Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:21:51 (9615): wrapper (7.7.26015): starting
17:21:51 (9615): wrapper: running run_atlas (--nthreads 8)
[2026-02-28 17:21:51] Arguments: --nthreads 8
[2026-02-28 17:21:51] Threads: 8
[2026-02-28 17:21:51] Checking for CVMFS
[2026-02-28 17:21:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-28 17:21:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-28 17:21:52] Running cvmfs_config stat atlas.cern.ch
[2026-02-28 17:21:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-28 17:21:52] 2.11.2.0 18097 107648 130188 156739 3 9 21186864 25165825 0 130560 159 36192370 99.764 32633168 1060 http://s1ihep-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-02-28 17:21:52] CVMFS is ok
[2026-02-28 17:21:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-28 17:21:52] Checking for apptainer binary...
[2026-02-28 17:21:52] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-28 17:21:52] Running /usr/bin/apptainer --version
[2026-02-28 17:21:52] apptainer version 1.3.2-1.el7
[2026-02-28 17:21:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-28 17:21:54] cg-vwn387.simple-grid.lan
[2026-02-28 17:21:54] apptainer works
[2026-02-28 17:21:54] Set ATHENA_PROC_NUMBER=8
[2026-02-28 17:21:54] Set ATHENA_CORE_NUMBER=8
[2026-02-28 17:21:54] Starting ATLAS job with PandaID=7032459609
[2026-02-28 17:21:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-01 06:56:02]  *** The last 200 lines of the pilot log: ***
[2026-03-01 06:56:02] 2026-03-01 05:54:48,670 | INFO     | job 7032459609 has finished - writing final server update
[2026-03-01 06:56:02] 2026-03-01 05:54:48,671 | INFO     | total number of processed events: 400 (read)
[2026-03-01 06:56:02] 2026-03-01 05:54:48,673 | INFO     | using path: /var/lib/boinc/slots/16/PanDA_Pilot-7032459609/memory_monitor_summary.json (trf name=prmon)
[2026-03-01 06:56:02] 2026-03-01 05:54:48,673 | INFO     | extracted standard info from prmon json
[2026-03-01 06:56:02] 2026-03-01 05:54:48,674 | INFO     | extracted standard memory fields from prmon json
[2026-03-01 06:56:02] 2026-03-01 05:54:48,674 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-01 06:56:02] 2026-03-01 05:54:48,674 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-01 06:56:02] 2026-03-01 05:54:48,674 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-01 06:56:02] 2026-03-01 05:54:48,690 | INFO     | fitting pss+swap vs Time
[2026-03-01 06:56:02] 2026-03-01 05:54:48,692 | INFO     | sum of square deviations: 158167802800.0
[2026-03-01 06:56:02] 2026-03-01 05:54:48,711 | INFO     | sum of deviations: -36743972200.000015
[2026-03-01 06:56:02] 2026-03-01 05:54:48,711 | INFO     | mean x: 1772320115.0
[2026-03-01 06:56:02] 2026-03-01 05:54:48,711 | INFO     | mean y: 2523425.7158948686
[2026-03-01 06:56:02] 2026-03-01 05:54:48,711 | INFO     | intersect: 414251222.91749346
[2026-03-01 06:56:02] 2026-03-01 05:54:48,713 | INFO     | chi2: 2.575307940792897
[2026-03-01 06:56:02] 2026-03-01 05:54:48,714 | INFO     | sum of square deviations: 155216984682.5
[2026-03-01 06:56:02] 2026-03-01 05:54:48,739 | INFO     | sum of deviations: 16451653853.499968
[2026-03-01 06:56:02] 2026-03-01 05:54:48,740 | INFO     | mean x: 1772319962.5
[2026-03-01 06:56:02] 2026-03-01 05:54:48,740 | INFO     | mean y: 2526160.950881612
[2026-03-01 06:56:02] 2026-03-01 05:54:48,740 | INFO     | intersect: -185324380.02142623
[2026-03-01 06:56:02] 2026-03-01 05:54:48,741 | INFO     | chi2: 1.8044487363807569
[2026-03-01 06:56:02] 2026-03-01 05:54:48,741 | INFO     | current chi2=1.8044487363807569 (change=29.932700171568786 %)
[2026-03-01 06:56:02] 2026-03-01 05:54:48,743 | INFO     | sum of square deviations: 152303097490.0
[2026-03-01 06:56:02] 2026-03-01 05:54:48,761 | INFO     | sum of deviations: 15946890291.000021
[2026-03-01 06:56:02] 2026-03-01 05:54:48,761 | INFO     | mean x: 1772319810.0
[2026-03-01 06:56:02] 2026-03-01 05:54:48,761 | INFO     | mean y: 2526134.5335868187
[2026-03-01 06:56:02] 2026-03-01 05:54:48,761 | INFO     | intersect: -183044546.80131975
[2026-03-01 06:56:02] 2026-03-01 05:54:48,762 | INFO     | chi2: 1.8044179949449455
[2026-03-01 06:56:02] 2026-03-01 05:54:48,763 | INFO     | current chi2=1.8044179949449455 (change=0.0017036469472137457 %)
[2026-03-01 06:56:02] 2026-03-01 05:54:48,763 | INFO     | right removable region: 788
[2026-03-01 06:56:02] 2026-03-01 05:54:48,764 | INFO     | sum of square deviations: 155216984682.5
[2026-03-01 06:56:02] 2026-03-01 05:54:48,790 | INFO     | sum of deviations: -160426969276.00006
[2026-03-01 06:56:02] 2026-03-01 05:54:48,790 | INFO     | mean x: 1772320267.5
[2026-03-01 06:56:02] 2026-03-01 05:54:48,790 | INFO     | mean y: 2529799.4886649875
[2026-03-01 06:56:02] 2026-03-01 05:54:48,790 | INFO     | intersect: 1834339441.2173345
[2026-03-01 06:56:02] 2026-03-01 05:54:48,792 | INFO     | chi2: 1.1472458363510565
[2026-03-01 06:56:02] 2026-03-01 05:54:48,792 | INFO     | current chi2=1.1472458363510565 (change=55.45209106147371 %)
[2026-03-01 06:56:02] 2026-03-01 05:54:48,793 | INFO     | sum of square deviations: 152303097490.0
[2026-03-01 06:56:02] 2026-03-01 05:54:48,818 | INFO     | sum of deviations: -174415578519.0
[2026-03-01 06:56:02] 2026-03-01 05:54:48,818 | INFO     | mean x: 1772320420.0
[2026-03-01 06:56:02] 2026-03-01 05:54:48,818 | INFO     | mean y: 2530531.5842839037
[2026-03-01 06:56:02] 2026-03-01 05:54:48,819 | INFO     | intersect: 2032169432.3665445
[2026-03-01 06:56:02] 2026-03-01 05:54:48,820 | INFO     | chi2: 1.1320350200498395
[2026-03-01 06:56:02] 2026-03-01 05:54:48,820 | INFO     | current chi2=1.1320350200498395 (change=1.3258550015397494 %)
[2026-03-01 06:56:02] 2026-03-01 05:54:48,820 | INFO     | left removable region: 20
[2026-03-01 06:56:02] 2026-03-01 05:54:48,821 | INFO     | sum of square deviations: 140462808512.0
[2026-03-01 06:56:02] 2026-03-01 05:54:48,843 | INFO     | sum of deviations: -82536443999.00027
[2026-03-01 06:56:02] 2026-03-01 05:54:48,843 | INFO     | mean x: 1772320389.5
[2026-03-01 06:56:02] 2026-03-01 05:54:48,843 | INFO     | mean y: 2531275.8489583335
[2026-03-01 06:56:02] 2026-03-01 05:54:48,843 | INFO     | intersect: 1043953016.7773128
[2026-03-01 06:56:02] 2026-03-01 05:54:48,844 | INFO     | chi2: 0.31084172046457365
[2026-03-01 06:56:02] 2026-03-01 05:54:48,845 | INFO     | current memory leak: -0.59 B/s (using 768 data points, chi2=0.31)
[2026-03-01 06:56:02] 2026-03-01 05:54:48,846 | INFO     | could have reported an average CPU frequency of 1999 MHz (30 samples)
[2026-03-01 06:56:02] 2026-03-01 05:54:48,846 | INFO     | ..............................
[2026-03-01 06:56:02] 2026-03-01 05:54:48,846 | INFO     | . Timing measurements:
[2026-03-01 06:56:02] 2026-03-01 05:54:48,846 | INFO     | . get job = 0 s
[2026-03-01 06:56:02] 2026-03-01 05:54:48,846 | INFO     | . initial setup = 8 s
[2026-03-01 06:56:02] 2026-03-01 05:54:48,846 | INFO     | . payload setup = 9 s
[2026-03-01 06:56:02] 2026-03-01 05:54:48,846 | INFO     | . stage-in = 0 s
[2026-03-01 06:56:02] 2026-03-01 05:54:48,847 | INFO     | . payload execution = 48709 s
[2026-03-01 06:56:02] 2026-03-01 05:54:48,847 | INFO     | . stage-out = 4 s
[2026-03-01 06:56:02] 2026-03-01 05:54:48,847 | INFO     | . log creation = 1 s
[2026-03-01 06:56:02] 2026-03-01 05:54:48,847 | INFO     | ..............................
[2026-03-01 06:56:02] 2026-03-01 05:54:49,427 | INFO     | 
[2026-03-01 06:56:02] 2026-03-01 05:54:49,428 | INFO     | job summary report
[2026-03-01 06:56:02] 2026-03-01 05:54:49,428 | INFO     | --------------------------------------------------
[2026-03-01 06:56:02] 2026-03-01 05:54:49,428 | INFO     | PanDA job id: 7032459609
[2026-03-01 06:56:02] 2026-03-01 05:54:49,428 | INFO     | task id: 48843135
[2026-03-01 06:56:02] 2026-03-01 05:54:49,428 | INFO     | errors: (none)
[2026-03-01 06:56:02] 2026-03-01 05:54:49,428 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-01 06:56:02] 2026-03-01 05:54:49,428 | INFO     | pilot state: finished 
[2026-03-01 06:56:02] 2026-03-01 05:54:49,428 | INFO     | transexitcode: 0
[2026-03-01 06:56:02] 2026-03-01 05:54:49,428 | INFO     | exeerrorcode: 0
[2026-03-01 06:56:02] 2026-03-01 05:54:49,429 | INFO     | exeerrordiag: 
[2026-03-01 06:56:02] 2026-03-01 05:54:49,429 | INFO     | exitcode: 0
[2026-03-01 06:56:02] 2026-03-01 05:54:49,429 | INFO     | exitmsg: OK
[2026-03-01 06:56:02] 2026-03-01 05:54:49,429 | INFO     | cpuconsumptiontime: 202022 s
[2026-03-01 06:56:02] 2026-03-01 05:54:49,429 | INFO     | nevents: 400
[2026-03-01 06:56:02] 2026-03-01 05:54:49,429 | INFO     | neventsw: 0
[2026-03-01 06:56:02] 2026-03-01 05:54:49,429 | INFO     | pid: 18080
[2026-03-01 06:56:02] 2026-03-01 05:54:49,429 | INFO     | pgrp: 18080
[2026-03-01 06:56:02] 2026-03-01 05:54:49,429 | INFO     | corecount: 8
[2026-03-01 06:56:02] 2026-03-01 05:54:49,429 | INFO     | event service: False
[2026-03-01 06:56:02] 2026-03-01 05:54:49,430 | INFO     | sizes: {0: 2282278, 1: 2282338, 11: 2282366, 48723: 2328472, 48728: 2337472, 48730: 2337850}
[2026-03-01 06:56:02] 2026-03-01 05:54:49,430 | INFO     | --------------------------------------------------
[2026-03-01 06:56:02] 2026-03-01 05:54:49,430 | INFO     | 
[2026-03-01 06:56:02] 2026-03-01 05:54:49,430 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2026-03-01 06:56:02] 2026-03-01 05:54:50,038 | INFO     | time since job start (48743s) is within the limit (349056.0s)
[2026-03-01 06:56:02] 2026-03-01 05:54:50,103 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-01 06:56:02] 2026-03-01 05:54:50,103 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-01 06:56:02] 2026-03-01 05:54:50,103 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-01 06:56:02] 2026-03-01 05:54:50,104 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-01 06:56:02] 2026-03-01 05:54:50,104 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-01 06:56:02] 2026-03-01 05:54:50,104 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-01 06:56:02] 2026-03-01 05:54:50,104 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-01 06:56:02] 2026-03-01 05:54:50,104 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-01 06:56:02] 2026-03-01 05:54:50,104 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-01 06:56:02] 2026-03-01 05:54:50,104 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-01 06:56:02] 2026-03-01 05:54:50,104 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-01 06:56:02] 2026-03-01 05:54:50,104 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-01 06:56:02] 2026-03-01 05:54:50,105 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-01 06:56:02] 2026-03-01 05:54:50,105 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-01 06:56:02] 2026-03-01 05:54:50,105 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-01 06:56:02] 2026-03-01 05:54:50,105 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-01 06:56:02] 2026-03-01 05:54:50,105 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-01 06:56:02] 2026-03-01 05:54:50,105 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-01 06:56:02] 2026-03-01 05:54:50,105 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-01 06:56:02] 2026-03-01 05:54:50,105 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-01 06:56:02] 2026-03-01 05:54:50,106 | INFO     | job 7032459609 has completed (purged errors)
[2026-03-01 06:56:02] 2026-03-01 05:54:50,106 | INFO     | overall cleanup function is called
[2026-03-01 06:56:02] 2026-03-01 05:54:51,114 | INFO     | --- collectZombieJob: --- 10, [18080]
[2026-03-01 06:56:02] 2026-03-01 05:54:51,114 | INFO     | zombie collector waiting for pid 18080
[2026-03-01 06:56:02] 2026-03-01 05:54:51,115 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-01 06:56:02] 2026-03-01 05:54:51,115 | INFO     | collected zombie processes
[2026-03-01 06:56:02] 2026-03-01 05:54:51,115 | INFO     | will attempt to kill all subprocesses of pid=18080
[2026-03-01 06:56:02] 2026-03-01 05:54:51,216 | INFO     | process IDs to be killed: [18080] (in reverse order)
[2026-03-01 06:56:02] 2026-03-01 05:54:51,920 | WARNING  | found no corresponding commands to process id(s)
[2026-03-01 06:56:02] 2026-03-01 05:54:51,920 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-01 06:56:02] 2026-03-01 05:54:51,922 | INFO     | did not find any defunct processes belonging to 18080
[2026-03-01 06:56:02] 2026-03-01 05:54:51,924 | INFO     | did not find any defunct processes belonging to 18080
[2026-03-01 06:56:02] 2026-03-01 05:54:51,925 | INFO     | ready for new job
[2026-03-01 06:56:02] 2026-03-01 05:54:51,925 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-01 06:56:02] 2026-03-01 05:54:51,929 | INFO     | **************************************
[2026-03-01 06:56:02] 2026-03-01 05:54:51,929 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-01 06:56:02] 2026-03-01 05:54:51,929 | INFO     | **************************************
[2026-03-01 06:56:02] 2026-03-01 05:54:51,929 | INFO     | 
[2026-03-01 06:56:02] 2026-03-01 05:54:51,930 | INFO     | pilot is running in a VM
[2026-03-01 06:56:02] 2026-03-01 05:54:51,930 | INFO     | architecture information:
[2026-03-01 06:56:02] 2026-03-01 05:54:51,938 | INFO     | executing command: cat /etc/os-release
[2026-03-01 06:56:02] 2026-03-01 05:54:52,220 | INFO     | cat /etc/os-release:
[2026-03-01 06:56:02] NAME="CentOS Linux"
[2026-03-01 06:56:02] VERSION="7 (Core)"
[2026-03-01 06:56:02] ID="centos"
[2026-03-01 06:56:02] ID_LIKE="rhel fedora"
[2026-03-01 06:56:02] VERSION_ID="7"
[2026-03-01 06:56:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-01 06:56:02] ANSI_COLOR="0;31"
[2026-03-01 06:56:02] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-01 06:56:02] HOME_URL="https://www.centos.org/"
[2026-03-01 06:56:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-01 06:56:02] 
[2026-03-01 06:56:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-01 06:56:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-01 06:56:02] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-01 06:56:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-01 06:56:02] 
[2026-03-01 06:56:02] 2026-03-01 05:54:52,220 | INFO     | **************************************
[2026-03-01 06:56:02] 2026-03-01 05:54:52,723 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2026-03-01 06:56:02] 2026-03-01 05:54:52,986 | INFO     | sufficient remaining disk space (496317235200 B)
[2026-03-01 06:56:02] 2026-03-01 05:54:52,987 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-01 06:56:02] 2026-03-01 05:54:52,987 | INFO     | current server update state: UPDATING_FINAL
[2026-03-01 06:56:02] 2026-03-01 05:54:52,987 | INFO     | update_server=False
[2026-03-01 06:56:02] 2026-03-01 05:54:52,987 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-01 06:56:02] 2026-03-01 05:54:52,988 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-01 06:56:02] 2026-03-01 05:54:53,081 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-01 06:56:02] 2026-03-01 05:54:53,082 | INFO     | aborting loop
[2026-03-01 06:56:02] 2026-03-01 05:54:53,457 | INFO     | all job control threads have been joined
[2026-03-01 06:56:02] 2026-03-01 05:54:53,897 | INFO     | all data control threads have been joined
[2026-03-01 06:56:02] 2026-03-01 05:54:53,993 | INFO     | [job] retrieve thread has finished
[2026-03-01 06:56:02] 2026-03-01 05:54:53,998 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-01 06:56:02] 2026-03-01 05:54:54,087 | INFO     | [job] job monitor thread has finished
[2026-03-01 06:56:02] 2026-03-01 05:54:54,101 | INFO     | all payload control threads have been joined
[2026-03-01 06:56:02] 2026-03-01 05:54:54,183 | INFO     | [job] create_data_payload thread has finished
[2026-03-01 06:56:02] 2026-03-01 05:54:54,248 | INFO     | [job] validate thread has finished
[2026-03-01 06:56:02] 2026-03-01 05:54:54,317 | INFO     | [payload] failed_post thread has finished
[2026-03-01 06:56:02] 2026-03-01 05:54:54,397 | INFO     | [payload] validate_pre thread has finished
[2026-03-01 06:56:02] 2026-03-01 05:54:54,404 | INFO     | [payload] validate_post thread has finished
[2026-03-01 06:56:02] 2026-03-01 05:54:54,463 | INFO     | [job] control thread has finished
[2026-03-01 06:56:02] 2026-03-01 05:54:54,702 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-01 06:56:02] 2026-03-01 05:54:54,903 | INFO     | [data] control thread has finished
[2026-03-01 06:56:02] 2026-03-01 05:54:54,995 | INFO     | [data] copytool_out thread has finished
[2026-03-01 06:56:02] 2026-03-01 05:54:55,004 | INFO     | [job] queue monitor thread has finished
[2026-03-01 06:56:02] 2026-03-01 05:54:55,031 | INFO     | [payload] execute_payloads thread has finished
[2026-03-01 06:56:02] 2026-03-01 05:54:55,057 | INFO     | [data] copytool_in thread has finished
[2026-03-01 06:56:02] 2026-03-01 05:54:55,107 | INFO     | [payload] control thread has finished
[2026-03-01 06:56:02] 2026-03-01 05:54:55,142 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-01 06:56:02] 2026-03-01 05:54:58,711 | INFO     | [data] queue_monitor thread has finished
[2026-03-01 06:56:02] 2026-03-01 05:55:23,169 | INFO     | PID=13645 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-01 06:56:02] 2026-03-01 05:55:23,169 | INFO     | .. there are 2 such processes running
[2026-03-01 06:56:02] 2026-03-01 05:55:23,169 | INFO     | found 0 job(s) in 20 queues
[2026-03-01 06:56:02] 2026-03-01 05:55:23,169 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-01 06:56:02] 2026-03-01 05:55:23,169 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-01 06:56:02] 2026-03-01 05:55:51,450 | INFO     | [monitor] cgroup control has ended
[2026-03-01 06:56:02] 2026-03-01 05:55:51,990 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139759599716160)>', '<ExcThread(monitor, started 139759166940928)>']
[2026-03-01 06:56:02] 2026-03-01 05:55:52,342 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-01 06:56:02] 2026-03-01 05:55:52,342 | INFO     | [monitor] control thread has ended
[2026-03-01 06:56:02] 2026-03-01 05:55:57,016 | INFO     | all workflow threads have been joined
[2026-03-01 06:56:02] 2026-03-01 05:55:57,016 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-01 06:56:02] 2026-03-01 05:55:57,017 | INFO     | traces error code: 0
[2026-03-01 06:56:02] 2026-03-01 05:55:57,017 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-01 06:56:02] 2026-03-01 05:55:57,406 [wrapper] ==== pilot stdout END ====
[2026-03-01 06:56:02] 2026-03-01 05:55:57,505 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-01 06:56:02] 2026-03-01 05:55:57,620 [wrapper] pilotpid: 13645
[2026-03-01 06:56:02] 2026-03-01 05:55:57,718 [wrapper] Pilot exit status: 0
[2026-03-01 06:56:02] 2026-03-01 05:55:58,127 [wrapper] pandaids: 7032459609
[2026-03-01 06:56:02] 2026-03-01 05:55:59,127 [wrapper] cleanup supervisor_pilot 11189 13646
[2026-03-01 06:56:02] 2026-03-01 05:55:59,242 [wrapper] Test setup, not cleaning
[2026-03-01 06:56:02] 2026-03-01 05:55:59,324 [wrapper] apfmon messages muted
[2026-03-01 06:56:02] 2026-03-01 05:55:59,398 [wrapper] ==== wrapper stdout END ====
[2026-03-01 06:56:02] 2026-03-01 05:55:59,456 [wrapper] ==== wrapper stderr END ====
[2026-03-01 06:56:02]  *** Error codes and diagnostics ***
[2026-03-01 06:56:02]     "exeErrorCode": 0,
[2026-03-01 06:56:02]     "exeErrorDiag": "",
[2026-03-01 06:56:02]     "pilotErrorCode": 0,
[2026-03-01 06:56:02]     "pilotErrorDiag": "",
[2026-03-01 06:56:02]  *** Listing of results directory ***
[2026-03-01 06:56:02] total 495924
[2026-03-01 06:56:02] -rw-r--r--. 1 boinc boinc    584627 Feb 28 01:57 pilot3.tar.gz
[2026-03-01 06:56:02] -rwx------. 1 boinc boinc     36322 Feb 28 01:58 runpilot2-wrapper.sh
[2026-03-01 06:56:02] -rw-r--r--. 1 boinc boinc      5111 Feb 28 01:59 queuedata.json
[2026-03-01 06:56:02] -rw-r--r--. 1 boinc boinc       100 Feb 28 17:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-01 06:56:02] -rwxr-xr-x. 1 boinc boinc      7986 Feb 28 17:21 run_atlas
[2026-03-01 06:56:02] -rw-r--r--. 1 boinc boinc       105 Feb 28 17:21 job.xml
[2026-03-01 06:56:02] -rw-r--r--. 1 boinc boinc      6392 Feb 28 17:21 init_data.xml
[2026-03-01 06:56:02] -rw-r--r--. 2 boinc boinc 229030129 Feb 28 17:21 EVNT.48450240._000002.pool.root.1
[2026-03-01 06:56:02] -rw-r--r--. 2 boinc boinc     15845 Feb 28 17:21 start_atlas.sh
[2026-03-01 06:56:02] drwxrwx--x. 2 boinc boinc        68 Feb 28 17:21 shared
[2026-03-01 06:56:02] -rw-r--r--. 2 boinc boinc    597966 Feb 28 17:21 input.tar.gz
[2026-03-01 06:56:02] -rw-r--r--. 1 boinc boinc         0 Feb 28 17:21 boinc_lockfile
[2026-03-01 06:56:02] -rw-r--r--. 1 boinc boinc      2611 Feb 28 17:21 pandaJob.out
[2026-03-01 06:56:02] -rw-------. 1 boinc boinc    998790 Feb 28 17:22 agis_schedconf.cvmfs.json
[2026-03-01 06:56:02] -rw-------. 1 boinc boinc       415 Feb 28 17:22 workernode_map.json
[2026-03-01 06:56:02] drwx------. 5 boinc boinc      4096 Feb 28 17:22 pilot3
[2026-03-01 06:56:02] -rw-------. 1 boinc boinc 259561280 Mar  1 06:53 HITS.48843135._000046.pool.root.1
[2026-03-01 06:56:02] -rw-r--r--. 1 boinc boinc       531 Mar  1 06:53 boinc_task_state.xml
[2026-03-01 06:56:02] -rw-------. 1 boinc boinc        95 Mar  1 06:54 pilot_heartbeat.json
[2026-03-01 06:56:02] -rw-------. 1 boinc boinc      1016 Mar  1 06:54 memory_monitor_summary.json
[2026-03-01 06:56:02] -rw-------. 1 boinc boinc   1513015 Mar  1 06:54 agis_ddmendpoints.agis.ALL.json
[2026-03-01 06:56:02] -rw-------. 1 boinc boinc    938302 Mar  1 06:54 log.48843135._000046.job.log.tgz.1
[2026-03-01 06:56:02] -rw-------. 1 boinc boinc      6313 Mar  1 06:54 heartbeat.json
[2026-03-01 06:56:02] -rw-r--r--. 1 boinc boinc      8192 Mar  1 06:55 boinc_mmap_file
[2026-03-01 06:56:02] -rw-r--r--. 1 boinc boinc        29 Mar  1 06:55 wrapper_checkpoint.txt
[2026-03-01 06:56:02] -rw-------. 1 boinc boinc      4881 Mar  1 06:55 pilotlog.txt
[2026-03-01 06:56:02] -rw-------. 1 boinc boinc   6719526 Mar  1 06:55 log.48843135._000046.job.log.1
[2026-03-01 06:56:02] -rw-------. 1 boinc boinc       357 Mar  1 06:56 output.list
[2026-03-01 06:56:02] -rw-r--r--. 1 boinc boinc       620 Mar  1 06:56 runtime_log
[2026-03-01 06:56:02] -rw-------. 1 boinc boinc   7680000 Mar  1 06:56 result.tar.gz
[2026-03-01 06:56:02] -rw-------. 1 boinc boinc       658 Mar  1 06:56 Uk7LDmiqNG9n9Rq4apOajLDm4fhM0noT9bVooX4SDmbO4KDmCrjwnm.diag
[2026-03-01 06:56:02] -rw-r--r--. 1 boinc boinc      8832 Mar  1 06:56 runtime_log.err
[2026-03-01 06:56:02] -rw-r--r--. 1 boinc boinc     20739 Mar  1 06:56 stderr.txt
[2026-03-01 06:56:02] HITS file was successfully produced:
[2026-03-01 06:56:02] -rw-------. 1 boinc boinc 259561280 Mar  1 06:53 shared/HITS.pool.root.1
[2026-03-01 06:56:02]  *** Contents of shared directory: ***
[2026-03-01 06:56:02] total 485244
[2026-03-01 06:56:02] -rw-r--r--. 2 boinc boinc 229030129 Feb 28 17:21 ATLAS.root_0
[2026-03-01 06:56:02] -rw-r--r--. 2 boinc boinc     15845 Feb 28 17:21 start_atlas.sh
[2026-03-01 06:56:02] -rw-r--r--. 2 boinc boinc    597966 Feb 28 17:21 input.tar.gz
[2026-03-01 06:56:02] -rw-------. 1 boinc boinc 259561280 Mar  1 06:53 HITS.pool.root.1
[2026-03-01 06:56:02] -rw-------. 1 boinc boinc   7680000 Mar  1 06:56 result.tar.gz
06:56:03 (9615): run_atlas exited; CPU time 202561.662673
06:56:03 (9615): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN