Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:38:57 (485154): wrapper (7.7.26015): starting
13:38:57 (485154): wrapper: running run_atlas (--nthreads 4)
[2026-02-28 13:38:57] Arguments: --nthreads 4
[2026-02-28 13:38:57] Threads: 4
[2026-02-28 13:38:57] Checking for CVMFS
[2026-02-28 13:38:57] No cvmfs_config command found, will try listing directly
[2026-02-28 13:38:57] CVMFS is ok
[2026-02-28 13:38:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-28 13:38:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-28 13:38:57] Further information can be found at the LHC@home message board.
[2026-02-28 13:38:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-28 13:38:57] Checking for apptainer binary...
[2026-02-28 13:38:57] which: no apptainer in ((null))
[2026-02-28 13:38:57] apptainer is not installed, using version from CVMFS
[2026-02-28 13:38:57] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-28 13:38:57] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot52/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut19.grid.cesnet.cz
[2026-02-28 13:38:57] apptainer works
[2026-02-28 13:38:57] Set ATHENA_PROC_NUMBER=4
[2026-02-28 13:38:57] Set ATHENA_CORE_NUMBER=4
[2026-02-28 13:38:57] Starting ATLAS job with PandaID=7032742485
[2026-02-28 13:38:57] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot52/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-28 15:15:26]  *** The last 200 lines of the pilot log: ***
[2026-02-28 15:15:26]  lfn=log.48838462._002439.job.log.tgz.1
[2026-02-28 15:15:26]  mtime=0
[2026-02-28 15:15:26]  protocol_id=None
[2026-02-28 15:15:26]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-28 15:15:26]  replicas=None
[2026-02-28 15:15:26]  scope=mc23_13p6TeV
[2026-02-28 15:15:26]  status=None
[2026-02-28 15:15:26]  status_code=0
[2026-02-28 15:15:26]  storage_token=
[2026-02-28 15:15:26]  surl=/var/lib/boinc/var/slot52/slots/0/PanDA_Pilot-7032742485/log.48838462._002439.job.log.tgz.1
[2026-02-28 15:15:26]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ab/f3/log.48838462._002439.job.log.tgz.1
[2026-02-28 15:15:26]  workdir=None
[2026-02-28 15:15:26] ]
[2026-02-28 15:15:26] 2026-02-28 14:14:20,426 | INFO     | transferring file log.48838462._002439.job.log.tgz.1 from /var/lib/boinc/var/slot52/slots/0/PanDA_Pilot-7032742485/log.48838462._002439.job.log.tgz.1 to /var/lib/b
[2026-02-28 15:15:26] 2026-02-28 14:14:20,427 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot52/slots/0/PanDA_Pilot-7032742485/log.48838462._002439.job.log.tgz.1 /var/lib/boinc/var/slot52/slots/0/lo
[2026-02-28 15:15:26] 2026-02-28 14:14:20,442 | INFO     | adding to output.list: log.48838462._002439.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ab/f3/log.48838462._002439.job.log.tg
[2026-02-28 15:15:26] 2026-02-28 14:14:20,442 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-28 15:15:26] 2026-02-28 14:14:20,442 | INFO     | summary of transferred files:
[2026-02-28 15:15:26] 2026-02-28 14:14:20,442 | INFO     |  -- lfn=log.48838462._002439.job.log.tgz.1, status_code=0, status=transferred
[2026-02-28 15:15:26] 2026-02-28 14:14:20,443 | INFO     | stage-out finished correctly
[2026-02-28 15:15:26] 2026-02-28 14:14:20,888 | INFO     | PID=642710 has CPU usage=12.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-28 15:15:26] 2026-02-28 14:14:20,889 | INFO     | .. there are 54 such processes running
[2026-02-28 15:15:26] 2026-02-28 14:14:21,889 | INFO     | time since job start (5710s) is within the limit (349056.0s)
[2026-02-28 15:15:26] 2026-02-28 14:14:22,117 | INFO     | monitor loop #414: job 0:7032742485 is in state 'finished'
[2026-02-28 15:15:26] 2026-02-28 14:14:22,118 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-28 15:15:26] 2026-02-28 14:14:22,496 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-28 15:15:26] 2026-02-28 14:14:23,894 | INFO     | time since job start (5712s) is within the limit (349056.0s)
[2026-02-28 15:15:26] 2026-02-28 14:14:24,554 | INFO     | job 7032742485 has state=finished
[2026-02-28 15:15:26] 2026-02-28 14:14:24,554 | INFO     | preparing for final server update for job 7032742485 in state='finished'
[2026-02-28 15:15:26] 2026-02-28 14:14:24,554 | INFO     | reading metadata from: /var/lib/boinc/var/slot52/slots/0/PanDA_Pilot-7032742485/jobReport.json
[2026-02-28 15:15:26] 2026-02-28 14:14:24,556 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot52/slots/0/workernode_map.json
[2026-02-28 15:15:26] 2026-02-28 14:14:24,556 | INFO     | this job has now completed (state=finished)
[2026-02-28 15:15:26] 2026-02-28 14:14:24,556 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-28 15:15:26] 2026-02-28 14:14:24,556 | INFO     | log transfer has been attempted: DONE
[2026-02-28 15:15:26] 2026-02-28 14:14:24,556 | INFO     | job 7032742485 has finished - writing final server update
[2026-02-28 15:15:26] 2026-02-28 14:14:24,557 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_200413/.job.ad'
[2026-02-28 15:15:26] 2026-02-28 14:14:24,557 | INFO     | total number of processed events: 400 (read)
[2026-02-28 15:15:26] 2026-02-28 14:14:24,574 | INFO     | using path: /var/lib/boinc/var/slot52/slots/0/PanDA_Pilot-7032742485/memory_monitor_summary.json (trf name=prmon)
[2026-02-28 15:15:26] 2026-02-28 14:14:24,574 | INFO     | extracted standard info from prmon json
[2026-02-28 15:15:26] 2026-02-28 14:14:24,574 | INFO     | extracted standard memory fields from prmon json
[2026-02-28 15:15:26] 2026-02-28 14:14:24,574 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-28 15:15:26] 2026-02-28 14:14:24,574 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-28 15:15:26] 2026-02-28 14:14:24,574 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-28 15:15:26] 2026-02-28 14:14:24,576 | INFO     | fitting pss+swap vs Time
[2026-02-28 15:15:26] 2026-02-28 14:14:24,576 | INFO     | sum of square deviations: 204163828.0
[2026-02-28 15:15:26] 2026-02-28 14:14:24,576 | INFO     | sum of deviations: 187038017.00000012
[2026-02-28 15:15:26] 2026-02-28 14:14:24,576 | INFO     | mean x: 1772285298.0
[2026-02-28 15:15:26] 2026-02-28 14:14:24,576 | INFO     | mean y: 2346410.2413793104
[2026-02-28 15:15:26] 2026-02-28 14:14:24,576 | INFO     | intersect: -1621274830.3251636
[2026-02-28 15:15:26] 2026-02-28 14:14:24,576 | INFO     | chi2: 0.00038867585652143586
[2026-02-28 15:15:26] 2026-02-28 14:14:24,576 | INFO     | current memory leak: 0.92 B/s (using 87 data points, chi2=0.00)
[2026-02-28 15:15:26] 2026-02-28 14:14:24,577 | INFO     | could have reported an average CPU frequency of 4408 MHz (7 samples)
[2026-02-28 15:15:26] 2026-02-28 14:14:24,577 | INFO     | ..............................
[2026-02-28 15:15:26] 2026-02-28 14:14:24,577 | INFO     | . Timing measurements:
[2026-02-28 15:15:26] 2026-02-28 14:14:24,577 | INFO     | . get job = 0 s
[2026-02-28 15:15:26] 2026-02-28 14:14:24,577 | INFO     | . initial setup = 5 s
[2026-02-28 15:15:26] 2026-02-28 14:14:24,577 | INFO     | . payload setup = 4 s
[2026-02-28 15:15:26] 2026-02-28 14:14:24,577 | INFO     | . stage-in = 0 s
[2026-02-28 15:15:26] 2026-02-28 14:14:24,577 | INFO     | . payload execution = 5689 s
[2026-02-28 15:15:26] 2026-02-28 14:14:24,577 | INFO     | . stage-out = 0 s
[2026-02-28 15:15:26] 2026-02-28 14:14:24,577 | INFO     | . log creation = 0 s
[2026-02-28 15:15:26] 2026-02-28 14:14:24,577 | INFO     | ..............................
[2026-02-28 15:15:26] 2026-02-28 14:14:24,949 | INFO     | 
[2026-02-28 15:15:26] 2026-02-28 14:14:24,949 | INFO     | job summary report
[2026-02-28 15:15:26] 2026-02-28 14:14:24,949 | INFO     | --------------------------------------------------
[2026-02-28 15:15:26] 2026-02-28 14:14:24,949 | INFO     | PanDA job id: 7032742485
[2026-02-28 15:15:26] 2026-02-28 14:14:24,949 | INFO     | task id: 48838462
[2026-02-28 15:15:26] 2026-02-28 14:14:24,949 | INFO     | errors: (none)
[2026-02-28 15:15:26] 2026-02-28 14:14:24,949 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-28 15:15:26] 2026-02-28 14:14:24,949 | INFO     | pilot state: finished 
[2026-02-28 15:15:26] 2026-02-28 14:14:24,949 | INFO     | transexitcode: 0
[2026-02-28 15:15:26] 2026-02-28 14:14:24,949 | INFO     | exeerrorcode: 0
[2026-02-28 15:15:26] 2026-02-28 14:14:24,949 | INFO     | exeerrordiag: 
[2026-02-28 15:15:26] 2026-02-28 14:14:24,949 | INFO     | exitcode: 0
[2026-02-28 15:15:26] 2026-02-28 14:14:24,950 | INFO     | exitmsg: OK
[2026-02-28 15:15:26] 2026-02-28 14:14:24,950 | INFO     | cpuconsumptiontime: 21993 s
[2026-02-28 15:15:26] 2026-02-28 14:14:24,950 | INFO     | nevents: 400
[2026-02-28 15:15:26] 2026-02-28 14:14:24,950 | INFO     | neventsw: 0
[2026-02-28 15:15:26] 2026-02-28 14:14:24,950 | INFO     | pid: 1104746
[2026-02-28 15:15:26] 2026-02-28 14:14:24,950 | INFO     | pgrp: 1104746
[2026-02-28 15:15:26] 2026-02-28 14:14:24,950 | INFO     | corecount: 4
[2026-02-28 15:15:26] 2026-02-28 14:14:24,950 | INFO     | event service: False
[2026-02-28 15:15:26] 2026-02-28 14:14:24,950 | INFO     | sizes: {0: 2282283, 11: 2282283, 5697: 2308983, 5698: 2318003, 5700: 2318059, 5702: 2318253}
[2026-02-28 15:15:26] 2026-02-28 14:14:24,950 | INFO     | --------------------------------------------------
[2026-02-28 15:15:26] 2026-02-28 14:14:24,950 | INFO     | 
[2026-02-28 15:15:26] 2026-02-28 14:14:24,950 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot52/slots/0
[2026-02-28 15:15:26] 2026-02-28 14:14:24,967 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-28 15:15:26] 2026-02-28 14:14:24,967 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-28 15:15:26] 2026-02-28 14:14:24,968 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-28 15:15:26] 2026-02-28 14:14:24,968 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-28 15:15:26] 2026-02-28 14:14:24,968 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-28 15:15:26] 2026-02-28 14:14:24,968 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-28 15:15:26] 2026-02-28 14:14:24,968 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-28 15:15:26] 2026-02-28 14:14:24,968 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-28 15:15:26] 2026-02-28 14:14:24,968 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-28 15:15:26] 2026-02-28 14:14:24,968 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-28 15:15:26] 2026-02-28 14:14:24,968 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-28 15:15:26] 2026-02-28 14:14:24,968 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-28 15:15:26] 2026-02-28 14:14:24,968 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-28 15:15:26] 2026-02-28 14:14:24,968 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-28 15:15:26] 2026-02-28 14:14:24,968 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-28 15:15:26] 2026-02-28 14:14:24,968 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-28 15:15:26] 2026-02-28 14:14:24,968 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-28 15:15:26] 2026-02-28 14:14:24,968 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-28 15:15:26] 2026-02-28 14:14:24,968 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-28 15:15:26] 2026-02-28 14:14:24,968 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-28 15:15:26] 2026-02-28 14:14:24,968 | INFO     | job 7032742485 has completed (purged errors)
[2026-02-28 15:15:26] 2026-02-28 14:14:24,968 | INFO     | overall cleanup function is called
[2026-02-28 15:15:26] 2026-02-28 14:14:25,975 | INFO     | --- collectZombieJob: --- 10, [1104746]
[2026-02-28 15:15:26] 2026-02-28 14:14:25,975 | INFO     | zombie collector waiting for pid 1104746
[2026-02-28 15:15:26] 2026-02-28 14:14:25,975 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-28 15:15:26] 2026-02-28 14:14:25,975 | INFO     | collected zombie processes
[2026-02-28 15:15:26] 2026-02-28 14:14:25,975 | INFO     | will attempt to kill all subprocesses of pid=1104746
[2026-02-28 15:15:26] 2026-02-28 14:14:26,367 | INFO     | process IDs to be killed: [1104746] (in reverse order)
[2026-02-28 15:15:26] 2026-02-28 14:14:26,523 | WARNING  | found no corresponding commands to process id(s)
[2026-02-28 15:15:26] 2026-02-28 14:14:26,523 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-28 15:15:26] 2026-02-28 14:14:26,549 | INFO     | did not find any defunct processes belonging to 1104746
[2026-02-28 15:15:26] 2026-02-28 14:14:26,573 | INFO     | did not find any defunct processes belonging to 1104746
[2026-02-28 15:15:26] 2026-02-28 14:14:26,574 | INFO     | ready for new job
[2026-02-28 15:15:26] 2026-02-28 14:14:26,574 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-28 15:15:26] 2026-02-28 14:14:26,575 | INFO     | **************************************
[2026-02-28 15:15:26] 2026-02-28 14:14:26,575 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-28 15:15:26] 2026-02-28 14:14:26,575 | INFO     | **************************************
[2026-02-28 15:15:26] 2026-02-28 14:14:26,575 | INFO     | 
[2026-02-28 15:15:26] 2026-02-28 14:14:26,580 | INFO     | architecture information:
[2026-02-28 15:15:26] 2026-02-28 14:14:26,580 | INFO     | executing command: cat /etc/os-release
[2026-02-28 15:15:26] 2026-02-28 14:14:26,594 | INFO     | cat /etc/os-release:
[2026-02-28 15:15:26] NAME="CentOS Linux"
[2026-02-28 15:15:26] VERSION="7 (Core)"
[2026-02-28 15:15:26] ID="centos"
[2026-02-28 15:15:26] ID_LIKE="rhel fedora"
[2026-02-28 15:15:26] VERSION_ID="7"
[2026-02-28 15:15:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-28 15:15:26] ANSI_COLOR="0;31"
[2026-02-28 15:15:26] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-28 15:15:26] HOME_URL="https://www.centos.org/"
[2026-02-28 15:15:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-28 15:15:26] 
[2026-02-28 15:15:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-28 15:15:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-28 15:15:26] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-28 15:15:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-28 15:15:26] 
[2026-02-28 15:15:26] 2026-02-28 14:14:26,594 | INFO     | **************************************
[2026-02-28 15:15:26] 2026-02-28 14:14:27,097 | INFO     | executing command: df -mP /var/lib/boinc/var/slot52/slots/0
[2026-02-28 15:15:26] 2026-02-28 14:14:27,114 | INFO     | sufficient remaining disk space (258856714240 B)
[2026-02-28 15:15:26] 2026-02-28 14:14:27,114 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-28 15:15:26] 2026-02-28 14:14:27,114 | INFO     | current server update state: UPDATING_FINAL
[2026-02-28 15:15:26] 2026-02-28 14:14:27,114 | INFO     | update_server=False
[2026-02-28 15:15:26] 2026-02-28 14:14:27,114 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-28 15:15:26] 2026-02-28 14:14:27,126 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-28 15:15:26] 2026-02-28 14:14:27,126 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-28 15:15:26] 2026-02-28 14:14:27,126 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-28 15:15:26] 2026-02-28 14:14:27,126 | INFO     | will abort loop
[2026-02-28 15:15:26] 2026-02-28 14:14:27,832 | INFO     | all payload control threads have been joined
[2026-02-28 15:15:26] 2026-02-28 14:14:28,119 | INFO     | [job] retrieve thread has finished
[2026-02-28 15:15:26] 2026-02-28 14:14:28,124 | INFO     | all data control threads have been joined
[2026-02-28 15:15:26] 2026-02-28 14:14:28,131 | INFO     | [job] job monitor thread has finished
[2026-02-28 15:15:26] 2026-02-28 14:14:28,505 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-28 15:15:26] 2026-02-28 14:14:28,551 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-28 15:15:26] 2026-02-28 14:14:28,576 | INFO     | [payload] validate_post thread has finished
[2026-02-28 15:15:26] 2026-02-28 14:14:28,680 | INFO     | all job control threads have been joined
[2026-02-28 15:15:26] 2026-02-28 14:14:28,767 | INFO     | [job] validate thread has finished
[2026-02-28 15:15:26] 2026-02-28 14:14:28,771 | INFO     | [job] create_data_payload thread has finished
[2026-02-28 15:15:26] 2026-02-28 14:14:28,838 | INFO     | [payload] control thread has finished
[2026-02-28 15:15:26] 2026-02-28 14:14:28,948 | INFO     | [payload] validate_pre thread has finished
[2026-02-28 15:15:26] 2026-02-28 14:14:29,130 | INFO     | [data] control thread has finished
[2026-02-28 15:15:26] 2026-02-28 14:14:29,265 | INFO     | [payload] failed_post thread has finished
[2026-02-28 15:15:26] 2026-02-28 14:14:29,497 | INFO     | [data] copytool_in thread has finished
[2026-02-28 15:15:26] 2026-02-28 14:14:29,525 | INFO     | [payload] execute_payloads thread has finished
[2026-02-28 15:15:26] 2026-02-28 14:14:29,633 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-28 15:15:26] 2026-02-28 14:14:29,685 | INFO     | [job] control thread has finished
[2026-02-28 15:15:26] 2026-02-28 14:14:30,510 | INFO     | [data] copytool_out thread has finished
[2026-02-28 15:15:26] 2026-02-28 14:14:30,636 | INFO     | [job] queue monitor thread has finished
[2026-02-28 15:15:26] 2026-02-28 14:14:32,556 | INFO     | [data] queue_monitor thread has finished
[2026-02-28 15:15:26] 2026-02-28 14:14:37,422 | INFO     | job.realtimelogging is not enabled
[2026-02-28 15:15:26] 2026-02-28 14:14:38,427 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-28 15:15:26] 2026-02-28 14:14:57,457 | INFO     | PID=642710 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-28 15:15:26] 2026-02-28 14:14:57,457 | INFO     | .. there are 52 such processes running
[2026-02-28 15:15:26] 2026-02-28 14:14:57,457 | INFO     | found 0 job(s) in 20 queues
[2026-02-28 15:15:26] 2026-02-28 14:14:57,457 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-28 15:15:26] 2026-02-28 14:14:57,457 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-28 15:15:26] 2026-02-28 14:15:20,026 | INFO     | [monitor] cgroup control has ended
[2026-02-28 15:15:26] 2026-02-28 14:15:20,942 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22512146204480)>', '<ExcThread(monitor, started 22511908828928)>']
[2026-02-28 15:15:26] 2026-02-28 14:15:21,567 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-28 15:15:26] 2026-02-28 14:15:21,567 | INFO     | [monitor] control thread has ended
[2026-02-28 15:15:26] 2026-02-28 14:15:25,962 | INFO     | all workflow threads have been joined
[2026-02-28 15:15:26] 2026-02-28 14:15:25,963 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-28 15:15:26] 2026-02-28 14:15:25,963 | INFO     | traces error code: 0
[2026-02-28 15:15:26] 2026-02-28 14:15:25,963 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-28 15:15:26] 2026-02-28 14:15:26,090 [wrapper] ==== pilot stdout END ====
[2026-02-28 15:15:26] 2026-02-28 14:15:26,091 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-28 15:15:26] 2026-02-28 14:15:26,094 [wrapper] pilotpid: 642710
[2026-02-28 15:15:26] 2026-02-28 14:15:26,096 [wrapper] Pilot exit status: 0
[2026-02-28 15:15:26] 2026-02-28 14:15:26,103 [wrapper] pandaids: 7032742485
[2026-02-28 15:15:26] 2026-02-28 14:15:26,209 [wrapper] cleanup supervisor_pilot 1571470 642719
[2026-02-28 15:15:26] 2026-02-28 14:15:26,211 [wrapper] Test setup, not cleaning
[2026-02-28 15:15:26] 2026-02-28 14:15:26,214 [wrapper] apfmon messages muted
[2026-02-28 15:15:26] 2026-02-28 14:15:26,216 [wrapper] ==== wrapper stdout END ====
[2026-02-28 15:15:26] 2026-02-28 14:15:26,218 [wrapper] ==== wrapper stderr END ====
[2026-02-28 15:15:26]  *** Error codes and diagnostics ***
[2026-02-28 15:15:26]     "exeErrorCode": 0,
[2026-02-28 15:15:26]     "exeErrorDiag": "",
[2026-02-28 15:15:26]     "pilotErrorCode": 0,
[2026-02-28 15:15:26]     "pilotErrorDiag": "",
[2026-02-28 15:15:26]  *** Listing of results directory ***
[2026-02-28 15:15:26] total 479064
[2026-02-28 15:15:26] -rw-r--r--. 1 boinc boinc      5111 Feb 28 09:11 queuedata.json
[2026-02-28 15:15:26] -rw-r--r--. 1 boinc boinc    584627 Feb 28 09:11 pilot3.tar.gz
[2026-02-28 15:15:26] -rwx------. 1 boinc boinc     36322 Feb 28 09:11 runpilot2-wrapper.sh
[2026-02-28 15:15:26] -rw-r--r--. 1 boinc boinc       100 Feb 28 13:38 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-28 15:15:26] -rwxr-xr-x. 1 boinc boinc      7986 Feb 28 13:38 run_atlas
[2026-02-28 15:15:26] -rw-r--r--. 1 boinc boinc       105 Feb 28 13:38 job.xml
[2026-02-28 15:15:26] -rw-r--r--. 2 boinc boinc    597958 Feb 28 13:38 input.tar.gz
[2026-02-28 15:15:26] -rw-r--r--. 1 boinc boinc      6699 Feb 28 13:38 init_data.xml
[2026-02-28 15:15:26] -rw-r--r--. 2 boinc boinc 279089810 Feb 28 13:38 EVNT.48220133._000096.pool.root.1
[2026-02-28 15:15:26] -rw-r--r--. 2 boinc boinc     15845 Feb 28 13:38 start_atlas.sh
[2026-02-28 15:15:26] drwxrwx--x. 2 boinc boinc      4096 Feb 28 13:38 shared
[2026-02-28 15:15:26] -rw-r--r--. 1 boinc boinc         0 Feb 28 13:38 boinc_lockfile
[2026-02-28 15:15:26] -rw-r--r--. 1 boinc boinc      2561 Feb 28 13:38 pandaJob.out
[2026-02-28 15:15:26] -rw-------. 1 boinc boinc    998790 Feb 28 13:39 agis_schedconf.cvmfs.json
[2026-02-28 15:15:26] -rw-------. 1 boinc boinc   1513015 Feb 28 13:39 agis_ddmendpoints.agis.ALL.json
[2026-02-28 15:15:26] -rw-------. 1 boinc boinc       443 Feb 28 13:39 workernode_map.json
[2026-02-28 15:15:26] drwx------. 5 boinc boinc      4096 Feb 28 13:39 pilot3
[2026-02-28 15:15:26] -rw-------. 1 boinc boinc 205316730 Feb 28 15:13 HITS.48838462._002439.pool.root.1
[2026-02-28 15:15:26] -rw-r--r--. 1 boinc boinc       529 Feb 28 15:13 boinc_task_state.xml
[2026-02-28 15:15:26] -rw-------. 1 boinc boinc        95 Feb 28 15:14 pilot_heartbeat.json
[2026-02-28 15:15:26] -rw-------. 1 boinc boinc      1027 Feb 28 15:14 memory_monitor_summary.json
[2026-02-28 15:15:26] -rw-------. 1 boinc boinc    283036 Feb 28 15:14 log.48838462._002439.job.log.tgz.1
[2026-02-28 15:15:26] -rw-------. 1 boinc boinc      6342 Feb 28 15:14 heartbeat.json
[2026-02-28 15:15:26] -rw-r--r--. 1 boinc boinc      8192 Feb 28 15:15 boinc_mmap_file
[2026-02-28 15:15:26] -rw-r--r--. 1 boinc boinc        27 Feb 28 15:15 wrapper_checkpoint.txt
[2026-02-28 15:15:26] -rw-------. 1 boinc boinc      5087 Feb 28 15:15 pilotlog.txt
[2026-02-28 15:15:26] -rw-------. 1 boinc boinc    830058 Feb 28 15:15 log.48838462._002439.job.log.1
[2026-02-28 15:15:26] -rw-------. 1 boinc boinc       357 Feb 28 15:15 output.list
[2026-02-28 15:15:26] -rw-r--r--. 1 boinc boinc       620 Feb 28 15:15 runtime_log
[2026-02-28 15:15:26] -rw-------. 1 boinc boinc   1126400 Feb 28 15:15 result.tar.gz
[2026-02-28 15:15:26] -rw-r--r--. 1 boinc boinc      9204 Feb 28 15:15 runtime_log.err
[2026-02-28 15:15:26] -rw-------. 1 boinc boinc       662 Feb 28 15:15 qevKDmSbUG9n9Rq4apOajLDm4fhM0noT9bVooX4SDmru4KDmt7tbOn.diag
[2026-02-28 15:15:26] -rw-r--r--. 1 boinc boinc     21563 Feb 28 15:15 stderr.txt
[2026-02-28 15:15:26] HITS file was successfully produced:
[2026-02-28 15:15:26] -rw-------. 1 boinc boinc 205316730 Feb 28 15:13 shared/HITS.pool.root.1
[2026-02-28 15:15:26]  *** Contents of shared directory: ***
[2026-02-28 15:15:26] total 474768
[2026-02-28 15:15:26] -rw-r--r--. 2 boinc boinc    597958 Feb 28 13:38 input.tar.gz
[2026-02-28 15:15:26] -rw-r--r--. 2 boinc boinc 279089810 Feb 28 13:38 ATLAS.root_0
[2026-02-28 15:15:26] -rw-r--r--. 2 boinc boinc     15845 Feb 28 13:38 start_atlas.sh
[2026-02-28 15:15:26] -rw-------. 1 boinc boinc 205316730 Feb 28 15:13 HITS.pool.root.1
[2026-02-28 15:15:26] -rw-------. 1 boinc boinc   1126400 Feb 28 15:15 result.tar.gz
15:15:27 (485154): run_atlas exited; CPU time 22235.656745
15:15:27 (485154): called boinc_finish(0)

</stderr_txt>
]]>

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