Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:47:06 (21728): wrapper (7.7.26015): starting
11:47:06 (21728): wrapper: running run_atlas (--nthreads 8)
[2026-02-28 11:47:06] Arguments: --nthreads 8
[2026-02-28 11:47:06] Threads: 8
[2026-02-28 11:47:06] Checking for CVMFS
[2026-02-28 11:47:06] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-28 11:49:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-28 11:49:29] Running cvmfs_config stat atlas.cern.ch
[2026-02-28 11:49:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-28 11:49:32] 2.11.2.0 15174 107298 125992 156729 0 50 15978687 25165825 0 130560 124 34707462 99.832 23618344 1046 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://141.99.253.245:3128/ 0
[2026-02-28 11:49:32] CVMFS is ok
[2026-02-28 11:49:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-28 11:49:32] Checking for apptainer binary...
[2026-02-28 11:49:32] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-28 11:49:32] Running /usr/bin/apptainer --version
[2026-02-28 11:49:32] apptainer version 1.3.2-1.el7
[2026-02-28 11:49:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-28 11:49:33] cg-vwn376.simple-grid.lan
[2026-02-28 11:49:33] apptainer works
[2026-02-28 11:49:33] Set ATHENA_PROC_NUMBER=8
[2026-02-28 11:49:33] Set ATHENA_CORE_NUMBER=8
[2026-02-28 11:49:33] Starting ATLAS job with PandaID=7032344532
[2026-02-28 11:49:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-28 14:12:45]  *** The last 200 lines of the pilot log: ***
[2026-02-28 14:12:45] 2026-02-28 13:11:50,921 | INFO     | job 7032344532 has finished - writing final server update
[2026-02-28 14:12:45] 2026-02-28 13:11:50,921 | INFO     | total number of processed events: 400 (read)
[2026-02-28 14:12:45] 2026-02-28 13:11:50,923 | INFO     | using path: /var/lib/boinc/slots/18/PanDA_Pilot-7032344532/memory_monitor_summary.json (trf name=prmon)
[2026-02-28 14:12:45] 2026-02-28 13:11:50,924 | INFO     | extracted standard info from prmon json
[2026-02-28 14:12:45] 2026-02-28 13:11:50,924 | INFO     | extracted standard memory fields from prmon json
[2026-02-28 14:12:45] 2026-02-28 13:11:50,924 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-28 14:12:45] 2026-02-28 13:11:50,925 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-28 14:12:45] 2026-02-28 13:11:50,925 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-28 14:12:45] 2026-02-28 13:11:50,928 | INFO     | fitting pss+swap vs Time
[2026-02-28 14:12:45] 2026-02-28 13:11:50,929 | INFO     | sum of square deviations: 814878534.5
[2026-02-28 14:12:45] 2026-02-28 13:11:50,930 | INFO     | sum of deviations: 4894782221.5
[2026-02-28 14:12:45] 2026-02-28 13:11:50,930 | INFO     | mean x: 1772280092.5
[2026-02-28 14:12:45] 2026-02-28 13:11:50,930 | INFO     | mean y: 2498684.9492753623
[2026-02-28 14:12:45] 2026-02-28 13:11:50,930 | INFO     | intersect: -10643167780.679504
[2026-02-28 14:12:45] 2026-02-28 13:11:50,931 | INFO     | chi2: 2.355469274412912
[2026-02-28 14:12:45] 2026-02-28 13:11:50,931 | INFO     | sum of square deviations: 729472282.0
[2026-02-28 14:12:45] 2026-02-28 13:11:50,932 | INFO     | sum of deviations: 13675431643.999998
[2026-02-28 14:12:45] 2026-02-28 13:11:50,932 | INFO     | mean x: 1772279940.0
[2026-02-28 14:12:45] 2026-02-28 13:11:50,932 | INFO     | mean y: 2513879.2781954887
[2026-02-28 14:12:45] 2026-02-28 13:11:50,932 | INFO     | intersect: -33222454048.293343
[2026-02-28 14:12:45] 2026-02-28 13:11:50,933 | INFO     | chi2: 1.5906063440473701
[2026-02-28 14:12:45] 2026-02-28 13:11:50,933 | INFO     | current chi2=1.5906063440473701 (change=32.471785502537706 %)
[2026-02-28 14:12:45] 2026-02-28 13:11:50,933 | INFO     | sum of square deviations: 650252192.0
[2026-02-28 14:12:45] 2026-02-28 13:11:50,934 | INFO     | sum of deviations: 13040432776.5
[2026-02-28 14:12:45] 2026-02-28 13:11:50,934 | INFO     | mean x: 1772279787.5
[2026-02-28 14:12:45] 2026-02-28 13:11:50,934 | INFO     | mean y: 2512656.3203125
[2026-02-28 14:12:45] 2026-02-28 13:11:50,935 | INFO     | intersect: -35539536589.15682
[2026-02-28 14:12:45] 2026-02-28 13:11:50,935 | INFO     | chi2: 1.5930796142833008
[2026-02-28 14:12:45] 2026-02-28 13:11:50,935 | INFO     | current chi2=1.5930796142833008 (change=-0.1554922904203527 %)
[2026-02-28 14:12:45] 2026-02-28 13:11:50,935 | INFO     | right removable region: 127
[2026-02-28 14:12:45] 2026-02-28 13:11:50,936 | INFO     | sum of square deviations: 729472282.0
[2026-02-28 14:12:45] 2026-02-28 13:11:50,936 | INFO     | sum of deviations: -16283401244.0
[2026-02-28 14:12:45] 2026-02-28 13:11:50,937 | INFO     | mean x: 1772280245.0
[2026-02-28 14:12:45] 2026-02-28 13:11:50,937 | INFO     | mean y: 2535885.2556390977
[2026-02-28 14:12:45] 2026-02-28 13:11:50,937 | INFO     | intersect: 39563669403.62231
[2026-02-28 14:12:45] 2026-02-28 13:11:50,937 | INFO     | chi2: 0.8888055258116367
[2026-02-28 14:12:45] 2026-02-28 13:11:50,937 | INFO     | current chi2=0.8888055258116367 (change=62.266307802585686 %)
[2026-02-28 14:12:45] 2026-02-28 13:11:50,938 | INFO     | sum of square deviations: 650252192.0
[2026-02-28 14:12:45] 2026-02-28 13:11:50,939 | INFO     | sum of deviations: -13309367350.0
[2026-02-28 14:12:45] 2026-02-28 13:11:50,939 | INFO     | mean x: 1772280397.5
[2026-02-28 14:12:45] 2026-02-28 13:11:50,939 | INFO     | mean y: 2530068.09375
[2026-02-28 14:12:45] 2026-02-28 13:11:50,939 | INFO     | intersect: 36277580191.31044
[2026-02-28 14:12:45] 2026-02-28 13:11:50,939 | INFO     | chi2: 0.8696414515697254
[2026-02-28 14:12:45] 2026-02-28 13:11:50,940 | INFO     | current chi2=0.8696414515697254 (change=2.1561605644171893 %)
[2026-02-28 14:12:45] 2026-02-28 13:11:50,940 | INFO     | left removable region: 20
[2026-02-28 14:12:45] 2026-02-28 13:11:50,940 | INFO     | sum of square deviations: 379832238.0
[2026-02-28 14:12:45] 2026-02-28 13:11:50,941 | INFO     | sum of deviations: 1673072376.0
[2026-02-28 14:12:45] 2026-02-28 13:11:50,941 | INFO     | mean x: 1772280367.0
[2026-02-28 14:12:45] 2026-02-28 13:11:50,942 | INFO     | mean y: 2532280.7570093456
[2026-02-28 14:12:45] 2026-02-28 13:11:50,942 | INFO     | intersect: -7803949181.079417
[2026-02-28 14:12:45] 2026-02-28 13:11:50,942 | INFO     | chi2: 0.0001786059206386808
[2026-02-28 14:12:45] 2026-02-28 13:11:50,942 | INFO     | current memory leak: 4.40 B/s (using 107 data points, chi2=0.00)
[2026-02-28 14:12:45] 2026-02-28 13:11:50,943 | INFO     | could have reported an average CPU frequency of 1999 MHz (8 samples)
[2026-02-28 14:12:45] 2026-02-28 13:11:50,943 | INFO     | ..............................
[2026-02-28 14:12:45] 2026-02-28 13:11:50,943 | INFO     | . Timing measurements:
[2026-02-28 14:12:45] 2026-02-28 13:11:50,943 | INFO     | . get job = 0 s
[2026-02-28 14:12:45] 2026-02-28 13:11:50,943 | INFO     | . initial setup = 7 s
[2026-02-28 14:12:45] 2026-02-28 13:11:50,944 | INFO     | . payload setup = 8 s
[2026-02-28 14:12:45] 2026-02-28 13:11:50,944 | INFO     | . stage-in = 0 s
[2026-02-28 14:12:45] 2026-02-28 13:11:50,944 | INFO     | . payload execution = 8394 s
[2026-02-28 14:12:45] 2026-02-28 13:11:50,944 | INFO     | . stage-out = 1 s
[2026-02-28 14:12:45] 2026-02-28 13:11:50,944 | INFO     | . log creation = 0 s
[2026-02-28 14:12:45] 2026-02-28 13:11:50,944 | INFO     | ..............................
[2026-02-28 14:12:45] 2026-02-28 13:11:51,062 | INFO     | 
[2026-02-28 14:12:45] 2026-02-28 13:11:51,062 | INFO     | job summary report
[2026-02-28 14:12:45] 2026-02-28 13:11:51,062 | INFO     | --------------------------------------------------
[2026-02-28 14:12:45] 2026-02-28 13:11:51,062 | INFO     | PanDA job id: 7032344532
[2026-02-28 14:12:45] 2026-02-28 13:11:51,063 | INFO     | task id: 48838551
[2026-02-28 14:12:45] 2026-02-28 13:11:51,063 | INFO     | errors: (none)
[2026-02-28 14:12:45] 2026-02-28 13:11:51,063 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-28 14:12:45] 2026-02-28 13:11:51,063 | INFO     | pilot state: finished 
[2026-02-28 14:12:45] 2026-02-28 13:11:51,063 | INFO     | transexitcode: 0
[2026-02-28 14:12:45] 2026-02-28 13:11:51,063 | INFO     | exeerrorcode: 0
[2026-02-28 14:12:45] 2026-02-28 13:11:51,063 | INFO     | exeerrordiag: 
[2026-02-28 14:12:45] 2026-02-28 13:11:51,063 | INFO     | exitcode: 0
[2026-02-28 14:12:45] 2026-02-28 13:11:51,063 | INFO     | exitmsg: OK
[2026-02-28 14:12:45] 2026-02-28 13:11:51,064 | INFO     | cpuconsumptiontime: 63330 s
[2026-02-28 14:12:45] 2026-02-28 13:11:51,064 | INFO     | nevents: 400
[2026-02-28 14:12:45] 2026-02-28 13:11:51,064 | INFO     | neventsw: 0
[2026-02-28 14:12:45] 2026-02-28 13:11:51,064 | INFO     | pid: 30212
[2026-02-28 14:12:45] 2026-02-28 13:11:51,064 | INFO     | pgrp: 30212
[2026-02-28 14:12:45] 2026-02-28 13:11:51,064 | INFO     | corecount: 8
[2026-02-28 14:12:45] 2026-02-28 13:11:51,064 | INFO     | event service: False
[2026-02-28 14:12:45] 2026-02-28 13:11:51,064 | INFO     | sizes: {0: 2281826, 1: 2282287, 12: 2282287, 8406: 2310064, 8408: 2319064, 8411: 2319120, 8412: 2319442}
[2026-02-28 14:12:45] 2026-02-28 13:11:51,064 | INFO     | --------------------------------------------------
[2026-02-28 14:12:45] 2026-02-28 13:11:51,064 | INFO     | 
[2026-02-28 14:12:45] 2026-02-28 13:11:51,065 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2026-02-28 14:12:45] 2026-02-28 13:11:51,112 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-28 14:12:45] 2026-02-28 13:11:51,113 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-28 14:12:45] 2026-02-28 13:11:51,113 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-28 14:12:45] 2026-02-28 13:11:51,115 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-28 14:12:45] 2026-02-28 13:11:51,115 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-28 14:12:45] 2026-02-28 13:11:51,115 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-28 14:12:45] 2026-02-28 13:11:51,116 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-28 14:12:45] 2026-02-28 13:11:51,116 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-28 14:12:45] 2026-02-28 13:11:51,116 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-28 14:12:45] 2026-02-28 13:11:51,116 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-28 14:12:45] 2026-02-28 13:11:51,116 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-28 14:12:45] 2026-02-28 13:11:51,116 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-28 14:12:45] 2026-02-28 13:11:51,116 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-28 14:12:45] 2026-02-28 13:11:51,116 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-28 14:12:45] 2026-02-28 13:11:51,116 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-28 14:12:45] 2026-02-28 13:11:51,117 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-28 14:12:45] 2026-02-28 13:11:51,117 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-28 14:12:45] 2026-02-28 13:11:51,117 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-28 14:12:45] 2026-02-28 13:11:51,117 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-28 14:12:45] 2026-02-28 13:11:51,117 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-28 14:12:45] 2026-02-28 13:11:51,117 | INFO     | job 7032344532 has completed (purged errors)
[2026-02-28 14:12:45] 2026-02-28 13:11:51,117 | INFO     | overall cleanup function is called
[2026-02-28 14:12:45] 2026-02-28 13:11:51,738 | INFO     | PID=25780 has CPU usage=8.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-28 14:12:45] 2026-02-28 13:11:52,126 | INFO     | --- collectZombieJob: --- 10, [30212]
[2026-02-28 14:12:45] 2026-02-28 13:11:52,126 | INFO     | zombie collector waiting for pid 30212
[2026-02-28 14:12:45] 2026-02-28 13:11:52,126 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-28 14:12:45] 2026-02-28 13:11:52,126 | INFO     | collected zombie processes
[2026-02-28 14:12:45] 2026-02-28 13:11:52,126 | INFO     | will attempt to kill all subprocesses of pid=30212
[2026-02-28 14:12:45] 2026-02-28 13:11:52,184 | INFO     | process IDs to be killed: [30212] (in reverse order)
[2026-02-28 14:12:45] 2026-02-28 13:11:52,238 | WARNING  | found no corresponding commands to process id(s)
[2026-02-28 14:12:45] 2026-02-28 13:11:52,238 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-28 14:12:45] 2026-02-28 13:11:52,240 | INFO     | did not find any defunct processes belonging to 30212
[2026-02-28 14:12:45] 2026-02-28 13:11:52,242 | INFO     | did not find any defunct processes belonging to 30212
[2026-02-28 14:12:45] 2026-02-28 13:11:52,242 | INFO     | ready for new job
[2026-02-28 14:12:45] 2026-02-28 13:11:52,242 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-28 14:12:45] 2026-02-28 13:11:52,244 | INFO     | **************************************
[2026-02-28 14:12:45] 2026-02-28 13:11:52,245 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-28 14:12:45] 2026-02-28 13:11:52,245 | INFO     | **************************************
[2026-02-28 14:12:45] 2026-02-28 13:11:52,245 | INFO     | 
[2026-02-28 14:12:45] 2026-02-28 13:11:52,245 | INFO     | pilot is running in a VM
[2026-02-28 14:12:45] 2026-02-28 13:11:52,246 | INFO     | architecture information:
[2026-02-28 14:12:45] 2026-02-28 13:11:52,246 | INFO     | executing command: cat /etc/os-release
[2026-02-28 14:12:45] 2026-02-28 13:11:52,265 | INFO     | cat /etc/os-release:
[2026-02-28 14:12:45] NAME="CentOS Linux"
[2026-02-28 14:12:45] VERSION="7 (Core)"
[2026-02-28 14:12:45] ID="centos"
[2026-02-28 14:12:45] ID_LIKE="rhel fedora"
[2026-02-28 14:12:45] VERSION_ID="7"
[2026-02-28 14:12:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-28 14:12:45] ANSI_COLOR="0;31"
[2026-02-28 14:12:45] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-28 14:12:45] HOME_URL="https://www.centos.org/"
[2026-02-28 14:12:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-28 14:12:45] 
[2026-02-28 14:12:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-28 14:12:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-28 14:12:45] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-28 14:12:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-28 14:12:45] 
[2026-02-28 14:12:45] 2026-02-28 13:11:52,265 | INFO     | **************************************
[2026-02-28 14:12:45] 2026-02-28 13:11:52,768 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2026-02-28 14:12:45] 2026-02-28 13:11:52,797 | INFO     | sufficient remaining disk space (497828233216 B)
[2026-02-28 14:12:45] 2026-02-28 13:11:52,797 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-28 14:12:45] 2026-02-28 13:11:52,797 | INFO     | current server update state: UPDATING_FINAL
[2026-02-28 14:12:45] 2026-02-28 13:11:52,798 | INFO     | update_server=False
[2026-02-28 14:12:45] 2026-02-28 13:11:52,798 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-28 14:12:45] 2026-02-28 13:11:52,798 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-28 14:12:45] 2026-02-28 13:11:52,799 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-28 14:12:45] 2026-02-28 13:11:52,799 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-28 14:12:45] 2026-02-28 13:11:52,799 | INFO     | aborting loop
[2026-02-28 14:12:45] 2026-02-28 13:11:52,814 | INFO     | all data control threads have been joined
[2026-02-28 14:12:45] 2026-02-28 13:11:53,518 | INFO     | all payload control threads have been joined
[2026-02-28 14:12:45] 2026-02-28 13:11:53,804 | INFO     | [job] retrieve thread has finished
[2026-02-28 14:12:45] 2026-02-28 13:11:53,804 | INFO     | [job] queue monitor thread has finished
[2026-02-28 14:12:45] 2026-02-28 13:11:53,805 | INFO     | [job] job monitor thread has finished
[2026-02-28 14:12:45] 2026-02-28 13:11:53,820 | INFO     | [data] control thread has finished
[2026-02-28 14:12:45] 2026-02-28 13:11:54,025 | INFO     | [job] validate thread has finished
[2026-02-28 14:12:45] 2026-02-28 13:11:54,316 | INFO     | [payload] execute_payloads thread has finished
[2026-02-28 14:12:45] 2026-02-28 13:11:54,432 | INFO     | all job control threads have been joined
[2026-02-28 14:12:45] 2026-02-28 13:11:54,434 | INFO     | [job] create_data_payload thread has finished
[2026-02-28 14:12:45] 2026-02-28 13:11:54,449 | INFO     | [payload] validate_pre thread has finished
[2026-02-28 14:12:45] 2026-02-28 13:11:54,524 | INFO     | [payload] control thread has finished
[2026-02-28 14:12:45] 2026-02-28 13:11:54,805 | INFO     | [data] copytool_out thread has finished
[2026-02-28 14:12:45] 2026-02-28 13:11:55,039 | INFO     | [payload] validate_post thread has finished
[2026-02-28 14:12:45] 2026-02-28 13:11:55,065 | INFO     | [data] copytool_in thread has finished
[2026-02-28 14:12:45] 2026-02-28 13:11:55,367 | INFO     | [payload] failed_post thread has finished
[2026-02-28 14:12:45] 2026-02-28 13:11:55,438 | INFO     | [job] control thread has finished
[2026-02-28 14:12:45] 2026-02-28 13:11:56,076 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-28 14:12:45] 2026-02-28 13:12:00,082 | INFO     | [data] queue_monitor thread has finished
[2026-02-28 14:12:45] 2026-02-28 13:12:02,959 | INFO     | job.realtimelogging is not enabled
[2026-02-28 14:12:45] 2026-02-28 13:12:03,965 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-28 14:12:45] 2026-02-28 13:12:23,826 | INFO     | PID=25780 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-28 14:12:45] 2026-02-28 13:12:23,827 | INFO     | found 0 job(s) in 20 queues
[2026-02-28 14:12:45] 2026-02-28 13:12:23,827 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-28 14:12:45] 2026-02-28 13:12:23,828 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-28 14:12:45] 2026-02-28 13:12:39,956 | INFO     | [monitor] cgroup control has ended
[2026-02-28 14:12:45] 2026-02-28 13:12:40,231 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140331329464128)>', '<ExcThread(monitor, started 140331035109120)>']
[2026-02-28 14:12:45] 2026-02-28 13:12:40,881 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-28 14:12:45] 2026-02-28 13:12:40,881 | INFO     | [monitor] control thread has ended
[2026-02-28 14:12:45] 2026-02-28 13:12:45,256 | INFO     | all workflow threads have been joined
[2026-02-28 14:12:45] 2026-02-28 13:12:45,256 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-28 14:12:45] 2026-02-28 13:12:45,257 | INFO     | traces error code: 0
[2026-02-28 14:12:45] 2026-02-28 13:12:45,257 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-28 14:12:45] 2026-02-28 13:12:45,400 [wrapper] ==== pilot stdout END ====
[2026-02-28 14:12:45] 2026-02-28 13:12:45,404 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-28 14:12:45] 2026-02-28 13:12:45,410 [wrapper] pilotpid: 25780
[2026-02-28 14:12:45] 2026-02-28 13:12:45,415 [wrapper] Pilot exit status: 0
[2026-02-28 14:12:45] 2026-02-28 13:12:45,447 [wrapper] pandaids: 7032344532
[2026-02-28 14:12:45] 2026-02-28 13:12:45,522 [wrapper] cleanup supervisor_pilot  3139 25781
[2026-02-28 14:12:45] 2026-02-28 13:12:45,527 [wrapper] Test setup, not cleaning
[2026-02-28 14:12:45] 2026-02-28 13:12:45,532 [wrapper] apfmon messages muted
[2026-02-28 14:12:45] 2026-02-28 13:12:45,541 [wrapper] ==== wrapper stdout END ====
[2026-02-28 14:12:45] 2026-02-28 13:12:45,551 [wrapper] ==== wrapper stderr END ====
[2026-02-28 14:12:45]  *** Error codes and diagnostics ***
[2026-02-28 14:12:45]     "exeErrorCode": 0,
[2026-02-28 14:12:45]     "exeErrorDiag": "",
[2026-02-28 14:12:45]     "pilotErrorCode": 0,
[2026-02-28 14:12:45]     "pilotErrorDiag": "",
[2026-02-28 14:12:45]  *** Listing of results directory ***
[2026-02-28 14:12:45] total 480144
[2026-02-28 14:12:45] -rw-r--r--. 1 boinc boinc    584627 Feb 28 01:57 pilot3.tar.gz
[2026-02-28 14:12:45] -rwx------. 1 boinc boinc     36322 Feb 28 02:00 runpilot2-wrapper.sh
[2026-02-28 14:12:45] -rw-r--r--. 1 boinc boinc      5111 Feb 28 02:02 queuedata.json
[2026-02-28 14:12:45] -rw-r--r--. 1 boinc boinc       100 Feb 28 11:47 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-28 14:12:45] -rwxr-xr-x. 1 boinc boinc      7986 Feb 28 11:47 run_atlas
[2026-02-28 14:12:45] -rw-r--r--. 1 boinc boinc       105 Feb 28 11:47 job.xml
[2026-02-28 14:12:45] -rw-r--r--. 1 boinc boinc      6392 Feb 28 11:47 init_data.xml
[2026-02-28 14:12:45] -rw-r--r--. 2 boinc boinc 274573478 Feb 28 11:47 EVNT.48343723._000034.pool.root.1
[2026-02-28 14:12:45] -rw-r--r--. 2 boinc boinc     15845 Feb 28 11:47 start_atlas.sh
[2026-02-28 14:12:45] drwxrwx--x. 2 boinc boinc        68 Feb 28 11:47 shared
[2026-02-28 14:12:45] -rw-r--r--. 2 boinc boinc    597953 Feb 28 11:47 input.tar.gz
[2026-02-28 14:12:45] -rw-r--r--. 1 boinc boinc         0 Feb 28 11:47 boinc_lockfile
[2026-02-28 14:12:45] -rw-r--r--. 1 boinc boinc      2549 Feb 28 11:49 pandaJob.out
[2026-02-28 14:12:45] -rw-------. 1 boinc boinc    998790 Feb 28 11:51 agis_schedconf.cvmfs.json
[2026-02-28 14:12:45] -rw-------. 1 boinc boinc   1513015 Feb 28 11:51 agis_ddmendpoints.agis.ALL.json
[2026-02-28 14:12:45] -rw-------. 1 boinc boinc       415 Feb 28 11:51 workernode_map.json
[2026-02-28 14:12:45] drwx------. 5 boinc boinc      4096 Feb 28 11:51 pilot3
[2026-02-28 14:12:45] -rw-------. 1 boinc boinc 210043834 Feb 28 14:11 HITS.48838551._000860.pool.root.1
[2026-02-28 14:12:45] -rw-r--r--. 1 boinc boinc       529 Feb 28 14:11 boinc_task_state.xml
[2026-02-28 14:12:45] -rw-------. 1 boinc boinc      1013 Feb 28 14:11 memory_monitor_summary.json
[2026-02-28 14:12:45] -rw-------. 1 boinc boinc    383183 Feb 28 14:11 log.48838551._000860.job.log.tgz.1
[2026-02-28 14:12:45] -rw-------. 1 boinc boinc      6302 Feb 28 14:11 heartbeat.json
[2026-02-28 14:12:45] -rw-------. 1 boinc boinc        95 Feb 28 14:12 pilot_heartbeat.json
[2026-02-28 14:12:45] -rw-r--r--. 1 boinc boinc      8192 Feb 28 14:12 boinc_mmap_file
[2026-02-28 14:12:45] -rw-r--r--. 1 boinc boinc        27 Feb 28 14:12 wrapper_checkpoint.txt
[2026-02-28 14:12:45] -rw-------. 1 boinc boinc      4878 Feb 28 14:12 pilotlog.txt
[2026-02-28 14:12:45] -rw-------. 1 boinc boinc   1182620 Feb 28 14:12 log.48838551._000860.job.log.1
[2026-02-28 14:12:45] -rw-------. 1 boinc boinc       357 Feb 28 14:12 output.list
[2026-02-28 14:12:45] -rw-r--r--. 1 boinc boinc       620 Feb 28 14:12 runtime_log
[2026-02-28 14:12:45] -rw-------. 1 boinc boinc   1587200 Feb 28 14:12 result.tar.gz
[2026-02-28 14:12:45] -rw-------. 1 boinc boinc       652 Feb 28 14:12 spJMDmesNG9n9Rq4apOajLDm4fhM0noT9bVooX4SDmGQ4KDm6oImHo.diag
[2026-02-28 14:12:45] -rw-r--r--. 1 boinc boinc      8831 Feb 28 14:12 runtime_log.err
[2026-02-28 14:12:45] -rw-r--r--. 1 boinc boinc     20805 Feb 28 14:12 stderr.txt
[2026-02-28 14:12:45] HITS file was successfully produced:
[2026-02-28 14:12:45] -rw-------. 1 boinc boinc 210043834 Feb 28 14:11 shared/HITS.pool.root.1
[2026-02-28 14:12:45]  *** Contents of shared directory: ***
[2026-02-28 14:12:45] total 475416
[2026-02-28 14:12:45] -rw-r--r--. 2 boinc boinc 274573478 Feb 28 11:47 ATLAS.root_0
[2026-02-28 14:12:45] -rw-r--r--. 2 boinc boinc     15845 Feb 28 11:47 start_atlas.sh
[2026-02-28 14:12:45] -rw-r--r--. 2 boinc boinc    597953 Feb 28 11:47 input.tar.gz
[2026-02-28 14:12:45] -rw-------. 1 boinc boinc 210043834 Feb 28 14:11 HITS.pool.root.1
[2026-02-28 14:12:45] -rw-------. 1 boinc boinc   1587200 Feb 28 14:12 result.tar.gz
14:12:47 (21728): run_atlas exited; CPU time 63378.544524
14:12:47 (21728): called boinc_finish(0)

</stderr_txt>
]]>

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