Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:47:28 (3445138): wrapper (7.7.26015): starting
16:47:28 (3445138): wrapper: running run_atlas (--nthreads 12)
[2026-02-28 16:47:28] Arguments: --nthreads 12
[2026-02-28 16:47:28] Threads: 12
[2026-02-28 16:47:28] Checking for CVMFS
[2026-02-28 16:47:29] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-28 16:47:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-28 16:47:29] Running cvmfs_config stat atlas.cern.ch
[2026-02-28 16:47:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-28 16:47:31] 2.13.3.0 8602 165883 655224 156745 0 161 20106311 21042176 26112 16776704 0 582294246 99.383 896130432 33049 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-02-28 16:47:31] CVMFS is ok
[2026-02-28 16:47:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-28 16:47:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-28 16:47:31] Further information can be found at the LHC@home message board.
[2026-02-28 16:47:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-28 16:47:31] Checking for apptainer binary...
[2026-02-28 16:47:31] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-28 16:47:31] Running /usr/bin/apptainer --version
[2026-02-28 16:47:31] apptainer version 1.4.5-2.el9
[2026-02-28 16:47:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-28 16:47:33] c-16-16.aglt2.org
[2026-02-28 16:47:33] apptainer works
[2026-02-28 16:47:33] Set ATHENA_PROC_NUMBER=12
[2026-02-28 16:47:33] Set ATHENA_CORE_NUMBER=12
[2026-02-28 16:47:34] Starting ATLAS job with PandaID=7033009563
[2026-02-28 16:47:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-02 00:01:41]  *** The last 200 lines of the pilot log: ***
[2026-03-02 00:01:42] 2026-03-02 04:34:43,042 | INFO     | sum of deviations: -623539534889.5298
[2026-03-02 00:01:42] 2026-03-02 04:34:43,043 | INFO     | mean x: 1772370741.5510204
[2026-03-02 00:01:42] 2026-03-02 04:34:43,043 | INFO     | mean y: 2717317.0165471593
[2026-03-02 00:01:42] 2026-03-02 04:34:43,043 | INFO     | intersect: 600774106.8403248
[2026-03-02 00:01:42] 2026-03-02 04:34:43,046 | INFO     | chi2: 10.777228757503266
[2026-03-02 00:01:42] 2026-03-02 04:34:43,048 | INFO     | sum of square deviations: 1832644359576.6887
[2026-03-02 00:01:42] 2026-03-02 04:34:43,933 | INFO     | sum of deviations: 10066241739.66977
[2026-03-02 00:01:42] 2026-03-02 04:34:43,933 | INFO     | mean x: 1772370589.0542035
[2026-03-02 00:01:42] 2026-03-02 04:34:43,934 | INFO     | mean y: 2723654.7278761063
[2026-03-02 00:01:42] 2026-03-02 04:34:43,934 | INFO     | intersect: -7011518.770718858
[2026-03-02 00:01:42] 2026-03-02 04:34:44,086 | INFO     | chi2: 7.133047895914645
[2026-03-02 00:01:42] 2026-03-02 04:34:44,087 | INFO     | current chi2=7.133047895914645 (change=33.81370984680536 %)
[2026-03-02 00:01:42] 2026-03-02 04:34:44,089 | INFO     | sum of square deviations: 1817482923024.5781
[2026-03-02 00:01:42] 2026-03-02 04:34:45,940 | INFO     | monitor loop #4028: job 0:7033009563 is in state 'finished'
[2026-03-02 00:01:42] 2026-03-02 04:34:45,940 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-02 00:01:42] 2026-03-02 04:34:48,593 | INFO     | sum of deviations: 645222902253.8499
[2026-03-02 00:01:42] 2026-03-02 04:34:48,593 | INFO     | mean x: 1772370436.5585136
[2026-03-02 00:01:42] 2026-03-02 04:34:48,646 | INFO     | mean y: 2730043.257348863
[2026-03-02 00:01:42] 2026-03-02 04:34:48,646 | INFO     | intersect: -626477517.6269754
[2026-03-02 00:01:42] 2026-03-02 04:34:48,648 | INFO     | chi2: 3.5246606506698708
[2026-03-02 00:01:42] 2026-03-02 04:34:48,649 | INFO     | current chi2=3.5246606506698708 (change=50.5868921378115 %)
[2026-03-02 00:01:42] 2026-03-02 04:34:48,671 | INFO     | sum of square deviations: 1802405019293.269
[2026-03-02 00:01:42] 2026-03-02 04:34:49,273 | INFO     | monitor loop #4029: job 0:7033009563 is in state 'finished'
[2026-03-02 00:01:42] 2026-03-02 04:34:49,273 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-02 00:01:42] 2026-03-02 04:34:50,430 | INFO     | sum of deviations: 781752826945.2467
[2026-03-02 00:01:42] 2026-03-02 04:34:50,430 | INFO     | mean x: 1772370284.0611792
[2026-03-02 00:01:42] 2026-03-02 04:34:50,430 | INFO     | mean y: 2731421.0250278087
[2026-03-02 00:01:42] 2026-03-02 04:34:50,430 | INFO     | intersect: -765994511.8964524
[2026-03-02 00:01:42] 2026-03-02 04:34:50,433 | INFO     | chi2: 2.6807587891112883
[2026-03-02 00:01:42] 2026-03-02 04:34:50,433 | INFO     | current chi2=2.6807587891112883 (change=23.94278329739905 %)
[2026-03-02 00:01:42] 2026-03-02 04:34:50,433 | INFO     | right removable region: 1797
[2026-03-02 00:01:42] 2026-03-02 04:34:50,517 | INFO     | sum of square deviations: 1832642865316.4678
[2026-03-02 00:01:42] 2026-03-02 04:34:52,091 | INFO     | monitor loop #4030: job 0:7033009563 is in state 'finished'
[2026-03-02 00:01:42] 2026-03-02 04:34:52,091 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-02 00:01:42] 2026-03-02 04:34:52,673 | INFO     | sum of deviations: -1115535043379.2285
[2026-03-02 00:01:42] 2026-03-02 04:34:52,673 | INFO     | mean x: 1772370894.0553098
[2026-03-02 00:01:42] 2026-03-02 04:34:52,674 | INFO     | mean y: 2722235.362278761
[2026-03-02 00:01:42] 2026-03-02 04:34:52,674 | INFO     | intersect: 1081569554.5002885
[2026-03-02 00:01:42] 2026-03-02 04:34:52,709 | INFO     | chi2: 8.39153860163754
[2026-03-02 00:01:42] 2026-03-02 04:34:52,710 | INFO     | current chi2=8.39153860163754 (change=22.13639711604686 %)
[2026-03-02 00:01:42] 2026-03-02 04:34:52,710 | INFO     | left removable region: 10
[2026-03-02 00:01:42] 2026-03-02 04:34:52,712 | INFO     | sum of square deviations: 1769524977116.0732
[2026-03-02 00:01:42] 2026-03-02 04:34:54,528 | INFO     | PID=3450574 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-02 00:01:42] 2026-03-02 04:34:54,528 | INFO     | .. there are 45 such processes running
[2026-03-02 00:01:42] 2026-03-02 04:34:55,023 | INFO     | monitor loop #4031: job 0:7033009563 is in state 'finished'
[2026-03-02 00:01:42] 2026-03-02 04:34:55,023 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-02 00:01:42] 2026-03-02 04:34:55,058 | INFO     | sum of deviations: 182770147321.1575
[2026-03-02 00:01:42] 2026-03-02 04:34:55,058 | INFO     | mean x: 1772370558.5696697
[2026-03-02 00:01:42] 2026-03-02 04:34:55,058 | INFO     | mean y: 2737514.3682148852
[2026-03-02 00:01:42] 2026-03-02 04:34:55,058 | INFO     | intersect: -180326546.48805183
[2026-03-02 00:01:42] 2026-03-02 04:34:55,116 | INFO     | chi2: 0.14468761811567343
[2026-03-02 00:01:42] 2026-03-02 04:34:55,117 | INFO     | current memory leak: 0.10 B/s (using 1787 data points, chi2=0.14)
[2026-03-02 00:01:42] 2026-03-02 04:34:55,118 | INFO     | could have reported an average CPU frequency of 2900 MHz (64 samples)
[2026-03-02 00:01:42] 2026-03-02 04:34:55,118 | INFO     | ..............................
[2026-03-02 00:01:42] 2026-03-02 04:34:55,118 | INFO     | . Timing measurements:
[2026-03-02 00:01:42] 2026-03-02 04:34:55,119 | INFO     | . get job = 0 s
[2026-03-02 00:01:42] 2026-03-02 04:34:55,119 | INFO     | . initial setup = 42 s
[2026-03-02 00:01:42] 2026-03-02 04:34:55,119 | INFO     | . payload setup = 41 s
[2026-03-02 00:01:42] 2026-03-02 04:34:55,119 | INFO     | . stage-in = 0 s
[2026-03-02 00:01:42] 2026-03-02 04:34:55,119 | INFO     | . payload execution = 110581 s
[2026-03-02 00:01:42] 2026-03-02 04:34:55,119 | INFO     | . stage-out = 26 s
[2026-03-02 00:01:42] 2026-03-02 04:34:55,122 | INFO     | . log creation = 7 s
[2026-03-02 00:01:42] 2026-03-02 04:34:55,123 | INFO     | ..............................
[2026-03-02 00:01:42] 2026-03-02 04:34:55,544 | INFO     | time since job start (110715s) is within the limit (349056.0s)
[2026-03-02 00:01:42] 2026-03-02 04:34:56,732 | INFO     | 
[2026-03-02 00:01:42] 2026-03-02 04:34:56,732 | INFO     | job summary report
[2026-03-02 00:01:42] 2026-03-02 04:34:56,732 | INFO     | --------------------------------------------------
[2026-03-02 00:01:42] 2026-03-02 04:34:56,732 | INFO     | PanDA job id: 7033009563
[2026-03-02 00:01:42] 2026-03-02 04:34:56,732 | INFO     | task id: 48838536
[2026-03-02 00:01:42] 2026-03-02 04:34:56,732 | INFO     | errors: (none)
[2026-03-02 00:01:42] 2026-03-02 04:34:56,733 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-02 00:01:42] 2026-03-02 04:34:56,733 | INFO     | pilot state: finished 
[2026-03-02 00:01:42] 2026-03-02 04:34:56,733 | INFO     | transexitcode: 0
[2026-03-02 00:01:42] 2026-03-02 04:34:56,733 | INFO     | exeerrorcode: 0
[2026-03-02 00:01:42] 2026-03-02 04:34:56,733 | INFO     | exeerrordiag: 
[2026-03-02 00:01:42] 2026-03-02 04:34:56,733 | INFO     | exitcode: 0
[2026-03-02 00:01:42] 2026-03-02 04:34:56,733 | INFO     | exitmsg: OK
[2026-03-02 00:01:42] 2026-03-02 04:34:56,734 | INFO     | cpuconsumptiontime: 90851 s
[2026-03-02 00:01:42] 2026-03-02 04:34:56,734 | INFO     | nevents: 400
[2026-03-02 00:01:42] 2026-03-02 04:34:56,734 | INFO     | neventsw: 0
[2026-03-02 00:01:42] 2026-03-02 04:34:56,734 | INFO     | pid: 3459833
[2026-03-02 00:01:42] 2026-03-02 04:34:56,734 | INFO     | pgrp: 3459833
[2026-03-02 00:01:42] 2026-03-02 04:34:56,734 | INFO     | corecount: 12
[2026-03-02 00:01:42] 2026-03-02 04:34:56,734 | INFO     | event service: False
[2026-03-02 00:01:42] 2026-03-02 04:34:56,735 | INFO     | sizes: {0: 2281193, 1: 2281878, 2: 2281878, 3: 2282367, 4: 2282367, 15: 2282395, 110639: 2351044, 110642: 2351043, 110669: 2360097, 110674: 2360153, 110701: 236034
[2026-03-02 00:01:42] 2026-03-02 04:34:56,735 | INFO     | --------------------------------------------------
[2026-03-02 00:01:42] 2026-03-02 04:34:56,735 | INFO     | 
[2026-03-02 00:01:42] 2026-03-02 04:34:56,735 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-03-02 00:01:42] 2026-03-02 04:34:56,811 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-02 00:01:42] 2026-03-02 04:34:56,811 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-02 00:01:42] 2026-03-02 04:34:56,811 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-02 00:01:42] 2026-03-02 04:34:56,812 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-02 00:01:42] 2026-03-02 04:34:56,812 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-02 00:01:42] 2026-03-02 04:34:56,812 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-02 00:01:42] 2026-03-02 04:34:56,812 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-02 00:01:42] 2026-03-02 04:34:56,812 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-02 00:01:42] 2026-03-02 04:34:56,812 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-02 00:01:42] 2026-03-02 04:34:56,813 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-02 00:01:42] 2026-03-02 04:34:56,813 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-02 00:01:42] 2026-03-02 04:34:56,813 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-02 00:01:42] 2026-03-02 04:34:56,813 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-02 00:01:42] 2026-03-02 04:34:56,813 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-02 00:01:42] 2026-03-02 04:34:56,813 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-02 00:01:42] 2026-03-02 04:34:56,813 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-02 00:01:42] 2026-03-02 04:34:56,814 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-02 00:01:42] 2026-03-02 04:34:56,814 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-02 00:01:42] 2026-03-02 04:34:56,814 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-02 00:01:42] 2026-03-02 04:34:56,814 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-02 00:01:42] 2026-03-02 04:34:56,818 | INFO     | job 7033009563 has completed (purged errors)
[2026-03-02 00:01:42] 2026-03-02 04:34:56,819 | INFO     | overall cleanup function is called
[2026-03-02 00:01:42] 2026-03-02 04:34:57,830 | INFO     | --- collectZombieJob: --- 10, [3459833]
[2026-03-02 00:01:42] 2026-03-02 04:34:57,831 | INFO     | zombie collector waiting for pid 3459833
[2026-03-02 00:01:42] 2026-03-02 04:34:57,831 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-02 00:01:42] 2026-03-02 04:34:57,831 | INFO     | collected zombie processes
[2026-03-02 00:01:42] 2026-03-02 04:34:57,831 | INFO     | will attempt to kill all subprocesses of pid=3459833
[2026-03-02 00:01:42] 2026-03-02 04:35:10,020 | INFO     | process IDs to be killed: [3459833] (in reverse order)
[2026-03-02 00:01:42] 2026-03-02 04:35:12,830 | WARNING  | found no corresponding commands to process id(s)
[2026-03-02 00:01:42] 2026-03-02 04:35:12,830 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-02 00:01:42] 2026-03-02 04:35:13,141 | INFO     | did not find any defunct processes belonging to 3459833
[2026-03-02 00:01:42] 2026-03-02 04:35:13,241 | INFO     | did not find any defunct processes belonging to 3459833
[2026-03-02 00:01:42] 2026-03-02 04:35:13,241 | INFO     | ready for new job
[2026-03-02 00:01:42] 2026-03-02 04:35:13,241 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-02 00:01:42] 2026-03-02 04:35:13,286 | INFO     | **************************************
[2026-03-02 00:01:42] 2026-03-02 04:35:13,286 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-02 00:01:42] 2026-03-02 04:35:13,286 | INFO     | **************************************
[2026-03-02 00:01:42] 2026-03-02 04:35:13,286 | INFO     | 
[2026-03-02 00:01:42] 2026-03-02 04:35:13,288 | INFO     | architecture information:
[2026-03-02 00:01:42] 2026-03-02 04:35:13,327 | INFO     | executing command: cat /etc/os-release
[2026-03-02 00:01:42] 2026-03-02 04:35:13,522 | INFO     | cat /etc/os-release:
[2026-03-02 00:01:42] NAME="CentOS Linux"
[2026-03-02 00:01:42] VERSION="7 (Core)"
[2026-03-02 00:01:42] ID="centos"
[2026-03-02 00:01:42] ID_LIKE="rhel fedora"
[2026-03-02 00:01:42] VERSION_ID="7"
[2026-03-02 00:01:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-02 00:01:42] ANSI_COLOR="0;31"
[2026-03-02 00:01:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-02 00:01:42] HOME_URL="https://www.centos.org/"
[2026-03-02 00:01:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-02 00:01:42] 
[2026-03-02 00:01:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-02 00:01:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-02 00:01:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-02 00:01:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-02 00:01:42] 
[2026-03-02 00:01:42] 2026-03-02 04:35:13,522 | INFO     | **************************************
[2026-03-02 00:01:42] 2026-03-02 04:35:14,026 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-03-02 00:01:42] 2026-03-02 04:35:14,129 | INFO     | sufficient remaining disk space (51036291072 B)
[2026-03-02 00:01:42] 2026-03-02 04:35:14,129 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-02 00:01:42] 2026-03-02 04:35:14,134 | INFO     | current server update state: UPDATING_FINAL
[2026-03-02 00:01:42] 2026-03-02 04:35:14,134 | INFO     | update_server=False
[2026-03-02 00:01:42] 2026-03-02 04:35:14,134 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-02 00:01:42] 2026-03-02 04:35:14,339 | INFO     | all data control threads have been joined
[2026-03-02 00:01:42] 2026-03-02 04:35:14,413 | INFO     | all job control threads have been joined
[2026-03-02 00:01:42] 2026-03-02 04:35:14,421 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-02 00:01:42] 2026-03-02 04:35:14,426 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-02 00:01:42] 2026-03-02 04:35:14,427 | INFO     | aborting loop
[2026-03-02 00:01:42] 2026-03-02 04:35:14,509 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-02 00:01:42] 2026-03-02 04:35:14,599 | INFO     | all payload control threads have been joined
[2026-03-02 00:01:42] 2026-03-02 04:35:15,148 | INFO     | [job] retrieve thread has finished
[2026-03-02 00:01:42] 2026-03-02 04:35:15,277 | INFO     | [job] create_data_payload thread has finished
[2026-03-02 00:01:42] 2026-03-02 04:35:15,375 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-02 00:01:42] 2026-03-02 04:35:15,420 | INFO     | [data] control thread has finished
[2026-03-02 00:01:42] 2026-03-02 04:35:15,424 | INFO     | [job] control thread has finished
[2026-03-02 00:01:42] 2026-03-02 04:35:15,427 | INFO     | [job] queue monitor thread has finished
[2026-03-02 00:01:42] 2026-03-02 04:35:15,479 | INFO     | [job] job monitor thread has finished
[2026-03-02 00:01:42] 2026-03-02 04:35:15,537 | INFO     | [payload] failed_post thread has finished
[2026-03-02 00:01:42] 2026-03-02 04:35:15,559 | INFO     | [job] validate thread has finished
[2026-03-02 00:01:42] 2026-03-02 04:35:15,559 | INFO     | [payload] validate_post thread has finished
[2026-03-02 00:01:42] 2026-03-02 04:35:15,606 | INFO     | [payload] control thread has finished
[2026-03-02 00:01:42] 2026-03-02 04:35:15,757 | INFO     | [payload] validate_pre thread has finished
[2026-03-02 00:01:42] 2026-03-02 04:35:15,767 | INFO     | [payload] execute_payloads thread has finished
[2026-03-02 00:01:42] 2026-03-02 04:35:15,770 | INFO     | [data] copytool_in thread has finished
[2026-03-02 00:01:42] 2026-03-02 04:35:15,784 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-02 00:01:42] 2026-03-02 04:35:15,796 | INFO     | [monitor] cgroup control has ended
[2026-03-02 00:01:42] 2026-03-02 04:35:16,515 | INFO     | [data] copytool_out thread has finished
[2026-03-02 00:01:42] 2026-03-02 04:35:19,385 | INFO     | [data] queue_monitor thread has finished
[2026-03-02 00:01:42] 2026-03-02 04:35:19,525 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139997050197824)>', '<ExcThread(monitor, started 139996262557440)>']
[2026-03-02 00:01:42] 2026-03-02 04:35:24,552 | INFO     | all workflow threads have been joined
[2026-03-02 00:01:42] 2026-03-02 04:35:24,557 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-02 00:01:42] 2026-03-02 04:35:24,557 | INFO     | traces error code: 0
[2026-03-02 00:01:42] 2026-03-02 04:35:24,557 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-02 00:01:42] 2026-03-02 04:35:39,949 | INFO     | PID=3450574 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-02 00:01:42] 2026-03-02 04:35:39,949 | INFO     | .. there are 45 such processes running
[2026-03-02 00:01:42] 2026-03-02 04:35:39,950 | INFO     | found 0 job(s) in 20 queues
[2026-03-02 00:01:42] 2026-03-02 04:35:39,950 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-02 00:01:42] 2026-03-02 04:35:39,950 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-02 00:01:42] 2026-03-02 04:35:39,950 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-02 00:01:42] 2026-03-02 04:35:39,951 | CRITICAL | thread 'MainThread' is not alive
[2026-03-02 00:01:42] 2026-03-02 04:35:39,951 | INFO     | [monitor] control thread has ended
[2026-03-02 00:01:42] 2026-03-02 04:35:44,738 [wrapper] ==== pilot stdout END ====
[2026-03-02 00:01:42] 2026-03-02 04:35:44,756 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-02 00:01:42] 2026-03-02 04:35:44,807 [wrapper] pilotpid: 3450574
[2026-03-02 00:01:42] 2026-03-02 04:35:44,842 [wrapper] Pilot exit status: 0
[2026-03-02 00:01:42] 2026-03-02 04:35:45,015 [wrapper] pandaids: 7033009563
[2026-03-02 00:01:42] 2026-03-02 04:35:45,285 [wrapper] cleanup supervisor_pilot  724570 3450575
[2026-03-02 00:01:42] 2026-03-02 04:35:45,289 [wrapper] Test setup, not cleaning
[2026-03-02 00:01:42] 2026-03-02 04:35:45,293 [wrapper] apfmon messages muted
[2026-03-02 00:01:42] 2026-03-02 04:35:45,314 [wrapper] ==== wrapper stdout END ====
[2026-03-02 00:01:42] 2026-03-02 04:35:45,331 [wrapper] ==== wrapper stderr END ====
[2026-03-02 00:01:42]  *** Error codes and diagnostics ***
[2026-03-02 00:01:42]     "exeErrorCode": 0,
[2026-03-02 00:01:42]     "exeErrorDiag": "",
[2026-03-02 00:01:42]     "pilotErrorCode": 0,
[2026-03-02 00:01:42]     "pilotErrorDiag": "",
[2026-03-02 00:01:42]  *** Listing of results directory ***
[2026-03-02 00:01:42] total 497252
[2026-03-02 00:01:42] -rw-r--r--. 1 boincer umatlas    584627 Feb 28 07:40 pilot3.tar.gz
[2026-03-02 00:01:42] -rwx------. 1 boincer umatlas     36322 Feb 28 07:42 runpilot2-wrapper.sh
[2026-03-02 00:01:42] -rw-r--r--. 1 boincer umatlas      5111 Feb 28 07:43 queuedata.json
[2026-03-02 00:01:42] -rw-r--r--. 1 boincer umatlas       100 Feb 28 16:47 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-02 00:01:42] -rwxr-xr-x. 1 boincer umatlas      7986 Feb 28 16:47 run_atlas
[2026-03-02 00:01:42] -rw-r--r--. 1 boincer umatlas       105 Feb 28 16:47 job.xml
[2026-03-02 00:01:42] -rw-r--r--. 2 boincer umatlas 271555137 Feb 28 16:47 EVNT.48343704._000060.pool.root.1
[2026-03-02 00:01:42] -rw-r--r--. 2 boincer umatlas     15845 Feb 28 16:47 start_atlas.sh
[2026-03-02 00:01:42] drwxrwx--x. 2 boincer umatlas      4096 Feb 28 16:47 shared
[2026-03-02 00:01:42] -rw-r--r--. 2 boincer umatlas    597968 Feb 28 16:47 input.tar.gz
[2026-03-02 00:01:42] -rw-r--r--. 1 boincer umatlas         0 Feb 28 16:47 boinc_lockfile
[2026-03-02 00:01:42] -rw-r--r--. 1 boincer umatlas      2573 Feb 28 16:47 pandaJob.out
[2026-03-02 00:01:42] -rw-------. 1 boincer umatlas        57 Feb 28 16:47 setup.sh.local
[2026-03-02 00:01:42] -rw-------. 1 boincer umatlas    998790 Feb 28 16:48 agis_schedconf.cvmfs.json
[2026-03-02 00:01:42] -rw-------. 1 boincer umatlas       432 Feb 28 16:49 workernode_map.json
[2026-03-02 00:01:42] drwx------. 5 boincer umatlas      4096 Feb 28 16:49 pilot3
[2026-03-02 00:01:42] -rw-------. 1 boincer umatlas 211185941 Mar  1 23:22 HITS.48838536._001477.pool.root.1
[2026-03-02 00:01:42] -rw-r--r--. 1 boincer umatlas       530 Mar  1 23:23 boinc_task_state.xml
[2026-03-02 00:01:42] -rw-------. 1 boincer umatlas      1039 Mar  1 23:33 memory_monitor_summary.json
[2026-03-02 00:01:42] -rw-------. 1 boincer umatlas   1513015 Mar  1 23:34 agis_ddmendpoints.agis.ALL.json
[2026-03-02 00:01:42] -rw-------. 1 boincer umatlas   1403275 Mar  1 23:34 log.48838536._001477.job.log.tgz.1
[2026-03-02 00:01:42] -rw-------. 1 boincer umatlas      6374 Mar  1 23:34 heartbeat.json
[2026-03-02 00:01:42] -rw-------. 1 boincer umatlas        95 Mar  1 23:35 pilot_heartbeat.json
[2026-03-02 00:01:42] -rw-------. 1 boincer umatlas       893 Mar  1 23:35 pilotlog.txt
[2026-03-02 00:01:42] -rw-------. 1 boincer umatlas   9855423 Mar  1 23:35 log.48838536._001477.job.log.1
[2026-03-02 00:01:42] -rw-------. 1 boincer umatlas       357 Mar  1 23:35 output.list
[2026-03-02 00:01:42] -rw-r--r--. 1 boincer umatlas       620 Mar  1 23:35 runtime_log
[2026-03-02 00:01:42] -rw-------. 1 boincer umatlas  11274240 Mar  1 23:35 result.tar.gz
[2026-03-02 00:01:42] -rw-r--r--. 1 boincer umatlas      9340 Mar  1 23:35 runtime_log.err
[2026-03-02 00:01:42] -rw-------. 1 boincer umatlas       659 Mar  1 23:35 ncYKDmbpYG9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmF46KDmxUkavm.diag
[2026-03-02 00:01:42] -rw-r--r--. 1 boincer umatlas      6524 Mar  2 00:01 init_data.xml
[2026-03-02 00:01:42] -rw-r--r--. 1 boincer umatlas      8192 Mar  2 00:01 boinc_mmap_file
[2026-03-02 00:01:42] -rw-r--r--. 1 boincer umatlas        28 Mar  2 00:01 wrapper_checkpoint.txt
[2026-03-02 00:01:42] -rw-r--r--. 1 boincer umatlas     21466 Mar  2 00:01 stderr.txt
[2026-03-02 00:01:42] HITS file was successfully produced:
[2026-03-02 00:01:42] -rw-------. 1 boincer umatlas 211185941 Mar  1 23:22 shared/HITS.pool.root.1
[2026-03-02 00:01:42]  *** Contents of shared directory: ***
[2026-03-02 00:01:42] total 483048
[2026-03-02 00:01:42] -rw-r--r--. 2 boincer umatlas 271555137 Feb 28 16:47 ATLAS.root_0
[2026-03-02 00:01:42] -rw-r--r--. 2 boincer umatlas     15845 Feb 28 16:47 start_atlas.sh
[2026-03-02 00:01:42] -rw-r--r--. 2 boincer umatlas    597968 Feb 28 16:47 input.tar.gz
[2026-03-02 00:01:42] -rw-------. 1 boincer umatlas 211185941 Mar  1 23:22 HITS.pool.root.1
[2026-03-02 00:01:42] -rw-------. 1 boincer umatlas  11274240 Mar  1 23:35 result.tar.gz
00:01:43 (3445138): run_atlas exited; CPU time 96280.330344
00:01:43 (3445138): called boinc_finish(0)

</stderr_txt>
]]>

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