Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:06:08 (916852): wrapper (7.7.26015): starting
01:06:08 (916852): wrapper: running run_atlas (--nthreads 4)
[2026-03-01 01:06:08] Arguments: --nthreads 4
[2026-03-01 01:06:08] Threads: 4
[2026-03-01 01:06:08] Checking for CVMFS
[2026-03-01 01:06:08] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-01 01:06:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-01 01:06:08] Running cvmfs_config stat atlas.cern.ch
[2026-03-01 01:06:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-01 01:06:08] 2.9.2.0 80714 4831 98696 156750 0 50 28143001 36864001 0 130560 0 2200639 99.983 192624 13137 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-01 01:06:08] CVMFS is ok
[2026-03-01 01:06:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-01 01:06:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-01 01:06:09] Further information can be found at the LHC@home message board.
[2026-03-01 01:06:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-01 01:06:09] Checking for apptainer binary...
[2026-03-01 01:06:09] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-01 01:06:09] Running /usr/bin/apptainer --version
[2026-03-01 01:06:09] apptainer version 1.4.1-1.1
[2026-03-01 01:06:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-01 01:06:09] thA325
[2026-03-01 01:06:09] apptainer works
[2026-03-01 01:06:09] Set ATHENA_PROC_NUMBER=4
[2026-03-01 01:06:09] Set ATHENA_CORE_NUMBER=4
[2026-03-01 01:06:09] Starting ATLAS job with PandaID=7030824201
[2026-03-01 01:06:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-01 03:38:38]  *** The last 200 lines of the pilot log: ***
[2026-03-01 03:38:38] 2026-03-01 02:37:51,387 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-01 03:38:38] 2026-03-01 02:37:51,387 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-01 03:38:38] 2026-03-01 02:37:51,387 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-01 03:38:38] 2026-03-01 02:37:51,387 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-01 03:38:38] 2026-03-01 02:37:51,387 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-01 03:38:38] 2026-03-01 02:37:51,387 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-01 03:38:38] 2026-03-01 02:37:51,387 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-01 03:38:38] 2026-03-01 02:37:51,387 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-01 03:38:38] 2026-03-01 02:37:51,387 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-01 03:38:38] 2026-03-01 02:37:51,387 | INFO     | job 7030824201 has completed (purged errors)
[2026-03-01 03:38:38] 2026-03-01 02:37:51,387 | INFO     | overall cleanup function is called
[2026-03-01 03:38:38] 2026-03-01 02:37:52,394 | INFO     | --- collectZombieJob: --- 10, [925471]
[2026-03-01 03:38:38] 2026-03-01 02:37:52,394 | INFO     | zombie collector waiting for pid 925471
[2026-03-01 03:38:38] 2026-03-01 02:37:52,395 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-01 03:38:38] 2026-03-01 02:37:52,395 | INFO     | collected zombie processes
[2026-03-01 03:38:38] 2026-03-01 02:37:52,395 | INFO     | will attempt to kill all subprocesses of pid=925471
[2026-03-01 03:38:38] 2026-03-01 02:37:52,445 | INFO     | process IDs to be killed: [925471] (in reverse order)
[2026-03-01 03:38:38] 2026-03-01 02:37:52,479 | WARNING  | found no corresponding commands to process id(s)
[2026-03-01 03:38:38] 2026-03-01 02:37:52,479 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-01 03:38:38] 2026-03-01 02:37:52,481 | INFO     | did not find any defunct processes belonging to 925471
[2026-03-01 03:38:38] 2026-03-01 02:37:52,482 | INFO     | did not find any defunct processes belonging to 925471
[2026-03-01 03:38:38] 2026-03-01 02:37:52,482 | INFO     | ready for new job
[2026-03-01 03:38:38] 2026-03-01 02:37:52,482 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-01 03:38:38] 2026-03-01 02:37:52,483 | INFO     | **************************************
[2026-03-01 03:38:38] 2026-03-01 02:37:52,483 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-01 03:38:38] 2026-03-01 02:37:52,483 | INFO     | **************************************
[2026-03-01 03:38:38] 2026-03-01 02:37:52,483 | INFO     | 
[2026-03-01 03:38:38] 2026-03-01 02:37:52,484 | INFO     | architecture information:
[2026-03-01 03:38:38] 2026-03-01 02:37:52,484 | INFO     | executing command: cat /etc/os-release
[2026-03-01 03:38:38] 2026-03-01 02:37:52,497 | INFO     | cat /etc/os-release:
[2026-03-01 03:38:38] NAME="CentOS Linux"
[2026-03-01 03:38:38] VERSION="7 (Core)"
[2026-03-01 03:38:38] ID="centos"
[2026-03-01 03:38:38] ID_LIKE="rhel fedora"
[2026-03-01 03:38:38] VERSION_ID="7"
[2026-03-01 03:38:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-01 03:38:38] ANSI_COLOR="0;31"
[2026-03-01 03:38:38] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-01 03:38:38] HOME_URL="https://www.centos.org/"
[2026-03-01 03:38:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-01 03:38:38] 
[2026-03-01 03:38:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-01 03:38:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-01 03:38:38] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-01 03:38:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-01 03:38:38] 
[2026-03-01 03:38:38] 2026-03-01 02:37:52,497 | INFO     | **************************************
[2026-03-01 03:38:38] 2026-03-01 02:37:53,000 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-01 03:38:38] 2026-03-01 02:37:53,018 | INFO     | sufficient remaining disk space (230729711616 B)
[2026-03-01 03:38:38] 2026-03-01 02:37:53,018 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-01 03:38:38] 2026-03-01 02:37:53,018 | INFO     | current server update state: UPDATING_FINAL
[2026-03-01 03:38:38] 2026-03-01 02:37:53,018 | INFO     | update_server=False
[2026-03-01 03:38:38] 2026-03-01 02:37:53,018 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-01 03:38:38] 2026-03-01 02:37:53,019 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-01 03:38:38] 2026-03-01 02:37:53,096 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-01 03:38:38] 2026-03-01 02:37:53,144 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-01 03:38:38] 2026-03-01 02:37:53,145 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-01 03:38:38] 2026-03-01 02:37:53,145 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-01 03:38:38] 2026-03-01 02:37:53,145 | INFO     | will abort loop
[2026-03-01 03:38:38] 2026-03-01 02:37:53,331 | INFO     | all payload control threads have been joined
[2026-03-01 03:38:38] 2026-03-01 02:37:53,381 | INFO     | all data control threads have been joined
[2026-03-01 03:38:38] 2026-03-01 02:37:54,024 | INFO     | [job] queue monitor thread has finished
[2026-03-01 03:38:38] 2026-03-01 02:37:54,024 | INFO     | [job] retrieve thread has finished
[2026-03-01 03:38:38] 2026-03-01 02:37:54,150 | INFO     | [job] job monitor thread has finished
[2026-03-01 03:38:38] 2026-03-01 02:37:54,194 | INFO     | [payload] execute_payloads thread has finished
[2026-03-01 03:38:38] 2026-03-01 02:37:54,225 | INFO     | all job control threads have been joined
[2026-03-01 03:38:38] 2026-03-01 02:37:54,337 | INFO     | [payload] control thread has finished
[2026-03-01 03:38:38] 2026-03-01 02:37:54,387 | INFO     | [data] control thread has finished
[2026-03-01 03:38:38] 2026-03-01 02:37:54,634 | INFO     | [payload] validate_post thread has finished
[2026-03-01 03:38:38] 2026-03-01 02:37:54,643 | INFO     | [job] validate thread has finished
[2026-03-01 03:38:38] 2026-03-01 02:37:54,756 | INFO     | [job] create_data_payload thread has finished
[2026-03-01 03:38:38] 2026-03-01 02:37:54,786 | INFO     | [payload] failed_post thread has finished
[2026-03-01 03:38:38] 2026-03-01 02:37:54,881 | INFO     | [payload] validate_pre thread has finished
[2026-03-01 03:38:38] 2026-03-01 02:37:54,986 | INFO     | [data] copytool_in thread has finished
[2026-03-01 03:38:38] 2026-03-01 02:37:55,102 | INFO     | [data] copytool_out thread has finished
[2026-03-01 03:38:38] 2026-03-01 02:37:55,230 | INFO     | [job] control thread has finished
[2026-03-01 03:38:38] 2026-03-01 02:37:56,120 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-01 03:38:38] 2026-03-01 02:38:00,128 | INFO     | [data] queue_monitor thread has finished
[2026-03-01 03:38:38] 2026-03-01 02:38:03,632 | INFO     | job.realtimelogging is not enabled
[2026-03-01 03:38:38] 2026-03-01 02:38:04,637 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-01 03:38:38] 2026-03-01 02:38:23,254 | INFO     | PID=920960 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-01 03:38:38] 2026-03-01 02:38:23,255 | INFO     | found 0 job(s) in 20 queues
[2026-03-01 03:38:38] 2026-03-01 02:38:23,255 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-01 03:38:38] 2026-03-01 02:38:23,255 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-01 03:38:38] 2026-03-01 02:38:32,204 | INFO     | [monitor] cgroup control has ended
[2026-03-01 03:38:38] 2026-03-01 02:38:33,191 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140515659482944)>', '<ExcThread(monitor, started 140514938574592)>']
[2026-03-01 03:38:38] 2026-03-01 02:38:33,308 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-01 03:38:38] 2026-03-01 02:38:33,308 | INFO     | [monitor] control thread has ended
[2026-03-01 03:38:38] 2026-03-01 02:38:38,212 | INFO     | all workflow threads have been joined
[2026-03-01 03:38:38] 2026-03-01 02:38:38,212 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-01 03:38:38] 2026-03-01 02:38:38,212 | INFO     | traces error code: 0
[2026-03-01 03:38:38] 2026-03-01 02:38:38,212 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-01 03:38:38] 2026-03-01 02:38:38,279 [wrapper] ==== pilot stdout END ====
[2026-03-01 03:38:38] 2026-03-01 02:38:38,283 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-01 03:38:38] 2026-03-01 02:38:38,287 [wrapper] pilotpid: 920960
[2026-03-01 03:38:38] 2026-03-01 02:38:38,291 [wrapper] Pilot exit status: 0
[2026-03-01 03:38:38] 2026-03-01 02:38:38,302 [wrapper] pandaids: 7030824201
[2026-03-01 03:38:38] 2026-03-01 02:38:38,324 [wrapper] cleanup supervisor_pilot  932452 920961
[2026-03-01 03:38:38] 2026-03-01 02:38:38,328 [wrapper] Test setup, not cleaning
[2026-03-01 03:38:38] 2026-03-01 02:38:38,332 [wrapper] apfmon messages muted
[2026-03-01 03:38:38] 2026-03-01 02:38:38,335 [wrapper] ==== wrapper stdout END ====
[2026-03-01 03:38:38] 2026-03-01 02:38:38,339 [wrapper] ==== wrapper stderr END ====
[2026-03-01 03:38:38]  *** Error codes and diagnostics ***
[2026-03-01 03:38:38]     "exeErrorCode": 0,
[2026-03-01 03:38:38]     "exeErrorDiag": "",
[2026-03-01 03:38:38]     "pilotErrorCode": 0,
[2026-03-01 03:38:38]     "pilotErrorDiag": "",
[2026-03-01 03:38:38]  *** Listing of results directory ***
[2026-03-01 03:38:38] total 367812
[2026-03-01 03:38:38] -rw-r--r-- 1 boinc boinc    584627 Feb 26 17:50 pilot3.tar.gz
[2026-03-01 03:38:38] -rwx------ 1 boinc boinc     36322 Feb 26 17:53 runpilot2-wrapper.sh
[2026-03-01 03:38:38] -rw-r--r-- 1 boinc boinc      5111 Feb 26 17:53 queuedata.json
[2026-03-01 03:38:38] -rw-r--r-- 1 boinc boinc       100 Mar  1 01:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-01 03:38:38] -rwxr-xr-x 1 boinc boinc      7986 Mar  1 01:06 run_atlas
[2026-03-01 03:38:38] -rw-r--r-- 1 boinc boinc       105 Mar  1 01:06 job.xml
[2026-03-01 03:38:38] -rw-r--r-- 2 boinc boinc 217228340 Mar  1 01:06 EVNT.48448159._000003.pool.root.1
[2026-03-01 03:38:38] -rw-r--r-- 2 boinc boinc    597974 Mar  1 01:06 input.tar.gz
[2026-03-01 03:38:38] -rw-r--r-- 2 boinc boinc     15845 Mar  1 01:06 start_atlas.sh
[2026-03-01 03:38:38] drwxrwx--x 2 boinc boinc      4096 Mar  1 01:06 shared
[2026-03-01 03:38:38] -rw-r--r-- 1 boinc boinc         0 Mar  1 01:06 boinc_setup_complete
[2026-03-01 03:38:38] -rw-r--r-- 1 boinc boinc      6369 Mar  1 01:06 init_data.xml
[2026-03-01 03:38:38] -rw-r--r-- 1 boinc boinc         0 Mar  1 01:06 boinc_lockfile
[2026-03-01 03:38:38] -rw-r--r-- 1 boinc boinc      2601 Mar  1 01:06 pandaJob.out
[2026-03-01 03:38:38] -rw------- 1 boinc boinc    998790 Mar  1 01:06 agis_schedconf.cvmfs.json
[2026-03-01 03:38:38] -rw------- 1 boinc boinc   1513015 Mar  1 01:06 agis_ddmendpoints.agis.ALL.json
[2026-03-01 03:38:38] -rw------- 1 boinc boinc       421 Mar  1 01:06 workernode_map.json
[2026-03-01 03:38:38] drwx------ 5 boinc boinc      4096 Mar  1 01:06 pilot3
[2026-03-01 03:38:38] -rw------- 1 boinc boinc 152257532 Mar  1 03:37 HITS.48842450._000063.pool.root.1
[2026-03-01 03:38:38] -rw-r--r-- 1 boinc boinc       529 Mar  1 03:37 boinc_task_state.xml
[2026-03-01 03:38:38] -rw------- 1 boinc boinc      1019 Mar  1 03:37 memory_monitor_summary.json
[2026-03-01 03:38:38] -rw------- 1 boinc boinc    327542 Mar  1 03:37 log.48842450._000063.job.log.tgz.1
[2026-03-01 03:38:38] -rw------- 1 boinc boinc      6285 Mar  1 03:37 heartbeat.json
[2026-03-01 03:38:38] -rw------- 1 boinc boinc        95 Mar  1 03:38 pilot_heartbeat.json
[2026-03-01 03:38:38] -rw-r--r-- 1 boinc boinc      8192 Mar  1 03:38 boinc_mmap_file
[2026-03-01 03:38:38] -rw-r--r-- 1 boinc boinc        27 Mar  1 03:38 wrapper_checkpoint.txt
[2026-03-01 03:38:38] -rw------- 1 boinc boinc      5005 Mar  1 03:38 pilotlog.txt
[2026-03-01 03:38:38] -rw------- 1 boinc boinc   1293263 Mar  1 03:38 log.48842450._000063.job.log.1
[2026-03-01 03:38:38] -rw------- 1 boinc boinc       357 Mar  1 03:38 output.list
[2026-03-01 03:38:38] -rw-r--r-- 1 boinc boinc       620 Mar  1 03:38 runtime_log
[2026-03-01 03:38:38] -rw------- 1 boinc boinc   1638400 Mar  1 03:38 result.tar.gz
[2026-03-01 03:38:38] -rw------- 1 boinc boinc       657 Mar  1 03:38 sIELDmGntF9n9Rq4apOajLDm4fhM0noT9bVooX4SDmOZ1KDmdrgzTo.diag
[2026-03-01 03:38:38] -rw-r--r-- 1 boinc boinc      8896 Mar  1 03:38 runtime_log.err
[2026-03-01 03:38:38] -rw-r--r-- 1 boinc boinc     12034 Mar  1 03:38 stderr.txt
[2026-03-01 03:38:38] HITS file was successfully produced:
[2026-03-01 03:38:38] -rw------- 1 boinc boinc 152257532 Mar  1 03:37 shared/HITS.pool.root.1
[2026-03-01 03:38:38]  *** Contents of shared directory: ***
[2026-03-01 03:38:38] total 363036
[2026-03-01 03:38:38] -rw-r--r-- 2 boinc boinc 217228340 Mar  1 01:06 ATLAS.root_0
[2026-03-01 03:38:38] -rw-r--r-- 2 boinc boinc    597974 Mar  1 01:06 input.tar.gz
[2026-03-01 03:38:38] -rw-r--r-- 2 boinc boinc     15845 Mar  1 01:06 start_atlas.sh
[2026-03-01 03:38:38] -rw------- 1 boinc boinc 152257532 Mar  1 03:37 HITS.pool.root.1
[2026-03-01 03:38:38] -rw------- 1 boinc boinc   1638400 Mar  1 03:38 result.tar.gz
03:38:40 (916852): run_atlas exited; CPU time 35200.790487
03:38:40 (916852): called boinc_finish(0)

</stderr_txt>
]]>

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