standard info from prmon json
[2026-03-01 00:56:02] 2026-02-28 23:54:49,547 | INFO     | extracted standard memory fields from prmon json
[2026-03-01 00:56:02] 2026-02-28 23:54:49,547 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-01 00:56:02] 2026-02-28 23:54:49,547 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-01 00:56:02] 2026-02-28 23:54:49,547 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-01 00:56:02] 2026-02-28 23:54:49,553 | INFO     | fitting pss+swap vs Time
[2026-03-01 00:56:02] 2026-02-28 23:54:49,554 | INFO     | sum of square deviations: 7178069470.0
[2026-03-01 00:56:02] 2026-02-28 23:54:49,557 | INFO     | sum of deviations: 168530163465.0
[2026-03-01 00:56:02] 2026-02-28 23:54:49,557 | INFO     | mean x: 1772314193.0
[2026-03-01 00:56:02] 2026-02-28 23:54:49,557 | INFO     | mean y: 2450502.5263157897
[2026-03-01 00:56:02] 2026-02-28 23:54:49,557 | INFO     | intersect: -41608793566.086685
[2026-03-01 00:56:02] 2026-02-28 23:54:49,558 | INFO     | chi2: 8.790688715992905
[2026-03-01 00:56:02] 2026-02-28 23:54:49,558 | INFO     | sum of square deviations: 6806862510.0
[2026-03-01 00:56:02] 2026-02-28 23:54:49,561 | INFO     | sum of deviations: 184539830320.0
[2026-03-01 00:56:02] 2026-02-28 23:54:49,564 | INFO     | mean x: 1772314040.5
[2026-03-01 00:56:02] 2026-02-28 23:54:49,564 | INFO     | mean y: 2456968.1357142855
[2026-03-01 00:56:02] 2026-02-28 23:54:49,565 | INFO     | intersect: -48046483616.03713
[2026-03-01 00:56:02] 2026-02-28 23:54:49,565 | INFO     | chi2: 8.08066643170384
[2026-03-01 00:56:02] 2026-02-28 23:54:49,565 | INFO     | current chi2=8.08066643170384 (change=8.076981306337485 %)
[2026-03-01 00:56:02] 2026-02-28 23:54:49,565 | INFO     | right removable region: 279
[2026-03-01 00:56:02] 2026-02-28 23:54:49,566 | INFO     | sum of square deviations: 6806862510.0
[2026-03-01 00:56:02] 2026-02-28 23:54:49,569 | INFO     | sum of deviations: 67991127070.500015
[2026-03-01 00:56:02] 2026-02-28 23:54:49,569 | INFO     | mean x: 1772314345.5
[2026-03-01 00:56:02] 2026-02-28 23:54:49,569 | INFO     | mean y: 2491785.5107142855
[2026-03-01 00:56:02] 2026-02-28 23:54:49,569 | INFO     | intersect: -17700473376.005463
[2026-03-01 00:56:02] 2026-02-28 23:54:49,570 | INFO     | chi2: 3.769778796267259
[2026-03-01 00:56:02] 2026-02-28 23:54:49,570 | INFO     | current chi2=3.769778796267259 (change=57.11622925051483 %)
[2026-03-01 00:56:02] 2026-02-28 23:54:49,570 | INFO     | sum of square deviations: 6448679050.0
[2026-03-01 00:56:02] 2026-02-28 23:54:49,573 | INFO     | sum of deviations: -8171784663.000002
[2026-03-01 00:56:02] 2026-02-28 23:54:49,573 | INFO     | mean x: 1772314498.0
[2026-03-01 00:56:02] 2026-02-28 23:54:49,573 | INFO     | mean y: 2524172.669090909
[2026-03-01 00:56:02] 2026-02-28 23:54:49,573 | INFO     | intersect: 2248406208.427863
[2026-03-01 00:56:02] 2026-02-28 23:54:49,574 | INFO     | chi2: 1.0677740402057956
[2026-03-01 00:56:02] 2026-02-28 23:54:49,574 | INFO     | current chi2=1.0677740402057956 (change=71.6754192245158 %)
[2026-03-01 00:56:02] 2026-02-28 23:54:49,574 | INFO     | sum of square deviations: 6103286527.5
[2026-03-01 00:56:02] 2026-02-28 23:54:49,577 | INFO     | sum of deviations: -30656690822.0
[2026-03-01 00:56:02] 2026-02-28 23:54:49,577 | INFO     | mean x: 1772314650.5
[2026-03-01 00:56:02] 2026-02-28 23:54:49,577 | INFO     | mean y: 2534065.1333333333
[2026-03-01 00:56:02] 2026-02-28 23:54:49,577 | INFO     | intersect: 8904836461.5334
[2026-03-01 00:56:02] 2026-02-28 23:54:49,578 | INFO     | chi2: 0.8018691030892344
[2026-03-01 00:56:02] 2026-02-28 23:54:49,578 | INFO     | current chi2=0.8018691030892344 (change=24.902734764493097 %)
[2026-03-01 00:56:02] 2026-02-28 23:54:49,578 | INFO     | left removable region: 30
[2026-03-01 00:56:02] 2026-02-28 23:54:49,579 | INFO     | sum of square deviations: 4787066500.0
[2026-03-01 00:56:02] 2026-02-28 23:54:49,581 | INFO     | sum of deviations: -11916647009.0
[2026-03-01 00:56:02] 2026-02-28 23:54:49,581 | INFO     | mean x: 1772314925.0
[2026-03-01 00:56:02] 2026-02-28 23:54:49,581 | INFO     | mean y: 2542415.8393574296
[2026-03-01 00:56:02] 2026-02-28 23:54:49,581 | INFO     | intersect: 4414440882.260768
[2026-03-01 00:56:02] 2026-02-28 23:54:49,582 | INFO     | chi2: 0.012916607047176993
[2026-03-01 00:56:02] 2026-02-28 23:54:49,582 | INFO     | current memory leak: -2.49 B/s (using 249 data points, chi2=0.01)
[2026-03-01 00:56:02] 2026-02-28 23:54:49,583 | INFO     | could have reported an average CPU frequency of 1999 MHz (13 samples)
[2026-03-01 00:56:02] 2026-02-28 23:54:49,583 | INFO     | ..............................
[2026-03-01 00:56:02] 2026-02-28 23:54:49,583 | INFO     | . Timing measurements:
[2026-03-01 00:56:02] 2026-02-28 23:54:49,583 | INFO     | . get job = 0 s
[2026-03-01 00:56:02] 2026-02-28 23:54:49,583 | INFO     | . initial setup = 118 s
[2026-03-01 00:56:02] 2026-02-28 23:54:49,583 | INFO     | . payload setup = 149 s
[2026-03-01 00:56:02] 2026-02-28 23:54:49,583 | INFO     | . stage-in = 0 s
[2026-03-01 00:56:02] 2026-02-28 23:54:49,584 | INFO     | . payload execution = 17494 s
[2026-03-01 00:56:02] 2026-02-28 23:54:49,584 | INFO     | . stage-out = 3 s
[2026-03-01 00:56:02] 2026-02-28 23:54:49,584 | INFO     | . log creation = 1 s
[2026-03-01 00:56:02] 2026-02-28 23:54:49,584 | INFO     | ..............................
[2026-03-01 00:56:02] 2026-02-28 23:54:49,777 | INFO     | 
[2026-03-01 00:56:02] 2026-02-28 23:54:49,778 | INFO     | job summary report
[2026-03-01 00:56:02] 2026-02-28 23:54:49,778 | INFO     | --------------------------------------------------
[2026-03-01 00:56:02] 2026-02-28 23:54:49,778 | INFO     | PanDA job id: 7032912052
[2026-03-01 00:56:02] 2026-02-28 23:54:49,778 | INFO     | task id: 48838476
[2026-03-01 00:56:02] 2026-02-28 23:54:49,778 | INFO     | errors: (none)
[2026-03-01 00:56:02] 2026-02-28 23:54:49,778 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-01 00:56:02] 2026-02-28 23:54:49,778 | INFO     | pilot state: finished 
[2026-03-01 00:56:02] 2026-02-28 23:54:49,778 | INFO     | transexitcode: 0
[2026-03-01 00:56:02] 2026-02-28 23:54:49,778 | INFO     | exeerrorcode: 0
[2026-03-01 00:56:02] 2026-02-28 23:54:49,779 | INFO     | exeerrordiag: 
[2026-03-01 00:56:02] 2026-02-28 23:54:49,779 | INFO     | exitcode: 0
[2026-03-01 00:56:02] 2026-02-28 23:54:49,779 | INFO     | exitmsg: OK
[2026-03-01 00:56:02] 2026-02-28 23:54:49,779 | INFO     | cpuconsumptiontime: 66107 s
[2026-03-01 00:56:02] 2026-02-28 23:54:49,779 | INFO     | nevents: 400
[2026-03-01 00:56:02] 2026-02-28 23:54:49,779 | INFO     | neventsw: 0
[2026-03-01 00:56:02] 2026-02-28 23:54:49,779 | INFO     | pid: 17717
[2026-03-01 00:56:02] 2026-02-28 23:54:49,779 | INFO     | pgrp: 17717
[2026-03-01 00:56:02] 2026-02-28 23:54:49,779 | INFO     | corecount: 8
[2026-03-01 00:56:02] 2026-02-28 23:54:49,780 | INFO     | event service: False
[2026-03-01 00:56:02] 2026-02-28 23:54:49,780 | INFO     | sizes: {0: 2281151, 1: 2281836, 2: 2282297, 13: 2282297, 17647: 2314512, 17651: 2323510, 17653: 2323694, 17655: 2323888}
[2026-03-01 00:56:02] 2026-02-28 23:54:49,780 | INFO     | --------------------------------------------------
[2026-03-01 00:56:02] 2026-02-28 23:54:49,780 | INFO     | 
[2026-03-01 00:56:02] 2026-02-28 23:54:49,780 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2026-03-01 00:56:02] 2026-02-28 23:54:50,279 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-01 00:56:02] 2026-02-28 23:54:50,279 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-01 00:56:02] 2026-02-28 23:54:50,279 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-01 00:56:02] 2026-02-28 23:54:50,279 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-01 00:56:02] 2026-02-28 23:54:50,280 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-01 00:56:02] 2026-02-28 23:54:50,280 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-01 00:56:02] 2026-02-28 23:54:50,280 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-01 00:56:02] 2026-02-28 23:54:50,280 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-01 00:56:02] 2026-02-28 23:54:50,280 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-01 00:56:02] 2026-02-28 23:54:50,280 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-01 00:56:02] 2026-02-28 23:54:50,280 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-01 00:56:02] 2026-02-28 23:54:50,280 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-01 00:56:02] 2026-02-28 23:54:50,280 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-01 00:56:02] 2026-02-28 23:54:50,281 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-01 00:56:02] 2026-02-28 23:54:50,281 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-01 00:56:02] 2026-02-28 23:54:50,281 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-01 00:56:02] 2026-02-28 23:54:50,281 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-01 00:56:02] 2026-02-28 23:54:50,281 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-01 00:56:02] 2026-02-28 23:54:50,281 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-01 00:56:02] 2026-02-28 23:54:50,281 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-01 00:56:02] 2026-02-28 23:54:50,281 | INFO     | job 7032912052 has completed (purged errors)
[2026-03-01 00:56:02] 2026-02-28 23:54:50,282 | INFO     | overall cleanup function is called
[2026-03-01 00:56:02] 2026-02-28 23:54:51,290 | INFO     | --- collectZombieJob: --- 10, [17717]
[2026-03-01 00:56:02] 2026-02-28 23:54:51,290 | INFO     | zombie collector waiting for pid 17717
[2026-03-01 00:56:02] 2026-02-28 23:54:51,291 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-01 00:56:02] 2026-02-28 23:54:51,291 | INFO     | collected zombie processes
[2026-03-01 00:56:02] 2026-02-28 23:54:51,291 | INFO     | will attempt to kill all subprocesses of pid=17717
[2026-03-01 00:56:02] 2026-02-28 23:54:51,385 | INFO     | process IDs to be killed: [17717] (in reverse order)
[2026-03-01 00:56:02] 2026-02-28 23:54:52,144 | WARNING  | found no corresponding commands to process id(s)
[2026-03-01 00:56:02] 2026-02-28 23:54:52,144 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-01 00:56:02] 2026-02-28 23:54:52,146 | INFO     | did not find any defunct processes belonging to 17717
[2026-03-01 00:56:02] 2026-02-28 23:54:52,148 | INFO     | did not find any defunct processes belonging to 17717
[2026-03-01 00:56:02] 2026-02-28 23:54:52,148 | INFO     | ready for new job
[2026-03-01 00:56:02] 2026-02-28 23:54:52,148 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-01 00:56:02] 2026-02-28 23:54:52,151 | INFO     | **************************************
[2026-03-01 00:56:02] 2026-02-28 23:54:52,151 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-01 00:56:02] 2026-02-28 23:54:52,151 | INFO     | **************************************
[2026-03-01 00:56:02] 2026-02-28 23:54:52,151 | INFO     | 
[2026-03-01 00:56:02] 2026-02-28 23:54:52,152 | INFO     | pilot is running in a VM
[2026-03-01 00:56:02] 2026-02-28 23:54:52,152 | INFO     | architecture information:
[2026-03-01 00:56:02] 2026-02-28 23:54:52,159 | INFO     | executing command: cat /etc/os-release
[2026-03-01 00:56:02] 2026-02-28 23:54:52,431 | INFO     | cat /etc/os-release:
[2026-03-01 00:56:02] NAME="CentOS Linux"
[2026-03-01 00:56:02] VERSION="7 (Core)"
[2026-03-01 00:56:02] ID="centos"
[2026-03-01 00:56:02] ID_LIKE="rhel fedora"
[2026-03-01 00:56:02] VERSION_ID="7"
[2026-03-01 00:56:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-01 00:56:02] ANSI_COLOR="0;31"
[2026-03-01 00:56:02] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-01 00:56:02] HOME_URL="https://www.centos.org/"
[2026-03-01 00:56:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-01 00:56:02] 
[2026-03-01 00:56:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-01 00:56:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-01 00:56:02] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-01 00:56:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-01 00:56:02] 
[2026-03-01 00:56:02] 2026-02-28 23:54:52,431 | INFO     | **************************************
[2026-03-01 00:56:02] 2026-02-28 23:54:52,934 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2026-03-01 00:56:02] 2026-02-28 23:54:53,116 | INFO     | sufficient remaining disk space (497459134464 B)
[2026-03-01 00:56:02] 2026-02-28 23:54:53,117 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-01 00:56:02] 2026-02-28 23:54:53,117 | INFO     | current server update state: UPDATING_FINAL
[2026-03-01 00:56:02] 2026-02-28 23:54:53,117 | INFO     | update_server=False
[2026-03-01 00:56:02] 2026-02-28 23:54:53,117 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-01 00:56:02] 2026-02-28 23:54:53,165 | INFO     | all payload control threads have been joined
[2026-03-01 00:56:02] 2026-02-28 23:54:53,244 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-01 00:56:02] 2026-02-28 23:54:53,315 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-01 00:56:02] 2026-02-28 23:54:53,445 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-01 00:56:02] 2026-02-28 23:54:53,446 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-01 00:56:02] 2026-02-28 23:54:53,446 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-01 00:56:02] 2026-02-28 23:54:53,446 | INFO     | will abort loop
[2026-03-01 00:56:02] 2026-02-28 23:54:53,684 | INFO     | all data control threads have been joined
[2026-03-01 00:56:02] 2026-02-28 23:54:53,887 | INFO     | all job control threads have been joined
[2026-03-01 00:56:02] 2026-02-28 23:54:54,123 | INFO     | [job] retrieve thread has finished
[2026-03-01 00:56:02] 2026-02-28 23:54:54,171 | INFO     | [payload] control thread has finished
[2026-03-01 00:56:02] 2026-02-28 23:54:54,284 | INFO     | [payload] execute_payloads thread has finished
[2026-03-01 00:56:02] 2026-02-28 23:54:54,293 | INFO     | [payload] failed_post thread has finished
[2026-03-01 00:56:02] 2026-02-28 23:54:54,451 | INFO     | [job] job monitor thread has finished
[2026-03-01 00:56:02] 2026-02-28 23:54:54,466 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-01 00:56:02] 2026-02-28 23:54:54,690 | INFO     | [data] control thread has finished
[2026-03-01 00:56:02] 2026-02-28 23:54:54,730 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-01 00:56:02] 2026-02-28 23:54:54,798 | INFO     | [payload] validate_pre thread has finished
[2026-03-01 00:56:02] 2026-02-28 23:54:54,893 | INFO     | [job] control thread has finished
[2026-03-01 00:56:02] 2026-02-28 23:54:55,030 | INFO     | [data] copytool_in thread has finished
[2026-03-01 00:56:02] 2026-02-28 23:54:55,198 | INFO     | [payload] validate_post thread has finished
[2026-03-01 00:56:02] 2026-02-28 23:54:55,251 | INFO     | [data] copytool_out thread has finished
[2026-03-01 00:56:02] 2026-02-28 23:54:55,337 | INFO     | [job] validate thread has finished
[2026-03-01 00:56:02] 2026-02-28 23:54:55,578 | INFO     | [job] create_data_payload thread has finished
[2026-03-01 00:56:02] 2026-02-28 23:54:55,736 | INFO     | [job] queue monitor thread has finished
[2026-03-01 00:56:02] 2026-02-28 23:54:57,324 | INFO     | [data] queue_monitor thread has finished
[2026-03-01 00:56:02] 2026-02-28 23:55:22,353 | INFO     | PID=13273 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-01 00:56:02] 2026-02-28 23:55:22,353 | INFO     | .. there are 2 such processes running
[2026-03-01 00:56:02] 2026-02-28 23:55:22,353 | INFO     | found 0 job(s) in 20 queues
[2026-03-01 00:56:02] 2026-02-28 23:55:22,353 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-01 00:56:02] 2026-02-28 23:55:22,354 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-01 00:56:02] 2026-02-28 23:55:51,135 | INFO     | [monitor] cgroup control has ended
[2026-03-01 00:56:02] 2026-02-28 23:55:51,899 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140594841372480)>', '<ExcThread(monitor, started 140594623047424)>']
[2026-03-01 00:56:02] 2026-02-28 23:55:52,534 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-01 00:56:02] 2026-02-28 23:55:52,535 | INFO     | [monitor] control thread has ended
[2026-03-01 00:56:02] 2026-02-28 23:55:56,925 | INFO     | all workflow threads have been joined
[2026-03-01 00:56:02] 2026-02-28 23:55:56,926 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-01 00:56:02] 2026-02-28 23:55:56,926 | INFO     | traces error code: 0
[2026-03-01 00:56:02] 2026-02-28 23:55:56,926 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-01 00:56:02] 2026-02-28 23:55:57,330 [wrapper] ==== pilot stdout END ====
[2026-03-01 00:56:02] 2026-02-28 23:55:57,440 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-01 00:56:02] 2026-02-28 23:55:57,529 [wrapper] pilotpid: 13273
[2026-03-01 00:56:02] 2026-02-28 23:55:57,627 [wrapper] Pilot exit status: 0
[2026-03-01 00:56:02] 2026-02-28 23:55:58,182 [wrapper] pandaids: 7032912052
[2026-03-01 00:56:02] 2026-02-28 23:55:59,201 [wrapper] cleanup supervisor_pilot 23879 13274
[2026-03-01 00:56:02] 2026-02-28 23:55:59,330 [wrapper] Test setup, not cleaning
[2026-03-01 00:56:02] 2026-02-28 23:55:59,431 [wrapper] apfmon messages muted
[2026-03-01 00:56:02] 2026-02-28 23:55:59,520 [wrapper] ==== wrapper stdout END ====
[2026-03-01 00:56:02] 2026-02-28 23:55:59,600 [wrapper] ==== wrapper stderr END ====
[2026-03-01 00:56:02]  *** Error codes and diagnostics ***
[2026-03-01 00:56:02]     "exeErrorCode": 0,
[2026-03-01 00:56:02]     "exeErrorDiag": "",
[2026-03-01 00:56:02]     "pilotErrorCode": 0,
[2026-03-01 00:56:02]     "pilotErrorDiag": "",
[2026-03-01 00:56:02]  *** Listing of results directory ***
[2026-03-01 00:56:02] total 485484
[2026-03-01 00:56:02] -rw-r--r--. 1 boinc boinc      5111 Feb 28 09:11 queuedata.json
[2026-03-01 00:56:02] -rw-r--r--. 1 boinc boinc    584627 Feb 28 09:11 pilot3.tar.gz
[2026-03-01 00:56:02] -rwx------. 1 boinc boinc     36322 Feb 28 09:11 runpilot2-wrapper.sh
[2026-03-01 00:56:02] -rw-r--r--. 1 boinc boinc       100 Feb 28 19:53 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-01 00:56:02] -rwxr-xr-x. 1 boinc boinc      7986 Feb 28 19:53 run_atlas
[2026-03-01 00:56:02] -rw-r--r--. 1 boinc boinc       105 Feb 28 19:53 job.xml
[2026-03-01 00:56:02] -rw-r--r--. 2 boinc boinc 279867804 Feb 28 19:53 EVNT.48220149._000022.pool.root.1
[2026-03-01 00:56:02] -rw-r--r--. 2 boinc boinc    597982 Feb 28 19:53 input.tar.gz
[2026-03-01 00:56:02] -rw-r--r--. 1 boinc boinc      6390 Feb 28 19:53 init_data.xml
[2026-03-01 00:56:02] -rw-r--r--. 2 boinc boinc     15845 Feb 28 19:53 start_atlas.sh
[2026-03-01 00:56:02] drwxrwx--x. 2 boinc boinc        68 Feb 28 19:53 shared
[2026-03-01 00:56:02] -rw-r--r--. 1 boinc boinc         0 Feb 28 19:53 boinc_lockfile
[2026-03-01 00:56:02] -rw-r--r--. 1 boinc boinc      2585 Feb 28 19:53 pandaJob.out
[2026-03-01 00:56:02] -rw-------. 1 boinc boinc       415 Feb 28 20:00 workernode_map.json
[2026-03-01 00:56:02] -rw-------. 1 boinc boinc    998790 Feb 28 20:00 agis_schedconf.cvmfs.json
[2026-03-01 00:56:02] drwx------. 5 boinc boinc      4096 Feb 28 20:00 pilot3
[2026-03-01 00:56:02] -rw-------. 1 boinc boinc 207420690 Mar  1 00:53 HITS.48838476._000546.pool.root.1
[2026-03-01 00:56:02] -rw-r--r--. 1 boinc boinc       531 Mar  1 00:53 boinc_task_state.xml
[2026-03-01 00:56:02] -rw-------. 1 boinc boinc        95 Mar  1 00:54 pilot_heartbeat.json
[2026-03-01 00:56:02] -rw-------. 1 boinc boinc      1013 Mar  1 00:54 memory_monitor_summary.json
[2026-03-01 00:56:02] -rw-------. 1 boinc boinc   1513015 Mar  1 00:54 agis_ddmendpoints.agis.ALL.json
[2026-03-01 00:56:02] -rw-------. 1 boinc boinc    492994 Mar  1 00:54 log.48838476._000546.job.log.tgz.1
[2026-03-01 00:56:02] -rw-------. 1 boinc boinc      6311 Mar  1 00:54 heartbeat.json
[2026-03-01 00:56:02] -rw-r--r--. 1 boinc boinc      8192 Mar  1 00:55 boinc_mmap_file
[2026-03-01 00:56:02] -rw-r--r--. 1 boinc boinc        28 Mar  1 00:55 wrapper_checkpoint.txt
[2026-03-01 00:56:02] -rw-------. 1 boinc boinc      5066 Mar  1 00:55 pilotlog.txt
[2026-03-01 00:56:02] -rw-------. 1 boinc boinc   2474066 Mar  1 00:55 log.48838476._000546.job.log.1
[2026-03-01 00:56:02] -rw-------. 1 boinc boinc       357 Mar  1 00:56 output.list
[2026-03-01 00:56:02] -rw-r--r--. 1 boinc boinc       620 Mar  1 00:56 runtime_log
[2026-03-01 00:56:02] -rw-------. 1 boinc boinc   2979840 Mar  1 00:56 result.tar.gz
[2026-03-01 00:56:02] -rw-r--r--. 1 boinc boinc      8816 Mar  1 00:56 runtime_log.err
[2026-03-01 00:56:02] -rw-------. 1 boinc boinc       656 Mar  1 00:56 jHvMDmbbUG9n9Rq4apOajLDm4fhM0noT9bVooX4SDmRw4KDmN7sKXn.diag
[2026-03-01 00:56:02] -rw-r--r--. 1 boinc boinc     20652 Mar  1 00:56 stderr.txt
[2026-03-01 00:56:02] HITS file was successfully produced:
[2026-03-01 00:56:02] -rw-------. 1 boinc boinc 207420690 Mar  1 00:53 shared/HITS.pool.root.1
[2026-03-01 00:56:02]  *** Contents of shared directory: ***
[2026-03-01 00:56:02] total 479384
[2026-03-01 00:56:02] -rw-r--r--. 2 boinc boinc 279867804 Feb 28 19:53 ATLAS.root_0
[2026-03-01 00:56:02] -rw-r--r--. 2 boinc boinc    597982 Feb 28 19:53 input.tar.gz
[2026-03-01 00:56:02] -rw-r--r--. 2 boinc boinc     15845 Feb 28 19:53 start_atlas.sh
[2026-03-01 00:56:02] -rw-------. 1 boinc boinc 207420690 Mar  1 00:53 HITS.pool.root.1
[2026-03-01 00:56:02] -rw-------. 1 boinc boinc   2979840 Mar  1 00:56 result.tar.gz
00:56:03 (9291): run_atlas exited; CPU time 66292.476674
00:56:03 (9291): called boinc_finish(0)

</stderr_txt>
]]>

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