Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:48:58 (2191508): wrapper (7.7.26015): starting
19:48:58 (2191508): wrapper: running run_atlas (--nthreads 3)
[2026-02-28 19:48:58] Arguments: --nthreads 3
[2026-02-28 19:48:58] Threads: 3
[2026-02-28 19:48:58] Checking for CVMFS
[2026-02-28 19:48:59] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-28 19:48:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-28 19:48:59] Running cvmfs_config stat atlas.cern.ch
[2026-02-28 19:48:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-28 19:48:59] 2.9.2.0 1557025 4526 82108 156741 0 50 27167484 36864001 0 130560 0 1809976 99.979 179261 18027 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-28 19:48:59] CVMFS is ok
[2026-02-28 19:48:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-28 19:48:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-28 19:48:59] Further information can be found at the LHC@home message board.
[2026-02-28 19:48:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-28 19:48:59] Checking for apptainer binary...
[2026-02-28 19:48:59] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-28 19:48:59] Running /usr/bin/apptainer --version
[2026-02-28 19:48:59] apptainer version 1.4.1-1.1
[2026-02-28 19:48:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-28 19:48:59] thA327
[2026-02-28 19:48:59] apptainer works
[2026-02-28 19:48:59] Set ATHENA_PROC_NUMBER=3
[2026-02-28 19:48:59] Set ATHENA_CORE_NUMBER=3
[2026-02-28 19:48:59] Starting ATLAS job with PandaID=7032464933
[2026-02-28 19:48:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-28 20:54:20]  *** The last 200 lines of the pilot log: ***
[2026-02-28 20:54:20] 2026-02-28 19:53:41,428 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-28 20:54:20] 2026-02-28 19:53:41,428 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-28 20:54:20] 2026-02-28 19:53:41,428 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-28 20:54:20] 2026-02-28 19:53:41,428 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-28 20:54:20] 2026-02-28 19:53:41,428 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-28 20:54:20] 2026-02-28 19:53:41,428 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-28 20:54:20] 2026-02-28 19:53:41,428 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-28 20:54:20] 2026-02-28 19:53:41,428 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-28 20:54:20] 2026-02-28 19:53:41,428 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-28 20:54:20] 2026-02-28 19:53:41,428 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-28 20:54:20] 2026-02-28 19:53:41,428 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-28 20:54:20] 2026-02-28 19:53:41,428 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-28 20:54:20] 2026-02-28 19:53:41,428 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-28 20:54:20] 2026-02-28 19:53:41,428 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-28 20:54:20] 2026-02-28 19:53:41,428 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-28 20:54:20] 2026-02-28 19:53:41,428 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-28 20:54:20] 2026-02-28 19:53:41,428 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-28 20:54:20] 2026-02-28 19:53:41,429 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-28 20:54:20] 2026-02-28 19:53:41,429 | INFO     | job 7032464933 has completed (purged errors)
[2026-02-28 20:54:20] 2026-02-28 19:53:41,429 | INFO     | overall cleanup function is called
[2026-02-28 20:54:20] 2026-02-28 19:53:42,435 | INFO     | --- collectZombieJob: --- 10, [2199979]
[2026-02-28 20:54:20] 2026-02-28 19:53:42,435 | INFO     | zombie collector waiting for pid 2199979
[2026-02-28 20:54:20] 2026-02-28 19:53:42,435 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-28 20:54:20] 2026-02-28 19:53:42,435 | INFO     | collected zombie processes
[2026-02-28 20:54:20] 2026-02-28 19:53:42,436 | INFO     | will attempt to kill all subprocesses of pid=2199979
[2026-02-28 20:54:20] 2026-02-28 19:53:42,475 | INFO     | process IDs to be killed: [2199979] (in reverse order)
[2026-02-28 20:54:20] 2026-02-28 19:53:42,498 | WARNING  | found no corresponding commands to process id(s)
[2026-02-28 20:54:20] 2026-02-28 19:53:42,498 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-28 20:54:20] 2026-02-28 19:53:42,499 | INFO     | did not find any defunct processes belonging to 2199979
[2026-02-28 20:54:20] 2026-02-28 19:53:42,500 | INFO     | did not find any defunct processes belonging to 2199979
[2026-02-28 20:54:20] 2026-02-28 19:53:42,501 | INFO     | ready for new job
[2026-02-28 20:54:20] 2026-02-28 19:53:42,501 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-28 20:54:20] 2026-02-28 19:53:42,501 | INFO     | **************************************
[2026-02-28 20:54:20] 2026-02-28 19:53:42,501 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-28 20:54:20] 2026-02-28 19:53:42,501 | INFO     | **************************************
[2026-02-28 20:54:20] 2026-02-28 19:53:42,501 | INFO     | 
[2026-02-28 20:54:20] 2026-02-28 19:53:42,502 | INFO     | architecture information:
[2026-02-28 20:54:20] 2026-02-28 19:53:42,502 | INFO     | executing command: cat /etc/os-release
[2026-02-28 20:54:20] 2026-02-28 19:53:42,510 | INFO     | cat /etc/os-release:
[2026-02-28 20:54:20] NAME="CentOS Linux"
[2026-02-28 20:54:20] VERSION="7 (Core)"
[2026-02-28 20:54:20] ID="centos"
[2026-02-28 20:54:20] ID_LIKE="rhel fedora"
[2026-02-28 20:54:20] VERSION_ID="7"
[2026-02-28 20:54:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-28 20:54:20] ANSI_COLOR="0;31"
[2026-02-28 20:54:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-28 20:54:20] HOME_URL="https://www.centos.org/"
[2026-02-28 20:54:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-28 20:54:20] 
[2026-02-28 20:54:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-28 20:54:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-28 20:54:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-28 20:54:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-28 20:54:20] 
[2026-02-28 20:54:20] 2026-02-28 19:53:42,511 | INFO     | **************************************
[2026-02-28 20:54:20] 2026-02-28 19:53:43,014 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-28 20:54:20] 2026-02-28 19:53:43,026 | INFO     | sufficient remaining disk space (377418153984 B)
[2026-02-28 20:54:20] 2026-02-28 19:53:43,026 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-28 20:54:20] 2026-02-28 19:53:43,026 | INFO     | current server update state: UPDATING_FINAL
[2026-02-28 20:54:20] 2026-02-28 19:53:43,026 | INFO     | update_server=False
[2026-02-28 20:54:20] 2026-02-28 19:53:43,026 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-28 20:54:20] 2026-02-28 19:53:43,026 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-28 20:54:20] 2026-02-28 19:53:43,026 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-28 20:54:20] 2026-02-28 19:53:43,202 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-28 20:54:20] 2026-02-28 19:53:43,202 | INFO     | aborting loop
[2026-02-28 20:54:20] 2026-02-28 19:53:43,707 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-28 20:54:20] 2026-02-28 19:53:43,941 | INFO     | all payload control threads have been joined
[2026-02-28 20:54:20] 2026-02-28 19:53:44,032 | INFO     | [job] queue monitor thread has finished
[2026-02-28 20:54:20] 2026-02-28 19:53:44,032 | INFO     | [job] retrieve thread has finished
[2026-02-28 20:54:20] 2026-02-28 19:53:44,087 | INFO     | all data control threads have been joined
[2026-02-28 20:54:20] 2026-02-28 19:53:44,208 | INFO     | [job] job monitor thread has finished
[2026-02-28 20:54:20] 2026-02-28 19:53:44,314 | INFO     | all job control threads have been joined
[2026-02-28 20:54:20] 2026-02-28 19:53:44,675 | INFO     | [payload] execute_payloads thread has finished
[2026-02-28 20:54:20] 2026-02-28 19:53:44,758 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-28 20:54:20] 2026-02-28 19:53:44,947 | INFO     | [payload] control thread has finished
[2026-02-28 20:54:20] 2026-02-28 19:53:45,008 | INFO     | [payload] validate_post thread has finished
[2026-02-28 20:54:20] 2026-02-28 19:53:45,010 | INFO     | [job] validate thread has finished
[2026-02-28 20:54:20] 2026-02-28 19:53:45,093 | INFO     | [data] control thread has finished
[2026-02-28 20:54:20] 2026-02-28 19:53:45,096 | INFO     | [job] create_data_payload thread has finished
[2026-02-28 20:54:20] 2026-02-28 19:53:45,128 | INFO     | [payload] validate_pre thread has finished
[2026-02-28 20:54:20] 2026-02-28 19:53:45,266 | INFO     | [data] copytool_in thread has finished
[2026-02-28 20:54:20] 2026-02-28 19:53:45,319 | INFO     | [job] control thread has finished
[2026-02-28 20:54:20] 2026-02-28 19:53:45,463 | INFO     | [payload] failed_post thread has finished
[2026-02-28 20:54:20] 2026-02-28 19:53:45,713 | INFO     | [data] copytool_out thread has finished
[2026-02-28 20:54:20] 2026-02-28 19:53:47,033 | INFO     | [data] queue_monitor thread has finished
[2026-02-28 20:54:20] 2026-02-28 19:54:12,908 | INFO     | PID=2195549 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-28 20:54:20] 2026-02-28 19:54:12,908 | INFO     | found 0 job(s) in 20 queues
[2026-02-28 20:54:20] 2026-02-28 19:54:12,908 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-28 20:54:20] 2026-02-28 19:54:12,908 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-28 20:54:20] 2026-02-28 19:54:14,488 | INFO     | [monitor] cgroup control has ended
[2026-02-28 20:54:20] 2026-02-28 19:54:15,511 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140081436583744)>', '<ExcThread(monitor, started 140080811333376)>']
[2026-02-28 20:54:20] 2026-02-28 19:54:15,924 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-28 20:54:20] 2026-02-28 19:54:15,925 | INFO     | [monitor] control thread has ended
[2026-02-28 20:54:20] 2026-02-28 19:54:20,537 | INFO     | all workflow threads have been joined
[2026-02-28 20:54:20] 2026-02-28 19:54:20,537 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-28 20:54:20] 2026-02-28 19:54:20,537 | INFO     | traces error code: 0
[2026-02-28 20:54:20] 2026-02-28 19:54:20,537 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-28 20:54:20] 2026-02-28 19:54:20,588 [wrapper] ==== pilot stdout END ====
[2026-02-28 20:54:20] 2026-02-28 19:54:20,590 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-28 20:54:20] 2026-02-28 19:54:20,592 [wrapper] pilotpid: 2195549
[2026-02-28 20:54:20] 2026-02-28 19:54:20,595 [wrapper] Pilot exit status: 0
[2026-02-28 20:54:20] 2026-02-28 19:54:20,602 [wrapper] pandaids: 7032464933
[2026-02-28 20:54:20] 2026-02-28 19:54:20,617 [wrapper] cleanup supervisor_pilot 2205027 2195550
[2026-02-28 20:54:20] 2026-02-28 19:54:20,619 [wrapper] Test setup, not cleaning
[2026-02-28 20:54:20] 2026-02-28 19:54:20,622 [wrapper] apfmon messages muted
[2026-02-28 20:54:20] 2026-02-28 19:54:20,624 [wrapper] ==== wrapper stdout END ====
[2026-02-28 20:54:20] 2026-02-28 19:54:20,626 [wrapper] ==== wrapper stderr END ====
[2026-02-28 20:54:20]  *** Error codes and diagnostics ***
[2026-02-28 20:54:20]     "exeErrorCode": 0,
[2026-02-28 20:54:20]     "exeErrorDiag": "",
[2026-02-28 20:54:20]     "pilotErrorCode": 0,
[2026-02-28 20:54:20]     "pilotErrorDiag": "",
[2026-02-28 20:54:20]  *** Listing of results directory ***
[2026-02-28 20:54:20] total 330624
[2026-02-28 20:54:20] -rw-r--r-- 1 boinc boinc    584627 Feb 28 01:57 pilot3.tar.gz
[2026-02-28 20:54:20] -rwx------ 1 boinc boinc     36322 Feb 28 02:00 runpilot2-wrapper.sh
[2026-02-28 20:54:20] -rw-r--r-- 1 boinc boinc      5111 Feb 28 02:02 queuedata.json
[2026-02-28 20:54:20] -rw-r--r-- 1 boinc boinc       100 Feb 28 19:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-28 20:54:20] -rwxr-xr-x 1 boinc boinc      7986 Feb 28 19:48 run_atlas
[2026-02-28 20:54:20] -rw-r--r-- 1 boinc boinc       105 Feb 28 19:48 job.xml
[2026-02-28 20:54:20] -rw-r--r-- 2 boinc boinc 187805064 Feb 28 19:48 EVNT.48700920._000031.pool.root.1
[2026-02-28 20:54:20] -rw-r--r-- 2 boinc boinc    597933 Feb 28 19:48 input.tar.gz
[2026-02-28 20:54:20] -rw-r--r-- 2 boinc boinc     15845 Feb 28 19:48 start_atlas.sh
[2026-02-28 20:54:20] drwxrwx--x 2 boinc boinc      4096 Feb 28 19:48 shared
[2026-02-28 20:54:20] -rw-r--r-- 1 boinc boinc         0 Feb 28 19:48 boinc_setup_complete
[2026-02-28 20:54:20] -rw-r--r-- 1 boinc boinc      6446 Feb 28 19:48 init_data.xml
[2026-02-28 20:54:20] -rw-r--r-- 1 boinc boinc         0 Feb 28 19:48 boinc_lockfile
[2026-02-28 20:54:20] -rw-r--r-- 1 boinc boinc      2514 Feb 28 19:48 pandaJob.out
[2026-02-28 20:54:20] -rw------- 1 boinc boinc    998790 Feb 28 19:49 agis_schedconf.cvmfs.json
[2026-02-28 20:54:20] -rw------- 1 boinc boinc   1513015 Feb 28 19:49 agis_ddmendpoints.agis.ALL.json
[2026-02-28 20:54:20] -rw------- 1 boinc boinc       423 Feb 28 19:49 workernode_map.json
[2026-02-28 20:54:20] drwx------ 5 boinc boinc      4096 Feb 28 19:49 pilot3
[2026-02-28 20:54:20] -rw------- 1 boinc boinc 145166806 Feb 28 20:53 HITS.48700922._000772.pool.root.1
[2026-02-28 20:54:20] -rw------- 1 boinc boinc        95 Feb 28 20:53 pilot_heartbeat.json
[2026-02-28 20:54:20] -rw-r--r-- 1 boinc boinc       529 Feb 28 20:53 boinc_task_state.xml
[2026-02-28 20:54:20] -rw------- 1 boinc boinc      1012 Feb 28 20:53 memory_monitor_summary.json
[2026-02-28 20:54:20] -rw------- 1 boinc boinc    250759 Feb 28 20:53 log.48700922._000772.job.log.tgz.1
[2026-02-28 20:54:20] -rw------- 1 boinc boinc      6285 Feb 28 20:53 heartbeat.json
[2026-02-28 20:54:20] -rw-r--r-- 1 boinc boinc      8192 Feb 28 20:53 boinc_mmap_file
[2026-02-28 20:54:20] -rw-r--r-- 1 boinc boinc        27 Feb 28 20:53 wrapper_checkpoint.txt
[2026-02-28 20:54:20] -rw------- 1 boinc boinc      4748 Feb 28 20:54 pilotlog.txt
[2026-02-28 20:54:20] -rw------- 1 boinc boinc    580122 Feb 28 20:54 log.48700922._000772.job.log.1
[2026-02-28 20:54:20] -rw------- 1 boinc boinc       357 Feb 28 20:54 output.list
[2026-02-28 20:54:20] -rw-r--r-- 1 boinc boinc       620 Feb 28 20:54 runtime_log
[2026-02-28 20:54:20] -rw------- 1 boinc boinc    849920 Feb 28 20:54 result.tar.gz
[2026-02-28 20:54:20] -rw------- 1 boinc boinc       657 Feb 28 20:54 yajKDmXsNG9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmtB6KDmcTmtKn.diag
[2026-02-28 20:54:20] -rw-r--r-- 1 boinc boinc      8896 Feb 28 20:54 runtime_log.err
[2026-02-28 20:54:20] -rw-r--r-- 1 boinc boinc     12640 Feb 28 20:54 stderr.txt
[2026-02-28 20:54:20] HITS file was successfully produced:
[2026-02-28 20:54:20] -rw------- 1 boinc boinc 145166806 Feb 28 20:53 shared/HITS.pool.root.1
[2026-02-28 20:54:20]  *** Contents of shared directory: ***
[2026-02-28 20:54:20] total 326612
[2026-02-28 20:54:20] -rw-r--r-- 2 boinc boinc 187805064 Feb 28 19:48 ATLAS.root_0
[2026-02-28 20:54:20] -rw-r--r-- 2 boinc boinc    597933 Feb 28 19:48 input.tar.gz
[2026-02-28 20:54:20] -rw-r--r-- 2 boinc boinc     15845 Feb 28 19:48 start_atlas.sh
[2026-02-28 20:54:20] -rw------- 1 boinc boinc 145166806 Feb 28 20:53 HITS.pool.root.1
[2026-02-28 20:54:20] -rw------- 1 boinc boinc    849920 Feb 28 20:54 result.tar.gz
20:54:21 (2191508): run_atlas exited; CPU time 10899.352336
20:54:21 (2191508): called boinc_finish(0)

</stderr_txt>
]]>

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