Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:14:34 (3031776): wrapper (7.7.26015): starting
04:14:34 (3031776): wrapper: running run_atlas (--nthreads 3)
[2026-03-01 04:14:34] Arguments: --nthreads 3
[2026-03-01 04:14:34] Threads: 3
[2026-03-01 04:14:34] Checking for CVMFS
[2026-03-01 04:14:34] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-01 04:14:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-01 04:14:35] Running cvmfs_config stat atlas.cern.ch
[2026-03-01 04:14:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-01 04:14:35] 2.9.2.0 2730021 2534 76816 156755 3 49 29656466 36864000 0 130560 0 846165 99.981 93980 13245 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-01 04:14:35] CVMFS is ok
[2026-03-01 04:14:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-01 04:14:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-01 04:14:35] Further information can be found at the LHC@home message board.
[2026-03-01 04:14:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-01 04:14:35] Checking for apptainer binary...
[2026-03-01 04:14:35] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-01 04:14:35] Running /usr/bin/apptainer --version
[2026-03-01 04:14:35] apptainer version 1.4.1-1.1
[2026-03-01 04:14:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-01 04:14:35] thA349
[2026-03-01 04:14:35] apptainer works
[2026-03-01 04:14:35] Set ATHENA_PROC_NUMBER=3
[2026-03-01 04:14:35] Set ATHENA_CORE_NUMBER=3
[2026-03-01 04:14:35] Starting ATLAS job with PandaID=7032345347
[2026-03-01 04:14:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-01 05:51:59]  *** The last 200 lines of the pilot log: ***
[2026-03-01 05:51:59] 2026-03-01 04:51:27,223 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-01 05:51:59] 2026-03-01 04:51:27,223 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-01 05:51:59] 2026-03-01 04:51:27,223 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-01 05:51:59] 2026-03-01 04:51:27,223 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-01 05:51:59] 2026-03-01 04:51:27,223 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-01 05:51:59] 2026-03-01 04:51:27,223 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-01 05:51:59] 2026-03-01 04:51:27,223 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-01 05:51:59] 2026-03-01 04:51:27,223 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-01 05:51:59] 2026-03-01 04:51:27,223 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-01 05:51:59] 2026-03-01 04:51:27,223 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-01 05:51:59] 2026-03-01 04:51:27,223 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-01 05:51:59] 2026-03-01 04:51:27,223 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-01 05:51:59] 2026-03-01 04:51:27,223 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-01 05:51:59] 2026-03-01 04:51:27,223 | INFO     | job 7032345347 has completed (purged errors)
[2026-03-01 05:51:59] 2026-03-01 04:51:27,223 | INFO     | overall cleanup function is called
[2026-03-01 05:51:59] 2026-03-01 04:51:28,230 | INFO     | --- collectZombieJob: --- 10, [3040243]
[2026-03-01 05:51:59] 2026-03-01 04:51:28,230 | INFO     | zombie collector waiting for pid 3040243
[2026-03-01 05:51:59] 2026-03-01 04:51:28,230 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-01 05:51:59] 2026-03-01 04:51:28,231 | INFO     | collected zombie processes
[2026-03-01 05:51:59] 2026-03-01 04:51:28,231 | INFO     | will attempt to kill all subprocesses of pid=3040243
[2026-03-01 05:51:59] 2026-03-01 04:51:28,271 | INFO     | process IDs to be killed: [3040243] (in reverse order)
[2026-03-01 05:51:59] 2026-03-01 04:51:28,294 | WARNING  | found no corresponding commands to process id(s)
[2026-03-01 05:51:59] 2026-03-01 04:51:28,294 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-01 05:51:59] 2026-03-01 04:51:28,295 | INFO     | did not find any defunct processes belonging to 3040243
[2026-03-01 05:51:59] 2026-03-01 04:51:28,296 | INFO     | did not find any defunct processes belonging to 3040243
[2026-03-01 05:51:59] 2026-03-01 04:51:28,296 | INFO     | ready for new job
[2026-03-01 05:51:59] 2026-03-01 04:51:28,296 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-01 05:51:59] 2026-03-01 04:51:28,297 | INFO     | **************************************
[2026-03-01 05:51:59] 2026-03-01 04:51:28,297 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-01 05:51:59] 2026-03-01 04:51:28,297 | INFO     | **************************************
[2026-03-01 05:51:59] 2026-03-01 04:51:28,297 | INFO     | 
[2026-03-01 05:51:59] 2026-03-01 04:51:28,298 | INFO     | architecture information:
[2026-03-01 05:51:59] 2026-03-01 04:51:28,298 | INFO     | executing command: cat /etc/os-release
[2026-03-01 05:51:59] 2026-03-01 04:51:28,306 | INFO     | cat /etc/os-release:
[2026-03-01 05:51:59] NAME="CentOS Linux"
[2026-03-01 05:51:59] VERSION="7 (Core)"
[2026-03-01 05:51:59] ID="centos"
[2026-03-01 05:51:59] ID_LIKE="rhel fedora"
[2026-03-01 05:51:59] VERSION_ID="7"
[2026-03-01 05:51:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-01 05:51:59] ANSI_COLOR="0;31"
[2026-03-01 05:51:59] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-01 05:51:59] HOME_URL="https://www.centos.org/"
[2026-03-01 05:51:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-01 05:51:59] 
[2026-03-01 05:51:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-01 05:51:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-01 05:51:59] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-01 05:51:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-01 05:51:59] 
[2026-03-01 05:51:59] 2026-03-01 04:51:28,306 | INFO     | **************************************
[2026-03-01 05:51:59] 2026-03-01 04:51:28,809 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-01 05:51:59] 2026-03-01 04:51:28,822 | INFO     | sufficient remaining disk space (274288607232 B)
[2026-03-01 05:51:59] 2026-03-01 04:51:28,822 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-01 05:51:59] 2026-03-01 04:51:28,822 | INFO     | current server update state: UPDATING_FINAL
[2026-03-01 05:51:59] 2026-03-01 04:51:28,822 | INFO     | update_server=False
[2026-03-01 05:51:59] 2026-03-01 04:51:28,822 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-01 05:51:59] 2026-03-01 04:51:28,822 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-01 05:51:59] 2026-03-01 04:51:28,822 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-01 05:51:59] 2026-03-01 04:51:28,822 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-01 05:51:59] 2026-03-01 04:51:28,972 | INFO     | all data control threads have been joined
[2026-03-01 05:51:59] 2026-03-01 04:51:28,974 | INFO     | all job control threads have been joined
[2026-03-01 05:51:59] 2026-03-01 04:51:29,099 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-01 05:51:59] 2026-03-01 04:51:29,099 | INFO     | aborting loop
[2026-03-01 05:51:59] 2026-03-01 04:51:29,828 | INFO     | [job] retrieve thread has finished
[2026-03-01 05:51:59] 2026-03-01 04:51:29,828 | INFO     | [job] queue monitor thread has finished
[2026-03-01 05:51:59] 2026-03-01 04:51:29,978 | INFO     | [data] control thread has finished
[2026-03-01 05:51:59] 2026-03-01 04:51:29,979 | INFO     | [job] control thread has finished
[2026-03-01 05:51:59] 2026-03-01 04:51:30,105 | INFO     | [job] job monitor thread has finished
[2026-03-01 05:51:59] 2026-03-01 04:51:30,126 | INFO     | all payload control threads have been joined
[2026-03-01 05:51:59] 2026-03-01 04:51:30,239 | INFO     | [payload] failed_post thread has finished
[2026-03-01 05:51:59] 2026-03-01 04:51:30,363 | INFO     | [payload] execute_payloads thread has finished
[2026-03-01 05:51:59] 2026-03-01 04:51:30,470 | INFO     | [job] validate thread has finished
[2026-03-01 05:51:59] 2026-03-01 04:51:30,513 | INFO     | [job] create_data_payload thread has finished
[2026-03-01 05:51:59] 2026-03-01 04:51:30,631 | INFO     | [payload] validate_pre thread has finished
[2026-03-01 05:51:59] 2026-03-01 04:51:30,664 | INFO     | [data] copytool_in thread has finished
[2026-03-01 05:51:59] 2026-03-01 04:51:30,789 | INFO     | [payload] validate_post thread has finished
[2026-03-01 05:51:59] 2026-03-01 04:51:30,829 | INFO     | [data] copytool_out thread has finished
[2026-03-01 05:51:59] 2026-03-01 04:51:30,881 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-01 05:51:59] 2026-03-01 04:51:31,132 | INFO     | [payload] control thread has finished
[2026-03-01 05:51:59] 2026-03-01 04:51:32,829 | INFO     | [data] queue_monitor thread has finished
[2026-03-01 05:51:59] 2026-03-01 04:51:50,670 | INFO     | [monitor] cgroup control has ended
[2026-03-01 05:51:59] 2026-03-01 04:51:51,874 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140230270457664)>', '<ExcThread(monitor, started 140229784618752)>']
[2026-03-01 05:51:59] 2026-03-01 04:51:56,897 | INFO     | all workflow threads have been joined
[2026-03-01 05:51:59] 2026-03-01 04:51:56,898 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-01 05:51:59] 2026-03-01 04:51:56,898 | INFO     | traces error code: 0
[2026-03-01 05:51:59] 2026-03-01 04:51:56,898 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-01 05:51:59] 2026-03-01 04:51:59,713 | INFO     | PID=3035822 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-01 05:51:59] 2026-03-01 04:51:59,714 | INFO     | found 0 job(s) in 20 queues
[2026-03-01 05:51:59] 2026-03-01 04:51:59,714 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-01 05:51:59] 2026-03-01 04:51:59,714 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-01 05:51:59] 2026-03-01 04:51:59,714 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-01 05:51:59] 2026-03-01 04:51:59,714 | INFO     | [monitor] control thread has ended
[2026-03-01 05:51:59] 2026-03-01 04:51:59,759 [wrapper] ==== pilot stdout END ====
[2026-03-01 05:51:59] 2026-03-01 04:51:59,761 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-01 05:51:59] 2026-03-01 04:51:59,764 [wrapper] pilotpid: 3035822
[2026-03-01 05:51:59] 2026-03-01 04:51:59,766 [wrapper] Pilot exit status: 0
[2026-03-01 05:51:59] 2026-03-01 04:51:59,773 [wrapper] pandaids: 7032345347
[2026-03-01 05:51:59] 2026-03-01 04:51:59,788 [wrapper] cleanup supervisor_pilot 3045882 3035823
[2026-03-01 05:51:59] 2026-03-01 04:51:59,790 [wrapper] Test setup, not cleaning
[2026-03-01 05:51:59] 2026-03-01 04:51:59,792 [wrapper] apfmon messages muted
[2026-03-01 05:51:59] 2026-03-01 04:51:59,794 [wrapper] ==== wrapper stdout END ====
[2026-03-01 05:51:59] 2026-03-01 04:51:59,797 [wrapper] ==== wrapper stderr END ====
[2026-03-01 05:51:59]  *** Error codes and diagnostics ***
[2026-03-01 05:51:59]     "exeErrorCode": 0,
[2026-03-01 05:51:59]     "exeErrorDiag": "",
[2026-03-01 05:51:59]     "pilotErrorCode": 0,
[2026-03-01 05:51:59]     "pilotErrorDiag": "",
[2026-03-01 05:51:59]  *** Listing of results directory ***
[2026-03-01 05:51:59] total 516776
[2026-03-01 05:51:59] -rw-r--r-- 1 boinc boinc    584627 Feb 28 01:57 pilot3.tar.gz
[2026-03-01 05:51:59] -rwx------ 1 boinc boinc     36322 Feb 28 02:01 runpilot2-wrapper.sh
[2026-03-01 05:51:59] -rw-r--r-- 1 boinc boinc      5111 Feb 28 02:02 queuedata.json
[2026-03-01 05:51:59] -rw-r--r-- 1 boinc boinc       100 Mar  1 04:14 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-01 05:51:59] -rwxr-xr-x 1 boinc boinc      7986 Mar  1 04:14 run_atlas
[2026-03-01 05:51:59] -rw-r--r-- 1 boinc boinc       105 Mar  1 04:14 job.xml
[2026-03-01 05:51:59] -rw-r--r-- 2 boinc boinc 289501799 Mar  1 04:14 EVNT.48220197._000085.pool.root.1
[2026-03-01 05:51:59] drwxrwx--x 2 boinc boinc      4096 Mar  1 04:14 shared
[2026-03-01 05:51:59] -rw-r--r-- 2 boinc boinc    597971 Mar  1 04:14 input.tar.gz
[2026-03-01 05:51:59] -rw-r--r-- 2 boinc boinc     15845 Mar  1 04:14 start_atlas.sh
[2026-03-01 05:51:59] -rw-r--r-- 1 boinc boinc         0 Mar  1 04:14 boinc_setup_complete
[2026-03-01 05:51:59] -rw-r--r-- 1 boinc boinc      6445 Mar  1 04:14 init_data.xml
[2026-03-01 05:51:59] -rw-r--r-- 1 boinc boinc         0 Mar  1 04:14 boinc_lockfile
[2026-03-01 05:51:59] -rw-r--r-- 1 boinc boinc      2566 Mar  1 04:14 pandaJob.out
[2026-03-01 05:51:59] -rw------- 1 boinc boinc    998790 Mar  1 04:14 agis_schedconf.cvmfs.json
[2026-03-01 05:51:59] -rw------- 1 boinc boinc   1513015 Mar  1 04:14 agis_ddmendpoints.agis.ALL.json
[2026-03-01 05:51:59] -rw------- 1 boinc boinc       423 Mar  1 04:14 workernode_map.json
[2026-03-01 05:51:59] drwx------ 5 boinc boinc      4096 Mar  1 04:14 pilot3
[2026-03-01 05:51:59] -rw-r--r-- 1 boinc boinc       529 Mar  1 05:51 boinc_task_state.xml
[2026-03-01 05:51:59] -rw------- 1 boinc boinc 233544168 Mar  1 05:51 HITS.48838577._002136.pool.root.1
[2026-03-01 05:51:59] -rw------- 1 boinc boinc        95 Mar  1 05:51 pilot_heartbeat.json
[2026-03-01 05:51:59] -rw------- 1 boinc boinc      1018 Mar  1 05:51 memory_monitor_summary.json
[2026-03-01 05:51:59] -rw------- 1 boinc boinc    267352 Mar  1 05:51 log.48838577._002136.job.log.tgz.1
[2026-03-01 05:51:59] -rw------- 1 boinc boinc      6300 Mar  1 05:51 heartbeat.json
[2026-03-01 05:51:59] -rw-r--r-- 1 boinc boinc      8192 Mar  1 05:51 boinc_mmap_file
[2026-03-01 05:51:59] -rw-r--r-- 1 boinc boinc        27 Mar  1 05:51 wrapper_checkpoint.txt
[2026-03-01 05:51:59] -rw------- 1 boinc boinc       747 Mar  1 05:51 pilotlog.txt
[2026-03-01 05:51:59] -rw------- 1 boinc boinc    842632 Mar  1 05:51 log.48838577._002136.job.log.1
[2026-03-01 05:51:59] -rw------- 1 boinc boinc       357 Mar  1 05:51 output.list
[2026-03-01 05:51:59] -rw-r--r-- 1 boinc boinc       620 Mar  1 05:51 runtime_log
[2026-03-01 05:51:59] -rw------- 1 boinc boinc   1126400 Mar  1 05:51 result.tar.gz
[2026-03-01 05:51:59] -rw-r--r-- 1 boinc boinc      8896 Mar  1 05:51 runtime_log.err
[2026-03-01 05:51:59] -rw------- 1 boinc boinc       657 Mar  1 05:51 7c0KDmpsNG9n9Rq4apOajLDm4fhM0noT9bVooX4SDmYS4KDmo8Bwin.diag
[2026-03-01 05:51:59] -rw-r--r-- 1 boinc boinc     12136 Mar  1 05:51 stderr.txt
[2026-03-01 05:51:59] HITS file was successfully produced:
[2026-03-01 05:51:59] -rw------- 1 boinc boinc 233544168 Mar  1 05:51 shared/HITS.pool.root.1
[2026-03-01 05:51:59]  *** Contents of shared directory: ***
[2026-03-01 05:51:59] total 512500
[2026-03-01 05:51:59] -rw-r--r-- 2 boinc boinc 289501799 Mar  1 04:14 ATLAS.root_0
[2026-03-01 05:51:59] -rw-r--r-- 2 boinc boinc    597971 Mar  1 04:14 input.tar.gz
[2026-03-01 05:51:59] -rw-r--r-- 2 boinc boinc     15845 Mar  1 04:14 start_atlas.sh
[2026-03-01 05:51:59] -rw------- 1 boinc boinc 233544168 Mar  1 05:51 HITS.pool.root.1
[2026-03-01 05:51:59] -rw------- 1 boinc boinc   1126400 Mar  1 05:51 result.tar.gz
05:52:01 (3031776): run_atlas exited; CPU time 16733.465749
05:52:01 (3031776): called boinc_finish(0)

</stderr_txt>
]]>

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