Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
10:05:47 (721116): wrapper (7.7.26015): starting
10:05:47 (721116): wrapper: running run_atlas (--nthreads 4)
[2026-02-28 10:05:47] Arguments: --nthreads 4
[2026-02-28 10:05:47] Threads: 4
[2026-02-28 10:05:47] Checking for CVMFS
[2026-02-28 10:05:47] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-28 10:05:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-28 10:05:47] Running cvmfs_config stat atlas.cern.ch
[2026-02-28 10:05:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-28 10:05:48] 2.13.1.0 3362211 4050 68652 156726 2 50 5879213 10240001 1824 130560 0 4073374 99.991 166069 636 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.101:3128 1
[2026-02-28 10:05:48] CVMFS is ok
[2026-02-28 10:05:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-28 10:05:48] Checking for apptainer binary...
[2026-02-28 10:05:48] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-28 10:05:48] Running /usr/bin/apptainer --version
[2026-02-28 10:05:48] apptainer version 1.4.5
[2026-02-28 10:05:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-28 10:05:48] atlas7l2
[2026-02-28 10:05:48] apptainer works
[2026-02-28 10:05:48] Set ATHENA_PROC_NUMBER=4
[2026-02-28 10:05:48] Set ATHENA_CORE_NUMBER=4
[2026-02-28 10:05:48] Starting ATLAS job with PandaID=7031283505
[2026-02-28 10:05:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc_data/boinc-01/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-28 14:47:29]  *** The last 200 lines of the pilot log: ***
[2026-02-28 14:47:29] 2026-02-28 13:46:25,094 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-28 14:47:29] 2026-02-28 13:46:25,096 | INFO     | fitting pss+swap vs Time
[2026-02-28 14:47:29] 2026-02-28 13:46:25,096 | INFO     | sum of square deviations: 6519285025.0
[2026-02-28 14:47:29] 2026-02-28 13:46:25,097 | INFO     | sum of deviations: 17504937589.999996
[2026-02-28 14:47:29] 2026-02-28 13:46:25,097 | INFO     | mean x: 1772277963.5
[2026-02-28 14:47:29] 2026-02-28 13:46:25,097 | INFO     | mean y: 2341111.5217391304
[2026-02-28 14:47:29] 2026-02-28 13:46:25,098 | INFO     | intersect: -4756403907.944531
[2026-02-28 14:47:29] 2026-02-28 13:46:25,098 | INFO     | chi2: 2.290446968987985
[2026-02-28 14:47:29] 2026-02-28 13:46:25,098 | INFO     | sum of square deviations: 6171352920.0
[2026-02-28 14:47:29] 2026-02-28 13:46:25,099 | INFO     | sum of deviations: 34295185821.00001
[2026-02-28 14:47:29] 2026-02-28 13:46:25,099 | INFO     | mean x: 1772277811.0
[2026-02-28 14:47:29] 2026-02-28 13:46:25,099 | INFO     | mean y: 2348360.254612546
[2026-02-28 14:47:29] 2026-02-28 13:46:25,099 | INFO     | intersect: -9846480193.643766
[2026-02-28 14:47:29] 2026-02-28 13:46:25,099 | INFO     | chi2: 1.523785223544077
[2026-02-28 14:47:29] 2026-02-28 13:46:25,099 | INFO     | current chi2=1.523785223544077 (change=33.472145647740156 %)
[2026-02-28 14:47:29] 2026-02-28 13:46:25,100 | INFO     | sum of square deviations: 5836025702.5
[2026-02-28 14:47:29] 2026-02-28 13:46:25,101 | INFO     | sum of deviations: 33634942042.500004
[2026-02-28 14:47:29] 2026-02-28 13:46:25,101 | INFO     | mean x: 1772277658.5
[2026-02-28 14:47:29] 2026-02-28 13:46:25,101 | INFO     | mean y: 2348059.9661654136
[2026-02-28 14:47:29] 2026-02-28 13:46:25,101 | INFO     | intersect: -10211872946.86209
[2026-02-28 14:47:29] 2026-02-28 13:46:25,101 | INFO     | chi2: 1.5243665688943406
[2026-02-28 14:47:29] 2026-02-28 13:46:25,101 | INFO     | current chi2=1.5243665688943406 (change=-0.03815139701325804 %)
[2026-02-28 14:47:29] 2026-02-28 13:46:25,101 | INFO     | right removable region: 265
[2026-02-28 14:47:29] 2026-02-28 13:46:25,101 | INFO     | sum of square deviations: 6171352920.0
[2026-02-28 14:47:29] 2026-02-28 13:46:25,102 | INFO     | sum of deviations: -19943480666.0
[2026-02-28 14:47:29] 2026-02-28 13:46:25,102 | INFO     | mean x: 1772278116.0
[2026-02-28 14:47:29] 2026-02-28 13:46:25,102 | INFO     | mean y: 2357367.6162361624
[2026-02-28 14:47:29] 2026-02-28 13:46:25,102 | INFO     | intersect: 5729690547.132552
[2026-02-28 14:47:29] 2026-02-28 13:46:25,103 | INFO     | chi2: 0.8660667013428424
[2026-02-28 14:47:29] 2026-02-28 13:46:25,103 | INFO     | current chi2=0.8660667013428424 (change=62.187873674040716 %)
[2026-02-28 14:47:29] 2026-02-28 13:46:25,103 | INFO     | sum of square deviations: 5836025702.5
[2026-02-28 14:47:29] 2026-02-28 13:46:25,104 | INFO     | sum of deviations: -8003348931.5
[2026-02-28 14:47:29] 2026-02-28 13:46:25,104 | INFO     | mean x: 1772278268.5
[2026-02-28 14:47:29] 2026-02-28 13:46:25,104 | INFO     | mean y: 2351922.6428571427
[2026-02-28 14:47:29] 2026-02-28 13:46:25,104 | INFO     | intersect: 2432800674.855176
[2026-02-28 14:47:29] 2026-02-28 13:46:25,104 | INFO     | chi2: 0.7883952776904878
[2026-02-28 14:47:29] 2026-02-28 13:46:25,104 | INFO     | current chi2=0.7883952776904878 (change=8.968295805845496 %)
[2026-02-28 14:47:29] 2026-02-28 13:46:25,104 | INFO     | left removable region: 20
[2026-02-28 14:47:29] 2026-02-28 13:46:25,105 | INFO     | sum of square deviations: 4560048290.0
[2026-02-28 14:47:29] 2026-02-28 13:46:25,105 | INFO     | sum of deviations: 4749561686.999999
[2026-02-28 14:47:29] 2026-02-28 13:46:25,105 | INFO     | mean x: 1772278238.0
[2026-02-28 14:47:29] 2026-02-28 13:46:25,106 | INFO     | mean y: 2361453.4653061223
[2026-02-28 14:47:29] 2026-02-28 13:46:25,106 | INFO     | intersect: -1843571809.208249
[2026-02-28 14:47:29] 2026-02-28 13:46:25,106 | INFO     | chi2: 0.0014466284477959441
[2026-02-28 14:47:29] 2026-02-28 13:46:25,106 | INFO     | current memory leak: 1.04 B/s (using 245 data points, chi2=0.00)
[2026-02-28 14:47:29] 2026-02-28 13:46:25,106 | INFO     | could have reported an average CPU frequency of 2400 MHz (13 samples)
[2026-02-28 14:47:29] 2026-02-28 13:46:25,106 | INFO     | ..............................
[2026-02-28 14:47:29] 2026-02-28 13:46:25,106 | INFO     | . Timing measurements:
[2026-02-28 14:47:29] 2026-02-28 13:46:25,106 | INFO     | . get job = 0 s
[2026-02-28 14:47:29] 2026-02-28 13:46:25,106 | INFO     | . initial setup = 3 s
[2026-02-28 14:47:29] 2026-02-28 13:46:25,106 | INFO     | . payload setup = 3 s
[2026-02-28 14:47:29] 2026-02-28 13:46:25,106 | INFO     | . stage-in = 0 s
[2026-02-28 14:47:29] 2026-02-28 13:46:25,106 | INFO     | . payload execution = 16805 s
[2026-02-28 14:47:29] 2026-02-28 13:46:25,106 | INFO     | . stage-out = 1 s
[2026-02-28 14:47:29] 2026-02-28 13:46:25,106 | INFO     | . log creation = 0 s
[2026-02-28 14:47:29] 2026-02-28 13:46:25,107 | INFO     | ..............................
[2026-02-28 14:47:29] 2026-02-28 13:46:25,153 | INFO     | 
[2026-02-28 14:47:29] 2026-02-28 13:46:25,153 | INFO     | job summary report
[2026-02-28 14:47:29] 2026-02-28 13:46:25,153 | INFO     | --------------------------------------------------
[2026-02-28 14:47:29] 2026-02-28 13:46:25,153 | INFO     | PanDA job id: 7031283505
[2026-02-28 14:47:29] 2026-02-28 13:46:25,154 | INFO     | task id: 48842588
[2026-02-28 14:47:29] 2026-02-28 13:46:25,154 | INFO     | errors: (none)
[2026-02-28 14:47:29] 2026-02-28 13:46:25,154 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-28 14:47:29] 2026-02-28 13:46:25,154 | INFO     | pilot state: finished 
[2026-02-28 14:47:29] 2026-02-28 13:46:25,154 | INFO     | transexitcode: 0
[2026-02-28 14:47:29] 2026-02-28 13:46:25,154 | INFO     | exeerrorcode: 0
[2026-02-28 14:47:29] 2026-02-28 13:46:25,154 | INFO     | exeerrordiag: 
[2026-02-28 14:47:29] 2026-02-28 13:46:25,154 | INFO     | exitcode: 0
[2026-02-28 14:47:29] 2026-02-28 13:46:25,155 | INFO     | exitmsg: OK
[2026-02-28 14:47:29] 2026-02-28 13:46:25,155 | INFO     | cpuconsumptiontime: 65587 s
[2026-02-28 14:47:29] 2026-02-28 13:46:25,155 | INFO     | nevents: 400
[2026-02-28 14:47:29] 2026-02-28 13:46:25,155 | INFO     | neventsw: 0
[2026-02-28 14:47:29] 2026-02-28 13:46:25,155 | INFO     | pid: 729577
[2026-02-28 14:47:29] 2026-02-28 13:46:25,155 | INFO     | pgrp: 729577
[2026-02-28 14:47:29] 2026-02-28 13:46:25,155 | INFO     | corecount: 4
[2026-02-28 14:47:29] 2026-02-28 13:46:25,155 | INFO     | event service: False
[2026-02-28 14:47:29] 2026-02-28 13:46:25,155 | INFO     | sizes: {0: 2282341, 11: 2282341, 16812: 2314467, 16814: 2323493, 16815: 2323743}
[2026-02-28 14:47:29] 2026-02-28 13:46:25,155 | INFO     | --------------------------------------------------
[2026-02-28 14:47:29] 2026-02-28 13:46:25,155 | INFO     | 
[2026-02-28 14:47:29] 2026-02-28 13:46:25,155 | INFO     | executing command: ls -lF /var/lib/boinc_data/boinc-01/slots/1
[2026-02-28 14:47:29] 2026-02-28 13:46:25,176 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-28 14:47:29] 2026-02-28 13:46:25,176 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-28 14:47:29] 2026-02-28 13:46:25,177 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-28 14:47:29] 2026-02-28 13:46:25,177 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-28 14:47:29] 2026-02-28 13:46:25,177 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-28 14:47:29] 2026-02-28 13:46:25,177 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-28 14:47:29] 2026-02-28 13:46:25,177 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-28 14:47:29] 2026-02-28 13:46:25,177 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-28 14:47:29] 2026-02-28 13:46:25,177 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-28 14:47:29] 2026-02-28 13:46:25,178 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-28 14:47:29] 2026-02-28 13:46:25,178 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-28 14:47:29] 2026-02-28 13:46:25,178 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-28 14:47:29] 2026-02-28 13:46:25,178 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-28 14:47:29] 2026-02-28 13:46:25,178 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-28 14:47:29] 2026-02-28 13:46:25,178 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-28 14:47:29] 2026-02-28 13:46:25,178 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-28 14:47:29] 2026-02-28 13:46:25,178 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-28 14:47:29] 2026-02-28 13:46:25,179 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-28 14:47:29] 2026-02-28 13:46:25,179 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-28 14:47:29] 2026-02-28 13:46:25,179 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-28 14:47:29] 2026-02-28 13:46:25,179 | INFO     | job 7031283505 has completed (purged errors)
[2026-02-28 14:47:29] 2026-02-28 13:46:25,179 | INFO     | overall cleanup function is called
[2026-02-28 14:47:29] 2026-02-28 13:46:25,610 | INFO     | PID=725090 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-28 14:47:29] 2026-02-28 13:46:25,610 | INFO     | .. there are 3 such processes running
[2026-02-28 14:47:29] 2026-02-28 13:46:26,188 | INFO     | --- collectZombieJob: --- 10, [729577]
[2026-02-28 14:47:29] 2026-02-28 13:46:26,189 | INFO     | zombie collector waiting for pid 729577
[2026-02-28 14:47:29] 2026-02-28 13:46:26,189 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-28 14:47:29] 2026-02-28 13:46:26,189 | INFO     | collected zombie processes
[2026-02-28 14:47:29] 2026-02-28 13:46:26,189 | INFO     | will attempt to kill all subprocesses of pid=729577
[2026-02-28 14:47:29] 2026-02-28 13:46:26,313 | INFO     | process IDs to be killed: [729577] (in reverse order)
[2026-02-28 14:47:29] 2026-02-28 13:46:26,349 | WARNING  | found no corresponding commands to process id(s)
[2026-02-28 14:47:29] 2026-02-28 13:46:26,349 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-28 14:47:29] 2026-02-28 13:46:26,361 | INFO     | did not find any defunct processes belonging to 729577
[2026-02-28 14:47:29] 2026-02-28 13:46:26,369 | INFO     | did not find any defunct processes belonging to 729577
[2026-02-28 14:47:29] 2026-02-28 13:46:26,369 | INFO     | ready for new job
[2026-02-28 14:47:29] 2026-02-28 13:46:26,369 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-28 14:47:29] 2026-02-28 13:46:26,370 | INFO     | **************************************
[2026-02-28 14:47:29] 2026-02-28 13:46:26,371 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-28 14:47:29] 2026-02-28 13:46:26,371 | INFO     | **************************************
[2026-02-28 14:47:29] 2026-02-28 13:46:26,371 | INFO     | 
[2026-02-28 14:47:29] 2026-02-28 13:46:26,371 | INFO     | pilot is running in a VM
[2026-02-28 14:47:29] 2026-02-28 13:46:26,371 | INFO     | architecture information:
[2026-02-28 14:47:29] 2026-02-28 13:46:26,372 | INFO     | executing command: cat /etc/os-release
[2026-02-28 14:47:29] 2026-02-28 13:46:26,386 | INFO     | cat /etc/os-release:
[2026-02-28 14:47:29] NAME="CentOS Linux"
[2026-02-28 14:47:29] VERSION="7 (Core)"
[2026-02-28 14:47:29] ID="centos"
[2026-02-28 14:47:29] ID_LIKE="rhel fedora"
[2026-02-28 14:47:29] VERSION_ID="7"
[2026-02-28 14:47:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-28 14:47:29] ANSI_COLOR="0;31"
[2026-02-28 14:47:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-28 14:47:29] HOME_URL="https://www.centos.org/"
[2026-02-28 14:47:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-28 14:47:29] 
[2026-02-28 14:47:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-28 14:47:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-28 14:47:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-28 14:47:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-28 14:47:29] 
[2026-02-28 14:47:29] 2026-02-28 13:46:26,387 | INFO     | **************************************
[2026-02-28 14:47:29] 2026-02-28 13:46:26,406 | WARNING  | process 729577 can no longer be monitored (due to stat problems) - aborting
[2026-02-28 14:47:29] 2026-02-28 13:46:26,463 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-02-28 14:47:29] 2026-02-28 13:46:26,546 | INFO     | number of running child processes to parent process 729577: 1
[2026-02-28 14:47:29] 2026-02-28 13:46:26,546 | INFO     | maximum number of monitored processes: 6
[2026-02-28 14:47:29] 2026-02-28 13:46:26,546 | INFO     | aborting job monitoring since job object (job id=7031283505) has expired
[2026-02-28 14:47:29] 2026-02-28 13:46:26,890 | INFO     | executing command: df -mP /var/lib/boinc_data/boinc-01/slots/1
[2026-02-28 14:47:29] 2026-02-28 13:46:26,910 | INFO     | sufficient remaining disk space (164455514112 B)
[2026-02-28 14:47:29] 2026-02-28 13:46:26,911 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-28 14:47:29] 2026-02-28 13:46:26,911 | INFO     | current server update state: UPDATING_FINAL
[2026-02-28 14:47:29] 2026-02-28 13:46:26,911 | INFO     | update_server=False
[2026-02-28 14:47:29] 2026-02-28 13:46:26,912 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-28 14:47:29] 2026-02-28 13:46:26,912 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-28 14:47:29] 2026-02-28 13:46:26,913 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-28 14:47:29] 2026-02-28 13:46:26,913 | INFO     | will abort loop
[2026-02-28 14:47:29] 2026-02-28 13:46:26,913 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-28 14:47:29] 2026-02-28 13:46:27,300 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-28 14:47:29] 2026-02-28 13:46:27,720 | INFO     | all data control threads have been joined
[2026-02-28 14:47:29] 2026-02-28 13:46:27,737 | INFO     | all job control threads have been joined
[2026-02-28 14:47:29] 2026-02-28 13:46:27,917 | INFO     | [job] retrieve thread has finished
[2026-02-28 14:47:29] 2026-02-28 13:46:27,918 | INFO     | [job] queue monitor thread has finished
[2026-02-28 14:47:29] 2026-02-28 13:46:27,919 | INFO     | [job] job monitor thread has finished
[2026-02-28 14:47:29] 2026-02-28 13:46:28,029 | INFO     | [payload] validate_post thread has finished
[2026-02-28 14:47:29] 2026-02-28 13:46:28,197 | INFO     | [job] validate thread has finished
[2026-02-28 14:47:29] 2026-02-28 13:46:28,333 | INFO     | [data] copytool_in thread has finished
[2026-02-28 14:47:29] 2026-02-28 13:46:28,341 | INFO     | [job] create_data_payload thread has finished
[2026-02-28 14:47:29] 2026-02-28 13:46:28,385 | INFO     | all payload control threads have been joined
[2026-02-28 14:47:29] 2026-02-28 13:46:28,726 | INFO     | [data] control thread has finished
[2026-02-28 14:47:29] 2026-02-28 13:46:28,743 | INFO     | [job] control thread has finished
[2026-02-28 14:47:29] 2026-02-28 13:46:28,860 | INFO     | [payload] execute_payloads thread has finished
[2026-02-28 14:47:29] 2026-02-28 13:46:29,000 | INFO     | [payload] validate_pre thread has finished
[2026-02-28 14:47:29] 2026-02-28 13:46:29,135 | INFO     | [payload] failed_post thread has finished
[2026-02-28 14:47:29] 2026-02-28 13:46:29,306 | INFO     | [data] copytool_out thread has finished
[2026-02-28 14:47:29] 2026-02-28 13:46:29,390 | INFO     | [payload] control thread has finished
[2026-02-28 14:47:29] 2026-02-28 13:46:30,920 | INFO     | [data] queue_monitor thread has finished
[2026-02-28 14:47:29] 2026-02-28 13:46:37,413 | INFO     | job.realtimelogging is not enabled
[2026-02-28 14:47:29] 2026-02-28 13:46:38,418 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-28 14:47:29] 2026-02-28 13:46:57,781 | INFO     | PID=725090 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-28 14:47:29] 2026-02-28 13:46:57,781 | INFO     | .. there are 3 such processes running
[2026-02-28 14:47:29] 2026-02-28 13:46:57,781 | INFO     | found 0 job(s) in 20 queues
[2026-02-28 14:47:29] 2026-02-28 13:46:57,781 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-28 14:47:29] 2026-02-28 13:46:57,781 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-28 14:47:29] 2026-02-28 13:47:22,094 | INFO     | [monitor] cgroup control has ended
[2026-02-28 14:47:29] 2026-02-28 13:47:24,097 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 137445245880128)>', '<ExcThread(monitor, started 137444892587776)>']
[2026-02-28 14:47:29] 2026-02-28 13:47:24,895 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-28 14:47:29] 2026-02-28 13:47:24,895 | INFO     | [monitor] control thread has ended
[2026-02-28 14:47:29] 2026-02-28 13:47:29,116 | INFO     | all workflow threads have been joined
[2026-02-28 14:47:29] 2026-02-28 13:47:29,117 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-28 14:47:29] 2026-02-28 13:47:29,117 | INFO     | traces error code: 0
[2026-02-28 14:47:29] 2026-02-28 13:47:29,117 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-28 14:47:29] 2026-02-28 13:47:29,190 [wrapper] ==== pilot stdout END ====
[2026-02-28 14:47:29] 2026-02-28 13:47:29,195 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-28 14:47:29] 2026-02-28 13:47:29,199 [wrapper] pilotpid: 725090
[2026-02-28 14:47:29] 2026-02-28 13:47:29,204 [wrapper] Pilot exit status: 0
[2026-02-28 14:47:29] 2026-02-28 13:47:29,218 [wrapper] pandaids: 7031283505
[2026-02-28 14:47:29] 2026-02-28 13:47:29,244 [wrapper] cleanup supervisor_pilot  789727 725091
[2026-02-28 14:47:29] 2026-02-28 13:47:29,248 [wrapper] Test setup, not cleaning
[2026-02-28 14:47:29] 2026-02-28 13:47:29,253 [wrapper] apfmon messages muted
[2026-02-28 14:47:29] 2026-02-28 13:47:29,258 [wrapper] ==== wrapper stdout END ====
[2026-02-28 14:47:29] 2026-02-28 13:47:29,260 [wrapper] ==== wrapper stderr END ====
[2026-02-28 14:47:29]  *** Error codes and diagnostics ***
[2026-02-28 14:47:29]     "exeErrorCode": 0,
[2026-02-28 14:47:29]     "exeErrorDiag": "",
[2026-02-28 14:47:29]     "pilotErrorCode": 0,
[2026-02-28 14:47:29]     "pilotErrorDiag": "",
[2026-02-28 14:47:29]  *** Listing of results directory ***
[2026-02-28 14:47:29] insgesamt 591664
[2026-02-28 14:47:29] -rw-r--r-- 1 yeti boinc    584627 Feb 27 10:20 pilot3.tar.gz
[2026-02-28 14:47:29] -rwx------ 1 yeti boinc     36322 Feb 27 10:23 runpilot2-wrapper.sh
[2026-02-28 14:47:29] -rw-r--r-- 1 yeti boinc      5111 Feb 27 10:25 queuedata.json
[2026-02-28 14:47:29] -rw-r--r-- 1 yeti boinc       100 Feb 28 10:05 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-28 14:47:29] -rwxr-xr-x 1 yeti boinc      7986 Feb 28 10:05 run_atlas
[2026-02-28 14:47:29] -rw-r--r-- 1 yeti boinc       105 Feb 28 10:05 job.xml
[2026-02-28 14:47:29] -rw-r--r-- 2 yeti boinc 275720733 Feb 28 10:05 EVNT.48448724._000002.pool.root.1
[2026-02-28 14:47:29] -rw-r--r-- 2 yeti boinc     15845 Feb 28 10:05 start_atlas.sh
[2026-02-28 14:47:29] drwxrwx--x 2 yeti boinc      4096 Feb 28 10:05 shared
[2026-02-28 14:47:29] -rw-r--r-- 2 yeti boinc    597969 Feb 28 10:05 input.tar.gz
[2026-02-28 14:47:29] -rw-r--r-- 1 yeti boinc      6617 Feb 28 10:05 init_data.xml
[2026-02-28 14:47:29] -rw-r--r-- 1 yeti boinc         0 Feb 28 10:05 boinc_setup_complete
[2026-02-28 14:47:29] -rw-r--r-- 1 yeti boinc         0 Feb 28 10:05 boinc_lockfile
[2026-02-28 14:47:29] -rw-r--r-- 1 yeti boinc      2602 Feb 28 10:05 pandaJob.out
[2026-02-28 14:47:29] -rw------- 1 yeti boinc        52 Feb 28 10:05 setup.sh.local
[2026-02-28 14:47:29] -rw------- 1 yeti boinc    998782 Feb 28 10:05 agis_schedconf.cvmfs.json
[2026-02-28 14:47:29] -rw------- 1 yeti boinc       419 Feb 28 10:05 workernode_map.json
[2026-02-28 14:47:29] drwx------ 5 yeti boinc      4096 Feb 28 10:05 pilot3
[2026-02-28 14:47:29] -rw------- 1 yeti boinc 320474345 Feb 28 14:45 HITS.48842588._000028.pool.root.1
[2026-02-28 14:47:29] -rw-r--r-- 1 yeti boinc       530 Feb 28 14:45 boinc_task_state.xml
[2026-02-28 14:47:29] -rw------- 1 yeti boinc        95 Feb 28 14:46 pilot_heartbeat.json
[2026-02-28 14:47:29] -rw------- 1 yeti boinc      1025 Feb 28 14:46 memory_monitor_summary.json
[2026-02-28 14:47:29] -rw------- 1 yeti boinc   1513015 Feb 28 14:46 agis_ddmendpoints.agis.ALL.json
[2026-02-28 14:47:29] -rw------- 1 yeti boinc    430833 Feb 28 14:46 log.48842588._000028.job.log.tgz.1
[2026-02-28 14:47:29] -rw------- 1 yeti boinc      6305 Feb 28 14:46 heartbeat.json
[2026-02-28 14:47:29] -rw-r--r-- 1 yeti boinc        28 Feb 28 14:47 wrapper_checkpoint.txt
[2026-02-28 14:47:29] -rw-r--r-- 1 yeti boinc      8192 Feb 28 14:47 boinc_mmap_file
[2026-02-28 14:47:29] -rw------- 1 yeti boinc      5500 Feb 28 14:47 pilotlog.txt
[2026-02-28 14:47:29] -rw------- 1 yeti boinc   2436456 Feb 28 14:47 log.48842588._000028.job.log.1
[2026-02-28 14:47:29] -rw------- 1 yeti boinc       357 Feb 28 14:47 output.list
[2026-02-28 14:47:29] -rw-r--r-- 1 yeti boinc       620 Feb 28 14:47 runtime_log
[2026-02-28 14:47:29] -rw------- 1 yeti boinc   2887680 Feb 28 14:47 result.tar.gz
[2026-02-28 14:47:29] -rw-r--r-- 1 yeti boinc      9545 Feb 28 14:47 runtime_log.err
[2026-02-28 14:47:29] -rw------- 1 yeti boinc       643 Feb 28 14:47 24PMDmRF9F9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmbn4KDmW92sbm.diag
[2026-02-28 14:47:29] -rw-r--r-- 1 yeti boinc     20867 Feb 28 14:47 stderr.txt
[2026-02-28 14:47:29] HITS file was successfully produced:
[2026-02-28 14:47:29] -rw------- 1 yeti boinc 320474345 Feb 28 14:45 shared/HITS.pool.root.1
[2026-02-28 14:47:29]  *** Contents of shared directory: ***
[2026-02-28 14:47:29] insgesamt 585652
[2026-02-28 14:47:29] -rw-r--r-- 2 yeti boinc 275720733 Feb 28 10:05 ATLAS.root_0
[2026-02-28 14:47:29] -rw-r--r-- 2 yeti boinc     15845 Feb 28 10:05 start_atlas.sh
[2026-02-28 14:47:29] -rw-r--r-- 2 yeti boinc    597969 Feb 28 10:05 input.tar.gz
[2026-02-28 14:47:29] -rw------- 1 yeti boinc 320474345 Feb 28 14:45 HITS.pool.root.1
[2026-02-28 14:47:29] -rw------- 1 yeti boinc   2887680 Feb 28 14:47 result.tar.gz
14:47:31 (721116): run_atlas exited; CPU time 65817.361917
14:47:31 (721116): called boinc_finish(0)

</stderr_txt>
]]>

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